Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G80260 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 0.0e+00 1663.7 846 100.0
CARHR074230 Cardamine hirsuta HOM05D004952 ORTHO05D006131 0.0e+00 1463.7 847 88.1
Thhalv10018067m.g Eutrema salsugineum HOM05D004952 ORTHO05D006131 0.0e+00 1412.9 851 84.7
Sp5g35550 Schrenkiella parvula HOM05D004952 ORTHO05D006131 0.0e+00 1392.5 851 83.4
Carub.0001s2004 Capsella rubella HOM05D004952 ORTHO05D006131 0.0e+00 1355.5 851 82.0
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 0.0e+00 1338.6 854 82.0
BcaC03g15988 Brassica carinata HOM05D004952 ORTHO05D006131 0.0e+00 1333.2 853 81.1
BcaB02g07284 Brassica carinata HOM05D004952 ORTHO05D006131 0.0e+00 1323.1 853 80.3
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 0.0e+00 1322.4 857 80.9
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 0.0e+00 1311.2 867 79.7
AT1G20570 Arabidopsis thaliana HOM05D004952 ORTHO05D006131 0.0e+00 1307.7 853 80.3
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 0.0e+00 1250.7 853 77.4
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 0.0e+00 1246.5 853 77.5
Aa31LG4G540 Aethionema arabicum HOM05D004952 ORTHO05D006131 0.0e+00 1204.1 899 72.2
THA.LOC104813523 Tarenaya hassleriana HOM05D004952 ORTHO05D006131 0.0e+00 1117.4 827 71.0
Cpa.g.sc64.8 Carica papaya HOM05D004952 ORTHO05D006131 5.8e-270 934.5 833 59.5
QL02p006188 Quercus lobata HOM05D004952 ORTHO05D006131 8.1e-264 914.1 839 59.7
TWI36G1022 Tripterygium wilfordii HOM05D004952 ORTHO05D006131 2.4e-260 902.5 839 57.9
Atru.chr13.612 Acer truncatum HOM05D004952 ORTHO05D006131 3.2e-260 902.1 838 58.1
CiPaw.16G049700 Carya illinoinensis HOM05D004952 ORTHO05D006131 1.2e-259 900.2 840 57.6
Ciclev10000139m.g Citrus clementina HOM05D004952 ORTHO05D006131 3.1e-255 885.6 842 57.7
Thecc.10G126500 Theobroma cacao HOM05D004952 ORTHO05D006131 3.2e-252 875.5 832 57.0
TAR381G0370 Trochodendron aralioides HOM05D004952 ORTHO05D006131 5.4e-252 874.8 828 56.6
Gohir.A10G194100 Gossypium hirsutum HOM05D004952 ORTHO05D006131 3.5e-251 872.1 835 56.4
Duzib114G0971 Durio zibethinus HOM05D004952 ORTHO05D006131 1.1e-249 867.1 836 56.7
MD15G1036000 Malus domestica HOM05D004952 ORTHO05D006131 1.5e-249 866.7 827 57.6
RcHm_v2.0_Chr6g0299841 Rosa chinensis HOM05D004952 ORTHO05D006131 9.6e-249 864.0 827 56.6
Lalb_Chr08g0245691 Lupinus albus HOM05D004952 ORTHO05D006131 4.0e-247 858.6 841 55.6
Lj1g0021809 Lotus japonicus HOM05D004952 ORTHO05D006131 3.4e-246 855.5 836 56.1
Gohir.D10G201200 Gossypium hirsutum HOM05D004952 ORTHO05D006131 4.5e-246 855.1 835 55.4
FAN15G3424 Fragaria x ananassa HOM05D004952 ORTHO05D006131 5.8e-246 854.7 826 57.1
Gorai.011G225900 Gossypium raimondii HOM05D004952 ORTHO05D006131 5.8e-246 854.7 835 55.4
FvH4_2g40750 Fragaria vesca HOM05D004952 ORTHO05D006131 2.9e-245 852.4 828 57.0
Hma1.2p1_0260F.1_g104650 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 3.8e-245 852.0 827 56.8
FAN27G3039 Fragaria x ananassa HOM05D004952 ORTHO05D006131 1.1e-244 850.5 822 57.4
CANSAT25G3148 Cannabis sativa HOM05D004952 ORTHO05D006131 1.4e-244 850.1 843 56.1
Rhsim13G0049200 Rhododendron simsii HOM05D004952 ORTHO05D006131 3.3e-241 839.0 853 54.2
Haze_17576 Corylus avellana HOM05D004952 ORTHO05D006131 4.3e-241 838.6 839 55.7
CANSAT35G0575 Cannabis sativa HOM05D004952 ORTHO05D006131 6.2e-240 834.7 826 55.7
Medtr3g101230 Medicago truncatula HOM05D004952 ORTHO05D006131 3.1e-239 832.4 842 53.9
VMungo1309G1417 Vigna mungo HOM05D004952 ORTHO05D006131 1.2e-238 830.5 839 54.8
Glyma.06G036500 Glycine max HOM05D004952 ORTHO05D006131 5.8e-238 828.2 837 55.0
Lj4C49T7 Lonicera japonica HOM05D004952 ORTHO05D006131 5.8e-238 828.2 825 54.5
Cfa003370 Carpinus fangiana HOM05D004952 ORTHO05D006131 3.8e-237 825.5 830 54.7
arahy.Tifrunner.gnm1.ann1.SSY1YH Arachis hypogaea HOM05D004952 ORTHO05D006131 4.9e-237 825.1 838 54.2
Nn6g34572 Nelumbo nucifera HOM05D004952 ORTHO05D006131 8.4e-237 824.3 830 53.6
arahy.Tifrunner.gnm1.ann1.LUQS0S Arachis hypogaea HOM05D004952 ORTHO05D006131 1.1e-236 823.9 837 54.0
CsaV3_4G034010 Cucumis sativus L. HOM05D004952 ORTHO05D006131 2.7e-235 819.3 828 54.2
Sed0020372 Sechium edule HOM05D004952 ORTHO05D006131 6.0e-235 818.1 840 53.9
Phvul.009G062500 Phaseolus vulgaris HOM05D004952 ORTHO05D006131 3.9e-234 815.5 840 54.5
CAN.G371.63 Capsicum annuum HOM05D004952 ORTHO05D006131 4.8e-232 808.5 832 53.0
Ca_15974_v3 Cicer arietinum L. HOM05D004952 ORTHO05D006131 8.2e-232 807.7 835 53.5
ClCG05G019550 Citrullus lanatus HOM05D004952 ORTHO05D006131 1.8e-231 806.6 842 53.2
Eucgr.F02379 Eucalyptus grandis HOM05D004952 ORTHO05D006131 1.8e-231 806.6 835 53.9
Psat5g044920 Pisum sativum HOM05D004952 ORTHO05D006131 2.4e-231 806.2 834 53.8
Sabra16G0008200 Salix brachista HOM05D004952 ORTHO05D006131 1.3e-229 800.4 864 53.1
PGSC0003DMG400008031 Solanum tuberosum HOM05D004952 ORTHO05D006131 2.2e-229 799.7 857 51.8
COL.COLO4_06475 Corchorus olitorius HOM05D004952 ORTHO05D006131 7.2e-228 794.7 833 53.2
Aqoxy6G00884 Aquilegia oxysepala HOM05D004952 ORTHO05D006131 6.1e-227 791.6 835 52.2
Manes.10G059950 Manihot esculenta HOM05D004952 ORTHO05D006131 1.8e-226 790.0 809 55.4
HanXRQChr02g0059171 Helianthus annuus HOM05D004952 ORTHO05D006131 3.0e-226 789.3 842 51.8
PGR031G2121 Punica granatum HOM05D004952 ORTHO05D006131 5.1e-226 788.5 837 51.1
Sopen04g033000 Solanum pennellii HOM05D004952 ORTHO05D006131 9.7e-225 784.3 856 51.8
Sc18g0002370 Simmondsia chinensis HOM05D004952 ORTHO05D006131 1.3e-224 783.9 827 51.8
Solyc04g079390.3 Solanum lycopersicum HOM05D004952 ORTHO05D006131 8.2e-224 781.2 856 51.6
MSTRG.25114 Avicennia marina HOM05D004952 ORTHO05D006131 1.8e-223 780.0 838 50.8
vmacro02786 Vaccinium macrocarpon HOM05D004952 ORTHO05D006131 4.1e-223 778.9 833 52.0
PSO063G1848 Papaver somniferum HOM05D004952 ORTHO05D006131 7.7e-222 774.6 854 50.2
Nitab4.5_0000068g0320 Nicotiana tabacum HOM05D004952 ORTHO05D006131 1.4e-220 770.4 856 50.7
GSVIVG01009573001 Vitis vinifera HOM05D004952 ORTHO05D006131 6.1e-219 765.0 823 51.5
TAR625G1292 Trochodendron aralioides HOM05D004952 ORTHO05D006131 6.7e-218 761.5 831 50.7
Actinidia03540 Actinidia chinensis HOM05D004952 ORTHO05D006131 1.1e-217 760.8 833 51.1
CSS0007693 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 6.9e-215 751.5 1068 43.5
Lsat_1_v5_gn_6_69040 Lactuca sativa HOM05D004952 ORTHO05D006131 6.9e-215 751.5 839 50.4
EL10Ac2g03413 Beta vulgaris HOM05D004952 ORTHO05D006131 1.0e-213 747.7 850 50.7
Prupe.1G389900 Prunus persica HOM05D004952 ORTHO05D006131 6.5e-213 745.0 715 57.5
Peaxi162Scf01092g00128 Petunia axillaris HOM05D004952 ORTHO05D006131 1.1e-212 744.2 847 49.6
Migut.C00614 Erythranthe guttata HOM05D004952 ORTHO05D006131 1.9e-212 743.4 828 50.5
MELO3C016726.2 Cucumis melo HOM05D004952 ORTHO05D006131 5.5e-212 741.9 868 49.7
Oeu055752.1 Olea europaea HOM05D004952 ORTHO05D006131 7.2e-212 741.5 836 49.9
DCAR_008784 Daucus carota HOM05D004952 ORTHO05D006131 3.9e-210 735.7 831 50.2
Haze_25582 Corylus avellana HOM05D004952 ORTHO05D006131 2.6e-209 733.0 874 49.1
Hund10174 Selenicereus undatus HOM05D004952 ORTHO05D006131 9.7e-209 731.1 811 50.7
Nitab4.5_0012613g0030 Nicotiana tabacum HOM05D004952 ORTHO05D006131 1.3e-208 730.7 856 49.3
TPR.G26027 Trifolium pratense HOM05D004952 ORTHO05D006131 3.2e-204 716.1 700 55.0
SalBow7G3268 Salvia bowleyana HOM05D004952 ORTHO05D006131 2.7e-203 713.0 853 48.1
BcaC08g45301 Brassica carinata HOM05D004952 ORTHO05D006131 1.3e-200 704.1 681 59.8
Manes.02G076400 Manihot esculenta HOM05D004952 ORTHO05D006131 6.5e-197 691.8 665 56.4
ECA240G1628 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.1e-195 685.3 811 50.1
AUR62038364 Chenopodium quinoa HOM05D004952 ORTHO05D006131 7.5e-193 678.3 795 49.7
Os12g0606100 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 1.1e-191 674.5 866 45.6
Os02g0523300 Oryza sativa ssp. japonica HOM05D004952 ORTHO05D006131 4.1e-191 672.5 866 45.4
AUR62040965 Chenopodium quinoa HOM05D004952 ORTHO05D006131 8.5e-189 664.8 785 49.9
ATR0706G013 Amborella trichopoda HOM05D004952 ORTHO05D006131 3.6e-187 659.4 867 46.7
Zm00001eb327280 Zea mays HOM05D004952 ORTHO05D006131 1.2e-185 654.4 851 44.9
SHI13748 Sapria himalayana HOM05D004952 ORTHO05D006131 5.7e-185 652.1 873 45.7
BolC6t38070H Brassica oleracea HOM05D004952 ORTHO05D006131 9.8e-185 651.4 527 68.5
PSO339G5893 Papaver somniferum HOM05D004952 ORTHO05D006131 6.8e-178 628.6 672 51.0
Cc10_g03830 Coffea canephora HOM05D004952 ORTHO05D006131 5.4e-175 619.0 691 50.1
FAN20G1371 Fragaria x ananassa HOM05D004952 ORTHO05D006131 1.2e-166 591.3 718 49.9
Oeu007037.1 Olea europaea HOM05D004952 ORTHO05D006131 1.7e-165 587.4 822 44.3
Hma1.2p1_0260F.1_g104660 Hydrangea macrophylla HOM05D004952 ORTHO05D006131 3.2e-159 566.6 564 55.9
Dinv39342 Davidia involucrata HOM05D004952 ORTHO05D006131 2.3e-157 560.5 604 52.8
Cc00_g16150 Coffea canephora HOM05D004952 ORTHO05D006131 9.2e-151 538.5 603 50.7
SGA_v2.0_scaffold156G37306 Striga asiatica HOM05D004952 ORTHO05D006131 7.3e-148 528.9 836 41.4
Potri.016G000100 Populus trichocarpa HOM05D004952 ORTHO05D006131 2.6e-137 493.8 598 48.8
CSS0048180 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 9.3e-127 458.8 617 44.9
HPP92_010073 Vanilla planifolia HOM05D004952 ORTHO05D006131 2.7e-126 457.2 770 38.8
SEGI_19344 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 1.6e-115 421.4 769 39.3
Mapoly0015s0183 Marchantia polymorpha HOM05D004952 ORTHO05D006131 4.1e-114 416.8 945 33.7
Cc00_g35230 Coffea canephora HOM05D004952 ORTHO05D006131 3.8e-112 410.2 316 66.1
Cc00_g35300 Coffea canephora HOM05D004952 ORTHO05D006131 1.6e-110 404.8 296 69.3
Pp3c13_8820 Physcomitrium patens HOM05D004952 ORTHO05D006131 3.6e-110 403.7 976 32.1
AagrBONN_evm.TU.Sc2ySwM_344.3827 Anthoceros agrestis HOM05D004952 ORTHO05D006131 1.5e-92 345.1 849 32.4
SEGI_10220 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 5.0e-88 330.1 387 49.1
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 5.7e-84 316.6 302 55.3
C06p29070 Brassica napus HOM05D002649 ORTHO05D002838 1.6e-81 308.5 312 58.0
Potri.014G184801 Populus trichocarpa HOM05D004952 ORTHO05D006131 2.2e-80 304.7 266 61.3
CDE04G1747 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 3.0e-69 267.7 367 43.6
CBR_g22067 Chara braunii HOM05D004952 ORTHO05D006131 2.0e-68 265.0 1170 25.7
SEGI_09331 Sequoiadendron giganteum HOM05D004952 ORTHO05D006131 2.6e-52 211.5 294 42.9
unitig_0.g725 Utricularia gibba HOM05D004952 ORTHO05D006131 8.6e-48 196.4 260 43.5
Glyma.04G036340 Glycine max HOM05D004952 ORTHO05D006131 6.4e-43 180.3 169 58.0
CSS0028060 Camellia sinensis var. sinensis HOM05D004952 ORTHO05D006131 4.6e-41 174.1 130 71.5
C06p29060 Brassica napus HOM05D004952 ORTHO05D006131 3.4e-36 157.9 222 47.7
BolC6t38069H Brassica oleracea HOM05D004952 ORTHO05D006131 1.2e-28 132.9 84 77.4
Glyma.04G036420 Glycine max HOM05D004952 ORTHO05D006131 5.6e-23 114.0 89 61.8
Potri.014G184701 Populus trichocarpa HOM05D004952 ORTHO05D006131 3.6e-22 111.3 61 82.0
Ah.16g107230 Amaranthus hybridus HOM05D004952 ORTHO05D006131 1.9e-18 99.0 103 52.4
Glyma.04G036380 Glycine max HOM05D004952 ORTHO05D006131 4.6e-17 94.4 105 48.6
CBR_g19823 Chara braunii HOM05D004952 ORTHO05D000937 3.9e-16 91.3 171 32.7
SGA_v2.0_scaffold5008G54579 Striga asiatica HOM05D004952 ORTHO05D006131 5.6e-15 87.4 90 53.3
Carub.0005s2407 Capsella rubella HOM05D004952 ORTHO05D006131 1.3e-14 86.3 96 54.2
MELO3C010311.2 Cucumis melo HOM05D004952 ORTHO05D006131 3.1e-13 81.6 55 69.1
MCO11G910 Micromonas commoda HOM05D004952 ORTHO05D006131 3.4e-12 78.2 242 26.4
MBI13_g43601_MAGBIO Magnolia biondii HOM05D004952 ORTHO05D018024 5.8e-12 77.4 62 56.5
Haze_25585 Corylus avellana HOM05D004952 ORTHO05D006131 9.9e-12 76.6 62 61.3
CDE04G0120 Ceratophyllum demersum HOM05D004952 ORTHO05D006131 1.1e-10 73.2 60 60.0
MBI03_g03594_MAGBIO Magnolia biondii HOM05D003757 ORTHO05D018024 6.7e-08 63.9 44 63.6
MELO3C016650.2 Cucumis melo HOM05D004952 ORTHO05D006131 1.9e-07 62.4 53 62.3
MBI19_g46141_MAGBIO Magnolia biondii HOM05D003757 ORTHO05D018024 1.9e-07 62.4 88 36.4


User provided reference genes

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