Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 4.6e-298 1027.3 590 100.0
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 2.1e-266 922.2 605 91.1
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 5.0e-244 847.8 617 84.4
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.2e-234 816.6 592 84.6
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 2.3e-233 812.4 532 84.0
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 2.9e-220 768.8 444 89.9
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 2.7e-213 745.7 434 86.4
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 5.2e-209 731.5 431 86.5
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 2.6e-208 729.2 461 81.6
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 8.3e-199 697.6 421 84.3
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 1.6e-194 683.3 386 87.0
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 8.1e-178 627.9 523 67.1
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 8.1e-178 627.9 523 68.3
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 1.8e-177 626.7 523 68.1
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 3.4e-176 622.5 524 68.1
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 1.2e-173 614.0 509 67.2
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 7.8e-173 611.3 522 67.0
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.7e-172 610.1 512 65.4
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 3.9e-172 609.0 522 66.9
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 5.1e-172 608.6 522 66.7
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 2.0e-168 596.7 532 62.2
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 5.8e-168 595.1 528 65.9
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 1.7e-167 593.6 528 65.7
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 4.9e-167 592.0 521 65.3
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 6.4e-167 591.7 519 64.0
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 8.4e-167 591.3 524 66.4
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.4e-166 590.5 528 65.3
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 1.9e-166 590.1 523 63.7
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 4.2e-166 589.0 514 64.8
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 7.1e-166 588.2 481 67.2
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 7.1e-166 588.2 528 65.5
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 9.3e-166 587.8 530 60.8
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 1.2e-165 587.4 481 64.2
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 1.6e-165 587.0 478 67.6
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 2.7e-165 586.3 525 65.1
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 3.5e-165 585.9 422 69.9
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 4.6e-165 585.5 537 61.8
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 6.0e-165 585.1 462 69.3
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.7e-164 583.6 530 64.7
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 1.7e-164 583.6 514 64.4
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 2.3e-164 583.2 481 66.5
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 8.7e-164 581.3 537 61.8
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 7.3e-163 578.2 525 61.3
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 9.6e-163 577.8 522 64.6
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 2.1e-162 576.6 478 66.5
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 2.8e-162 576.2 514 64.8
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 2.8e-162 576.2 514 63.4
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 1.1e-161 574.3 528 60.0
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 1.1e-161 574.3 522 60.7
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 1.4e-161 573.9 522 65.3
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 3.1e-161 572.8 517 62.5
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 2.6e-160 569.7 420 68.6
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 5.8e-160 568.5 521 61.8
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 7.6e-160 568.2 516 60.9
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 9.9e-160 567.8 420 68.1
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 1.3e-159 567.4 475 66.1
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 1.4e-158 563.9 532 63.2
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 1.4e-158 563.9 523 58.9
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.4e-158 563.9 515 61.6
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 3.2e-158 562.8 511 63.6
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 3.5e-157 559.3 477 62.3
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 7.9e-157 558.1 520 61.5
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 1.0e-156 557.8 444 65.8
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 1.0e-156 557.8 423 67.4
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 6.7e-156 555.1 377 71.9
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 8.7e-156 554.7 421 67.5
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 4.3e-155 552.4 481 63.4
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 5.6e-155 552.0 519 59.2
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 6.2e-154 548.5 506 60.9
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 2.4e-153 546.6 522 60.3
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 1.2e-152 544.3 524 58.2
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 1.5e-152 543.9 553 58.6
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 6.4e-151 538.5 531 61.4
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 1.9e-150 537.0 528 59.8
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 9.3e-150 534.6 577 55.8
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 2.7e-149 533.1 479 60.8
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 1.8e-148 530.4 477 61.6
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 2.3e-148 530.0 481 60.7
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 3.0e-148 529.6 420 65.2
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 1.5e-147 527.3 394 68.0
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 4.3e-147 525.8 466 60.5
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 6.2e-146 521.9 482 60.4
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 6.2e-146 521.9 511 58.9
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 1.8e-145 520.4 511 58.7
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 4.0e-145 519.2 520 56.3
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.7e-143 513.8 522 58.0
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 2.2e-143 513.5 516 59.5
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 2.9e-143 513.1 426 62.7
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 6.5e-143 511.9 492 60.8
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 1.4e-142 510.8 522 57.1
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 1.4e-142 510.8 512 58.8
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 3.5e-141 506.1 518 54.2
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 3.5e-141 506.1 522 57.7
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 3.9e-140 502.7 358 73.2
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 1.9e-139 500.4 514 56.6
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 4.3e-139 499.2 463 57.7
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 1.4e-137 494.2 538 54.1
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 5.3e-137 492.3 481 56.5
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 6.9e-137 491.9 523 55.3
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 1.5e-136 490.7 469 59.5
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 6.5e-135 485.3 454 59.9
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 2.5e-134 483.4 481 58.0
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 3.2e-134 483.0 494 53.2
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 3.9e-132 476.1 518 51.5
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 1.1e-131 474.6 437 57.7
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 3.7e-130 469.5 431 57.3
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 4.2e-126 456.1 440 55.5
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 5.1e-124 449.1 421 56.5
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 2.2e-122 443.7 377 61.3
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.5e-120 437.6 401 56.6
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.3e-119 434.5 222 97.3
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 3.0e-116 423.3 523 49.9
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 1.1e-115 421.4 386 65.8
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 1.2e-109 401.4 316 62.0
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 3.3e-107 393.3 418 51.0
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 5.3e-105 386.0 351 63.8
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 8.5e-103 378.6 378 53.7
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 3.0e-100 370.2 349 57.3
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 3.7e-98 363.2 346 54.9
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 7.0e-97 359.0 412 48.5
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 2.3e-92 344.0 186 90.9
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 1.7e-82 311.2 472 45.8
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 3.5e-80 303.5 348 48.0
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 8.0e-77 292.4 352 45.5
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 9.8e-75 285.4 288 59.7
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 2.4e-73 280.8 212 68.4
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 1.6e-69 268.1 365 43.6
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 1.1e-65 255.4 275 80.0
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 9.5e-62 242.3 445 38.9
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 1.4e-60 238.4 266 58.3
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 1.6e-48 198.4 194 52.1
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 6.9e-44 183.0 194 52.6
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 1.9e-41 174.9 518 28.0
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 1.4e-33 148.7 170 48.8
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 3.0e-31 141.0 118 60.2
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 1.1e-30 139.0 118 58.5
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 1.9e-25 121.7 95 62.1
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 1.8e-23 115.2 87 64.4
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 6.7e-23 113.2 256 30.9
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 4.8e-21 107.1 106 57.5
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 1.4e-20 105.5 355 26.5
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 8.5e-18 96.3 117 53.0
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 3.6e-16 90.9 161 36.0
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 7.4e-14 83.2 122 41.8
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 3.1e-12 77.8 105 44.8
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 4.2e-09 67.4 99 41.4
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 1.8e-07 62.0 44 63.6
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 9.7e-06 56.2 43 62.8


User provided reference genes

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