Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G77090 Arabidopsis thaliana HOM05D006773 ORTHO05D008775 1.8e-150 535.8 261 100.0
Sp5g32210 Schrenkiella parvula HOM05D006773 ORTHO05D008775 2.1e-130 469.2 267 88.4
Thhalv10019004m.g Eutrema salsugineum HOM05D006773 ORTHO05D008775 4.7e-130 468.0 270 86.3
Thhalv10000289m.g Eutrema salsugineum HOM05D006773 ORTHO05D008775 4.4e-128 461.5 269 87.0
BraA07t31788Z Brassica rapa HOM05D006773 ORTHO05D008775 1.3e-127 459.9 267 86.9
CARHR070570 Cardamine hirsuta HOM05D006773 ORTHO05D008775 1.7e-127 459.5 262 87.8
AL2G37260 Arabidopsis lyrata HOM05D006773 ORTHO05D008775 2.4e-126 455.7 264 87.1
A07p42660 Brassica napus HOM05D006773 ORTHO05D008775 3.2e-126 455.3 268 85.8
BcaC08g47206 Brassica carinata HOM05D006773 ORTHO05D008775 4.1e-126 454.9 268 85.8
C06p51250 Brassica napus HOM05D006773 ORTHO05D008775 4.1e-126 454.9 268 85.8
Aa31LG4G7120 Aethionema arabicum HOM05D006773 ORTHO05D008775 1.9e-123 446.0 262 82.8
Carub.0002s2397 Capsella rubella HOM05D006773 ORTHO05D008775 2.0e-120 436.0 262 84.4
THA.LOC104813693 Tarenaya hassleriana HOM05D006773 ORTHO05D008775 3.9e-116 421.8 266 79.3
Migut.N03240 Erythranthe guttata HOM05D006773 ORTHO05D008775 1.3e-103 380.2 254 73.6
CANSAT25G3413 Cannabis sativa HOM05D006773 ORTHO05D008775 1.7e-103 379.8 226 80.5
Haze_17696 Corylus avellana HOM05D006773 ORTHO05D005980 2.2e-103 379.4 227 80.6
Thecc.08G143200 Theobroma cacao HOM05D006773 ORTHO05D008775 2.2e-103 379.4 226 81.4
Cfa018374 Carpinus fangiana HOM05D006773 ORTHO05D008775 2.9e-103 379.0 221 82.4
Ciclev10002228m.g Citrus clementina HOM05D006773 ORTHO05D008775 4.9e-103 378.3 218 83.5
Manes.02G174300 Manihot esculenta HOM05D006773 ORTHO05D008775 4.9e-103 378.3 215 84.2
Atru.chr13.1690 Acer truncatum HOM05D006773 ORTHO05D008775 6.4e-103 377.9 217 82.9
Dinv25798 Davidia involucrata HOM05D006773 ORTHO05D008775 6.4e-103 377.9 250 74.4
Gohir.A02G067200 Gossypium hirsutum HOM05D006773 ORTHO05D008775 3.2e-102 375.6 275 69.5
Gohir.D02G073400 Gossypium hirsutum HOM05D006773 ORTHO05D008775 4.2e-102 375.2 275 68.7
vmacro00729 Vaccinium macrocarpon HOM05D006773 ORTHO05D008775 4.2e-102 375.2 218 82.6
Duzib093G1219 Durio zibethinus HOM05D006773 ORTHO05D008775 5.5e-102 374.8 241 76.8
Phvul.009G134500 Phaseolus vulgaris HOM05D006773 ORTHO05D008775 7.1e-102 374.4 224 79.5
GSVIVG01010018001 Vitis vinifera HOM05D006773 ORTHO05D008775 1.2e-101 373.6 237 78.5
Gorai.005G082800 Gossypium raimondii HOM05D006773 ORTHO05D008775 2.1e-101 372.9 275 68.7
MSTRG.22383 Avicennia marina HOM05D006773 ORTHO05D008775 2.7e-101 372.5 217 82.0
MD10G1012400 Malus domestica HOM05D006773 ORTHO05D008775 3.5e-101 372.1 268 70.5
TAR625G1315 Trochodendron aralioides HOM05D006773 ORTHO05D008775 3.5e-101 372.1 244 75.0
Rhsim09G0002200 Rhododendron simsii HOM05D006773 ORTHO05D008775 4.6e-101 371.7 210 84.3
Actinidia16591 Actinidia chinensis HOM05D006773 ORTHO05D008775 6.0e-101 371.3 277 68.6
Sabra02G0057000 Salix brachista HOM05D006773 ORTHO05D008775 6.0e-101 371.3 247 74.1
COL.COLO4_33185 Corchorus olitorius HOM05D006773 ORTHO05D008775 7.9e-101 370.9 233 79.4
QL09p028661 Quercus lobata HOM05D006773 ORTHO05D008775 7.9e-101 370.9 231 78.4
Prupe.8G017800 Prunus persica HOM05D006773 ORTHO05D008775 1.0e-100 370.5 225 80.0
VMungo1309G1948 Vigna mungo HOM05D006773 ORTHO05D008775 2.3e-100 369.4 223 78.9
Cc10_g12990 Coffea canephora HOM05D006773 ORTHO05D008775 3.9e-100 368.6 224 78.6
Potri.002G072400 Populus trichocarpa HOM05D006773 ORTHO05D008775 3.9e-100 368.6 251 73.7
RcHm_v2.0_Chr6g0277361 Rosa chinensis HOM05D006773 ORTHO05D008775 8.7e-100 367.5 225 79.1
Glyma.06G122400 Glycine max HOM05D006773 ORTHO05D008775 2.5e-99 365.9 226 77.9
CiPaw.15G022300 Carya illinoinensis HOM05D006773 ORTHO05D008775 3.3e-99 365.5 264 69.7
arahy.Tifrunner.gnm1.ann1.85NLUF Arachis hypogaea HOM05D006773 ORTHO05D008775 7.4e-99 364.4 217 79.3
EL10Ac1g01469 Beta vulgaris HOM05D006773 ORTHO05D008775 9.6e-99 364.0 221 81.9
MD05G1012500 Malus domestica HOM05D006773 ORTHO05D008775 9.6e-99 364.0 226 78.8
TWI60G1234 Tripterygium wilfordii HOM05D006773 ORTHO05D008775 9.6e-99 364.0 225 79.1
ATR1136G180 Amborella trichopoda HOM05D006773 ORTHO05D008775 1.3e-98 363.6 224 78.6
Oeu025718.1 Olea europaea HOM05D006773 ORTHO05D008775 1.3e-98 363.6 225 79.1
Ca_16660_v3 Cicer arietinum L. HOM05D006773 ORTHO05D008775 1.6e-98 363.2 218 79.4
ClCG09G009710 Citrullus lanatus HOM05D006773 ORTHO05D008775 2.1e-98 362.8 245 73.5
Lalb_Chr08g0240801 Lupinus albus HOM05D006773 ORTHO05D008775 2.1e-98 362.8 217 80.2
Medtr3g089890 Medicago truncatula HOM05D006773 ORTHO05D008775 2.1e-98 362.8 225 76.9
SalBow6G0822 Salvia bowleyana HOM05D006773 ORTHO05D008775 8.1e-98 360.9 247 72.5
AUR62013482 Chenopodium quinoa HOM05D006773 ORTHO05D008775 1.4e-97 360.1 221 80.1
FvH4_2g14791 Fragaria vesca HOM05D006773 ORTHO05D008775 1.4e-97 360.1 225 77.8
FAN15G2829 Fragaria x ananassa HOM05D006773 ORTHO05D008775 1.4e-97 360.1 225 77.8
MELO3C023682.2 Cucumis melo HOM05D006773 ORTHO05D008775 1.8e-97 359.8 246 72.8
Glyma.04G241000 Glycine max HOM05D006773 ORTHO05D008775 1.8e-97 359.8 214 79.4
Nitab4.5_0000445g0090 Nicotiana tabacum HOM05D006773 ORTHO05D008775 2.4e-97 359.4 217 78.3
Solyc04g064670.3 Solanum lycopersicum HOM05D006773 ORTHO05D008775 2.4e-97 359.4 222 77.0
PGSC0003DMG401024815 Solanum tuberosum HOM05D006773 ORTHO05D008775 2.4e-97 359.4 222 77.0
AUR62026790 Chenopodium quinoa HOM05D006773 ORTHO05D008775 4.0e-97 358.6 221 79.2
Nitab4.5_0004095g0010 Nicotiana tabacum HOM05D006773 ORTHO05D008775 4.0e-97 358.6 223 77.1
CAN.G2.47 Capsicum annuum HOM05D006773 ORTHO05D008775 9.0e-97 357.5 223 77.6
Atru.BG.245.p Acer truncatum HOM05D006773 ORTHO05D008775 1.5e-96 356.7 227 76.2
Eucgr.F02746 Eucalyptus grandis HOM05D006773 ORTHO05D008775 1.5e-96 356.7 218 78.9
Lsat_1_v5_gn_6_96860 Lactuca sativa HOM05D006773 ORTHO05D008775 2.6e-96 355.9 243 71.2
Peaxi162Scf00263g00028 Petunia axillaris HOM05D006773 ORTHO05D008775 3.4e-96 355.5 214 78.0
CsaV3_7G025030 Cucumis sativus L. HOM05D006773 ORTHO05D008775 5.8e-96 354.8 246 71.1
Lj7C363G2 Lonicera japonica HOM05D006773 ORTHO05D008775 1.0e-95 354.0 219 79.0
HanXRQChr05g0160801 Helianthus annuus HOM05D006773 ORTHO05D008775 2.2e-95 352.8 226 75.7
ECA246G0400 Erigeron canadensis HOM05D006773 ORTHO05D005980 4.9e-95 351.7 255 68.6
Sc20g0003340 Simmondsia chinensis HOM05D006773 ORTHO05D008775 4.9e-95 351.7 252 69.8
PGR042G0338 Punica granatum HOM05D006773 ORTHO05D008775 8.4e-95 350.9 256 71.9
DCAR_031498 Daucus carota HOM05D006773 ORTHO05D008775 2.5e-94 349.4 250 69.6
Ah.16g108660 Amaranthus hybridus HOM05D006773 ORTHO05D008775 3.2e-94 349.0 233 73.4
PSO541G0390 Papaver somniferum HOM05D006773 ORTHO05D008775 9.3e-94 347.4 241 71.0
Hund17393 Selenicereus undatus HOM05D006773 ORTHO05D008775 9.3e-94 347.4 269 66.9
PSO675G5006 Papaver somniferum HOM05D006773 ORTHO05D008775 1.6e-93 346.7 241 70.5
FAN24G0253 Fragaria x ananassa HOM05D006773 ORTHO05D005980 1.3e-92 343.6 225 76.0
MBI06_g35966_MAGBIO Magnolia biondii HOM05D006773 ORTHO05D008775 5.7e-91 338.2 197 81.7
Cpa.g.sc49.74 Carica papaya HOM05D006773 ORTHO05D008775 2.1e-90 336.3 210 79.5
Psat5g080880 Pisum sativum HOM05D006773 ORTHO05D008775 4.5e-88 328.6 197 79.2
SGA_v2.0_scaffold19G08634 Striga asiatica HOM05D006773 ORTHO05D008775 4.5e-88 328.6 177 85.9
HPP92_004476 Vanilla planifolia HOM05D006773 ORTHO05D008775 2.2e-87 326.2 218 72.9
Os12g0190200 Oryza sativa ssp. japonica HOM05D006773 ORTHO05D008775 4.2e-86 322.0 233 68.7
TPR.G18761 Trifolium pratense HOM05D006773 ORTHO05D008775 9.3e-86 320.9 203 76.4
FvH4_7g25010 Fragaria vesca HOM05D006773 ORTHO05D008775 2.5e-83 312.8 215 72.1
arahy.Tifrunner.gnm1.ann1.61R3GI Arachis hypogaea HOM05D006773 ORTHO05D008775 3.7e-82 308.9 172 82.0
Sed0012245 Sechium edule HOM05D006773 ORTHO05D008775 3.7e-82 308.9 174 82.8
Nn5g28592 Nelumbo nucifera HOM05D006773 ORTHO05D008775 4.8e-82 308.5 173 85.5
unitig_52.g17539 Utricularia gibba HOM05D006773 ORTHO05D008775 3.4e-80 302.4 169 83.4
Sopen04g026630 Solanum pennellii HOM05D006773 ORTHO05D008775 5.9e-80 301.6 170 81.2
Pp3c1_24790 Physcomitrium patens HOM05D006773 ORTHO05D008775 1.0e-79 300.8 239 60.7
MBI06_g41413_MAGBIO Magnolia biondii HOM05D006773 ORTHO05D008775 2.2e-79 299.7 178 80.9
Mapoly0002s0218 Marchantia polymorpha HOM05D006773 ORTHO05D008775 1.4e-76 290.4 240 60.4
AagrBONN_evm.TU.Sc2ySwM_344.1575 Anthoceros agrestis HOM05D006773 ORTHO05D008775 5.7e-75 285.0 251 59.4
SMO270G0074 Selaginella moellendorffii HOM05D006773 ORTHO05D008775 6.3e-66 255.0 168 69.6
HPP92_004480 Vanilla planifolia HOM05D006773 ORTHO05D008775 1.6e-61 240.4 218 56.9
FAN06G4159 Fragaria x ananassa HOM05D006773 ORTHO05D008775 5.2e-60 235.3 173 69.4
Cre03.g198950 Chlamydomonas reinhardtii HOM05D006773 ORTHO05D008775 1.4e-52 210.7 213 51.2
CSS0027898 Camellia sinensis var. sinensis HOM05D006773 ORTHO05D008775 9.8e-51 204.5 120 82.5
SMO367G0103 Selaginella moellendorffii HOM05D006773 ORTHO05D008775 1.2e-43 181.0 134 62.7
PSO017G5067 Papaver somniferum HOM05D006773 ORTHO05D008775 7.5e-43 178.3 111 76.6
CSS0029334 Camellia sinensis var. sinensis HOM05D006773 ORTHO05D008775 3.1e-41 172.9 98 83.7
SEGI_34187 Sequoiadendron giganteum HOM05D006773 ORTHO05D008775 3.3e-38 162.9 102 76.5
MCO01G018 Micromonas commoda HOM05D006773 ORTHO05D008775 1.6e-37 160.6 213 42.3
PRCOL_00003420 Prasinoderma coloniale HOM05D006773 ORTHO05D008775 4.4e-35 152.5 223 40.8
Hma1.2p1_1563F.1_g290820 Hydrangea macrophylla HOM05D006773 ORTHO05D008775 8.0e-29 131.7 74 85.1
CBR_g39641 Chara braunii HOM05D006773 ORTHO05D008775 1.4e-25 120.9 96 57.3
ATR1136G134 Amborella trichopoda HOM05D006773 ORTHO05D008775 6.6e-23 112.1 60 81.7
AagrBONN_evm.TU.Sc2ySwM_368.1623 Anthoceros agrestis HOM05D006773 ORTHO05D008775 3.4e-19 99.8 212 33.5
Medtr6g018710 Medicago truncatula HOM05D006773 ORTHO05D008775 8.3e-18 95.1 62 71.0
CBR_g17613 Chara braunii HOM05D007080 ORTHO05D008990 1.1e-17 94.7 162 33.3
FAN28G0517 Fragaria x ananassa HOM05D007080 ORTHO05D008990 2.1e-16 90.5 160 31.9
MD03G1200900 Malus domestica HOM05D007080 ORTHO05D008990 2.7e-16 90.1 160 32.5
Prupe.4G213200 Prunus persica HOM05D007080 ORTHO05D008990 2.7e-16 90.1 160 32.5
FvH4_1g28660 Fragaria vesca HOM05D007080 ORTHO05D008990 3.5e-16 89.7 255 27.5
FAN19G3092 Fragaria x ananassa HOM05D007080 ORTHO05D008990 6.0e-16 89.0 255 27.5
RcHm_v2.0_Chr3g0492671 Rosa chinensis HOM05D007080 ORTHO05D008990 6.0e-16 89.0 154 32.5
Thhalv10006177m.g Eutrema salsugineum HOM05D007080 ORTHO05D008990 7.8e-16 88.6 160 30.6
FAN26G2541 Fragaria x ananassa HOM05D007080 ORTHO05D008990 7.8e-16 88.6 255 28.2
AL5G38020 Arabidopsis lyrata HOM05D007080 ORTHO05D008990 1.0e-15 88.2 160 30.0
RcHm_v2.0_Chr3g0492661 Rosa chinensis HOM05D007080 ORTHO05D008990 1.0e-15 88.2 241 27.0
Migut.K00153 Erythranthe guttata HOM05D007080 ORTHO05D008990 2.3e-15 87.0 160 28.8
Pp3c4_10510 Physcomitrium patens HOM05D007080 ORTHO05D008990 2.3e-15 87.0 160 33.1
CARHR166760 Cardamine hirsuta HOM05D007080 ORTHO05D008990 3.0e-15 86.7 160 28.8
Mapoly0008s0145 Marchantia polymorpha HOM05D007080 ORTHO05D008990 3.0e-15 86.7 239 26.8
SMO347G0313 Selaginella moellendorffii HOM05D007080 ORTHO05D008990 3.0e-15 86.7 159 30.8
Carub.0005s2340 Capsella rubella HOM05D007080 ORTHO05D008990 3.9e-15 86.3 160 28.8
Gohir.A13G109100 Gossypium hirsutum HOM05D007080 ORTHO05D008990 3.9e-15 86.3 160 30.0
Gohir.D13G111900 Gossypium hirsutum HOM05D007080 ORTHO05D008990 3.9e-15 86.3 160 30.0
Gorai.013G125600 Gossypium raimondii HOM05D007080 ORTHO05D008990 3.9e-15 86.3 160 30.0
Potri.006G034300 Populus trichocarpa HOM05D007080 ORTHO05D008990 5.1e-15 85.9 160 30.0
AT3G56650 Arabidopsis thaliana HOM05D007080 ORTHO05D008990 6.6e-15 85.5 160 28.8
A04p03450 Brassica napus HOM05D007080 ORTHO05D008990 8.6e-15 85.1 160 28.1
BraA04t16092Z Brassica rapa HOM05D007080 ORTHO05D008990 8.6e-15 85.1 160 28.1
Sabra06G0022700 Salix brachista HOM05D007080 ORTHO05D008990 1.1e-14 84.7 160 30.0
BcaC02g09857 Brassica carinata HOM05D007080 ORTHO05D008990 1.5e-14 84.3 160 28.1
C04p35850 Brassica napus HOM05D007080 ORTHO05D008990 1.5e-14 84.3 160 28.1
BolC4t25215H Brassica oleracea HOM05D007080 ORTHO05D008990 1.5e-14 84.3 160 28.1
AagrBONN_evm.TU.Sc2ySwM_228.1885 Anthoceros agrestis HOM05D007080 ORTHO05D008990 2.5e-14 83.6 160 30.6
BcaB02g08359 Brassica carinata HOM05D007080 ORTHO05D008990 3.3e-14 83.2 160 28.1
MCO07G710 Micromonas commoda HOM05D006773 ORTHO05D269516 2.1e-13 80.5 157 34.4
BolC6t40147H Brassica oleracea HOM05D006773 ORTHO05D008775 3.8e-10 69.7 73 58.9
Pp3c2_15810 Physcomitrium patens HOM05D006773 ORTHO05D316139 1.9e-06 57.4 109 38.5


User provided reference genes

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