Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 7.6e-200 700.3 351 100.0
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 2.0e-192 675.6 351 94.0
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 1.1e-190 669.8 351 93.2
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 5.7e-187 657.5 351 94.0
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 7.4e-187 657.1 351 90.9
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 1.3e-186 656.4 351 93.4
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 1.3e-186 656.4 351 93.7
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 1.4e-185 652.9 351 90.3
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 1.4e-185 652.9 351 90.3
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 1.8e-185 652.5 351 93.4
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 9.0e-185 650.2 351 90.6
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 2.2e-183 645.6 351 90.0
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 2.3e-172 609.0 350 85.1
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 6.7e-172 607.4 350 84.3
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 4.8e-170 601.3 350 83.1
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 6.3e-170 600.9 350 83.7
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 1.1e-169 600.1 350 83.4
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 1.8e-169 599.4 350 83.4
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 1.8e-169 599.4 350 83.4
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 3.1e-169 598.6 349 83.4
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 7.7e-168 594.0 352 82.4
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 1.1e-166 590.1 352 83.0
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 1.8e-164 582.8 318 92.5
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 9.1e-161 570.5 353 76.5
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 4.2e-158 561.6 352 75.6
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 1.2e-157 560.1 352 76.1
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.2e-157 560.1 352 75.9
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 5.2e-156 554.7 352 75.3
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 1.2e-155 553.5 352 74.4
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 1.5e-155 553.1 352 75.0
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 5.7e-155 551.2 352 74.1
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 7.5e-155 550.8 351 74.6
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 1.3e-154 550.1 351 74.9
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 1.3e-154 550.1 352 74.4
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 1.7e-154 549.7 352 73.6
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 2.8e-154 548.9 352 74.4
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 8.3e-154 547.4 361 74.0
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 1.4e-153 546.6 351 73.2
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 5.3e-153 544.7 351 76.4
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 2.0e-152 542.7 349 75.9
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.7e-152 542.3 352 74.4
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 2.7e-152 542.3 351 72.9
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 4.5e-152 541.6 352 76.4
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 1.3e-151 540.0 352 75.9
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 1.7e-151 539.7 352 73.9
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 1.7e-151 539.7 339 75.5
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 3.8e-151 538.5 339 76.7
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 3.8e-151 538.5 351 74.4
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 3.8e-151 538.5 351 74.4
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 3.2e-150 535.4 352 72.4
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 5.5e-150 534.6 350 72.6
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 7.2e-150 534.3 352 72.7
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 1.2e-149 533.5 354 73.4
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 1.2e-149 533.5 350 71.7
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 1.6e-149 533.1 352 73.3
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 2.1e-149 532.7 352 72.4
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 4.7e-149 531.6 352 72.2
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 4.7e-149 531.6 351 71.5
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 1.4e-148 530.0 351 72.1
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 2.3e-148 529.3 351 71.8
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 3.0e-148 528.9 351 70.9
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 6.8e-148 527.7 352 71.3
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 2.0e-147 526.2 355 70.7
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 4.4e-147 525.0 350 70.3
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 1.7e-146 523.1 350 72.0
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 2.2e-146 522.7 351 69.8
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 2.2e-146 522.7 352 74.1
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 8.3e-146 520.8 351 69.8
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 1.1e-145 520.4 351 69.5
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 1.4e-145 520.0 352 71.0
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 2.4e-145 519.2 351 70.1
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 5.4e-145 518.1 352 70.7
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 1.2e-144 516.9 351 69.5
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 2.7e-144 515.8 351 68.7
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 5.9e-144 514.6 339 74.0
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 1.3e-143 513.5 351 68.4
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 2.3e-143 512.7 353 70.8
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 3.8e-143 511.9 347 70.3
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 6.6e-143 511.1 351 68.7
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 8.6e-143 510.8 339 71.7
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 1.9e-142 509.6 337 72.4
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 4.2e-142 508.4 374 67.4
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 2.8e-141 505.8 319 76.2
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 3.6e-141 505.4 338 69.2
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 8.0e-141 504.2 351 69.8
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 1.0e-140 503.8 337 69.1
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 2.3e-140 502.7 401 64.6
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 7.5e-139 497.7 358 67.9
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 6.3e-138 494.6 319 73.7
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.1e-137 493.8 352 71.9
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 2.0e-136 489.6 294 82.0
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 3.5e-136 488.8 299 80.6
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 3.5e-136 488.8 299 80.6
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 8.6e-135 484.2 407 59.2
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 1.1e-134 483.8 338 69.5
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 3.4e-131 472.2 346 69.9
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 9.2e-129 464.2 295 74.6
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 3.5e-128 462.2 352 60.8
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 3.0e-127 459.1 318 67.9
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 3.9e-127 458.8 319 71.8
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 7.3e-126 454.5 338 63.3
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 4.7e-125 451.8 352 59.9
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 8.9e-124 447.6 309 73.5
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 3.5e-120 435.6 296 74.0
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 3.1e-116 422.5 352 56.2
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 1.9e-113 413.3 322 63.7
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 1.5e-110 403.7 397 53.4
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 4.4e-107 392.1 255 72.9
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 5.8e-107 391.7 263 74.1
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 2.2e-106 389.8 269 67.7
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 1.1e-100 370.9 353 55.2
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 1.4e-97 360.5 223 78.0
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 2.0e-91 340.1 203 81.3
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.0e-87 327.8 201 78.1
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 6.9e-84 315.1 180 83.9
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 1.3e-77 294.3 351 45.0
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 1.0e-74 284.6 231 57.1
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 1.4e-73 280.8 345 40.9
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 1.1e-68 264.6 346 40.8
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 5.0e-66 255.8 158 75.3
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 4.3e-62 242.7 211 60.2
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 4.8e-61 239.2 199 60.8
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 4.7e-48 196.1 144 66.7
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 1.8e-47 194.1 364 30.8
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 5.3e-44 182.6 109 77.1
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.0e-42 178.3 125 67.2
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 2.9e-42 176.8 126 67.5
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 6.1e-40 169.1 87 89.7
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 5.5e-33 146.0 129 56.6
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 3.4e-30 136.7 118 57.6
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 1.9e-25 120.9 308 27.6
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 1.0e-23 115.2 72 68.1
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 2.6e-22 110.5 81 59.3
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 3.4e-22 110.2 76 71.1
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 4.1e-20 103.2 208 33.2
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 7.0e-20 102.4 71 67.6
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.6e-19 101.3 67 70.1
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 7.5e-14 82.4 51 70.6
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 3.7e-13 80.1 60 60.0
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 6.4e-13 79.3 54 70.4
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.4e-12 77.4 44 77.3
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 1.3e-10 71.6 368 23.6
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 5.0e-10 69.7 138 33.3
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 4.7e-08 63.2 42 66.7
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 4.0e-07 60.1 42 64.3
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 8.9e-07 58.9 68 41.2
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 5.8e-06 56.2 47 59.6


User provided reference genes

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