Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 0.0e+00 2693.7 1391 100.0
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 0.0e+00 2593.5 1392 96.3
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 0.0e+00 2473.0 1389 91.6
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 0.0e+00 2440.6 1402 90.0
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 0.0e+00 2394.8 1390 89.1
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 0.0e+00 2381.3 1392 88.4
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 2294.6 1395 86.1
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 0.0e+00 2288.5 1409 85.3
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 0.0e+00 2273.0 1393 85.1
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 0.0e+00 2271.1 1394 85.3
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 0.0e+00 2211.4 1410 82.8
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 0.0e+00 1997.6 1401 75.7
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 0.0e+00 1566.2 1447 60.3
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 0.0e+00 1565.4 1410 61.4
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 0.0e+00 1558.1 1427 59.6
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 0.0e+00 1541.6 1446 58.4
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 0.0e+00 1530.8 1433 59.7
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 0.0e+00 1530.8 1429 58.6
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 0.0e+00 1520.4 1445 59.4
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 0.0e+00 1513.0 1292 61.7
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 0.0e+00 1510.7 1448 58.2
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 0.0e+00 1499.6 1416 59.3
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 0.0e+00 1499.2 1464 58.8
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 0.0e+00 1485.3 1420 58.5
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1481.5 1498 55.2
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1481.1 1436 57.2
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1479.2 1493 56.1
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 0.0e+00 1471.1 1347 59.9
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1470.3 1491 56.3
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1469.9 1491 55.9
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 0.0e+00 1468.0 1491 56.5
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 0.0e+00 1467.2 1425 57.0
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 0.0e+00 1466.8 1427 56.8
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1463.7 1481 55.2
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1463.7 1481 55.2
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 0.0e+00 1462.6 1423 57.6
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 0.0e+00 1461.8 1420 56.9
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 0.0e+00 1460.7 1426 57.7
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 0.0e+00 1454.1 1425 57.4
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1452.6 1424 57.1
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 0.0e+00 1451.0 1420 57.7
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1448.7 1379 57.9
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1448.3 1447 56.0
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 0.0e+00 1446.0 1424 56.7
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 0.0e+00 1445.3 1397 56.8
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1445.3 1377 59.3
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1440.2 1461 55.2
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 0.0e+00 1438.7 1385 56.6
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 0.0e+00 1438.3 1543 53.7
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 0.0e+00 1437.2 1417 56.2
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1429.8 1491 55.4
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 0.0e+00 1429.1 1420 56.4
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1421.4 1426 55.0
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 0.0e+00 1419.4 1457 54.2
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 0.0e+00 1415.2 1439 55.0
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 0.0e+00 1404.8 1441 56.6
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 0.0e+00 1389.8 1373 57.2
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 0.0e+00 1384.0 1415 56.5
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 0.0e+00 1366.3 1477 53.7
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1364.4 1338 56.5
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 0.0e+00 1361.7 1369 53.5
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 0.0e+00 1361.7 1403 54.8
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1361.3 1239 58.3
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 0.0e+00 1357.8 1322 55.6
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 0.0e+00 1354.7 1382 53.1
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1347.8 1296 56.4
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 0.0e+00 1345.1 1296 56.1
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1343.9 1409 56.1
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1338.9 1252 55.8
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1333.9 1448 51.6
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 0.0e+00 1331.6 1039 64.2
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 0.0e+00 1328.9 1297 54.7
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 0.0e+00 1320.8 1261 55.4
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 0.0e+00 1319.3 1231 56.2
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 0.0e+00 1314.7 1513 48.5
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1283.1 1294 53.2
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 0.0e+00 1263.8 1375 53.0
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 0.0e+00 1262.7 1318 53.5
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 0.0e+00 1259.2 1474 50.7
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 0.0e+00 1251.9 1268 52.1
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 0.0e+00 1229.5 1282 52.9
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 0.0e+00 1222.2 1030 59.1
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 0.0e+00 1220.7 1243 54.9
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 0.0e+00 1207.6 1272 54.1
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 0.0e+00 1169.5 1225 51.7
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 0.0e+00 1164.8 1474 45.7
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 0.0e+00 1124.4 1252 51.8
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 0.0e+00 1113.2 1134 56.4
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 0.0e+00 1093.6 851 62.3
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 0.0e+00 1091.3 859 63.3
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1089.7 768 69.4
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 9.5e-312 1074.3 1329 47.5
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 2.7e-301 1039.3 768 66.9
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 8.3e-298 1027.7 863 60.7
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 3.7e-290 1002.3 1031 51.2
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 2.0e-288 996.5 1044 52.1
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 4.4e-283 978.8 1032 51.4
Lj9A432G69 Lonicera japonica HOM05D004216 ORTHO05D004926 1.5e-246 857.4 844 56.0
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 2.8e-245 853.2 1011 47.5
COL.COLO4_22716 Corchorus olitorius HOM05D004216 ORTHO05D004926 2.5e-214 750.4 953 50.9
AagrBONN_evm.TU.Sc2ySwM_117.3880 Anthoceros agrestis HOM05D004216 ORTHO05D004926 2.4e-212 743.8 819 47.9
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 1.8e-207 727.6 481 72.6
Gohir.D07G042740 Gossypium hirsutum HOM05D004216 ORTHO05D004926 7.0e-188 662.5 801 53.4
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 5.9e-179 632.9 811 44.0
COL.COLO4_22715 Corchorus olitorius HOM05D004216 ORTHO05D004926 6.3e-173 612.8 490 64.3
Haze_18611 Corylus avellana HOM05D004216 ORTHO05D004926 1.0e-162 578.9 771 51.6
Haze_18610 Corylus avellana HOM05D004216 ORTHO05D004926 2.5e-161 574.3 771 51.5
SEGI_35421 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 6.8e-143 513.1 498 52.4
Cpa.g.sc1020.1 Carica papaya HOM05D004216 ORTHO05D004926 1.5e-137 495.4 324 71.3
Lj9P432G41 Lonicera japonica HOM05D004216 ORTHO05D004926 7.3e-129 466.5 371 61.5
Cpa.g.sc13.49 Carica papaya HOM05D004216 ORTHO05D004926 3.8e-117 427.6 490 52.4
Os09g0410125 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 9.0e-103 379.8 327 56.6
Gohir.D07G042820 Gossypium hirsutum HOM05D004216 ORTHO05D004926 3.9e-98 364.4 235 75.3
TAR371G0173 Trochodendron aralioides HOM05D004216 ORTHO05D004926 8.8e-90 336.7 294 56.8
Medtr1014s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 8.2e-80 303.5 206 70.4
Cfa022283 Carpinus fangiana HOM05D004216 ORTHO05D004926 3.0e-74 285.0 990 26.5
vmacro17678 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 1.3e-72 279.6 523 40.9
MD06G1210800 Malus domestica HOM05D004216 ORTHO05D004926 1.4e-71 276.2 228 62.3
Rhsim08G0137900 Rhododendron simsii HOM05D004216 ORTHO05D004926 9.4e-68 263.5 583 41.3
Haze_18609 Corylus avellana HOM05D004216 ORTHO05D004926 1.6e-67 262.7 208 60.6
Gohir.D07G042780 Gossypium hirsutum HOM05D004216 ORTHO05D004926 8.8e-66 256.9 173 67.6
Cre13.g583500 Chlamydomonas reinhardtii HOM05D004216 ORTHO05D004926 3.1e-63 248.4 724 26.1
PRCOL_00003918 Prasinoderma coloniale HOM05D004216 ORTHO05D004926 2.1e-59 235.7 865 25.0
Cpa.g.sc13.56 Carica papaya HOM05D004216 ORTHO05D004926 2.3e-53 215.7 145 66.9
Cpa.g.sc1020.2 Carica papaya HOM05D004216 ORTHO05D004926 4.3e-52 211.5 154 70.1
Gohir.D07G042860 Gossypium hirsutum HOM05D004216 ORTHO05D004926 1.1e-47 196.8 174 63.2
arahy.Tifrunner.gnm1.ann1.1HJL67 Arachis hypogaea HOM05D004216 ORTHO05D004926 1.8e-42 179.5 139 62.6
Medtr1091s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 1.9e-39 169.5 115 68.7
Cpa.g.sc13.54 Carica papaya HOM05D004216 ORTHO05D004926 3.2e-39 168.7 104 78.8
Medtr7g029065 Medicago truncatula HOM05D004216 ORTHO05D004926 9.2e-39 167.2 457 37.4
PGSC0003DMG400005622 Solanum tuberosum HOM05D004216 ORTHO05D004926 3.5e-38 165.2 501 34.5
SHI18928 Sapria himalayana HOM05D004216 ORTHO05D004926 1.8e-34 152.9 139 54.0
Actinidia39807 Actinidia chinensis HOM05D004216 ORTHO05D004926 2.3e-34 152.5 232 39.2
Duzib084G0462 Durio zibethinus HOM05D004216 ORTHO05D004926 1.3e-32 146.7 156 54.5
Haze_18607 Corylus avellana HOM05D004216 ORTHO05D004926 3.7e-32 145.2 137 51.1
MCO16G579 Micromonas commoda HOM05D004216 ORTHO05D004926 3.0e-29 135.6 687 22.9
Lj9A432T73 Lonicera japonica HOM05D004216 ORTHO05D004926 1.4e-26 126.7 81 72.8
Zm00001eb099360 Zea mays HOM05D004216 ORTHO05D004926 3.1e-26 125.6 105 57.1
SHI18930 Sapria himalayana HOM05D004216 ORTHO05D004926 1.5e-25 123.2 111 55.0
arahy.Tifrunner.gnm1.ann1.269HHI Arachis hypogaea HOM05D004216 ORTHO05D004926 1.3e-24 120.2 122 55.7
Medtr0268s0020 Medicago truncatula HOM05D004216 ORTHO05D004926 4.9e-24 118.2 72 68.1
TAR629G2837 Trochodendron aralioides HOM05D004216 ORTHO05D004926 8.4e-24 117.5 117 50.4
SHI18921 Sapria himalayana HOM05D004216 ORTHO05D004926 5.4e-23 114.8 121 53.7
Lj6g0001849 Lotus japonicus HOM05D004216 ORTHO05D004926 4.6e-22 111.7 81 63.0
SalBow8G1216 Salvia bowleyana HOM05D004216 ORTHO05D004926 5.1e-21 108.2 79 68.4
arahy.Tifrunner.gnm1.ann1.FN32SY Arachis hypogaea HOM05D004216 ORTHO05D004926 3.3e-20 105.5 75 66.7
Os09g0409950 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 1.8e-18 99.8 138 43.5
arahy.Tifrunner.gnm1.ann1.CPL525 Arachis hypogaea HOM05D004216 ORTHO05D004926 4.0e-18 98.6 119 48.7
Lsat_1_v5_gn_3_22081 Lactuca sativa HOM05D001700 ORTHO05D013746 4.0e-18 98.6 69 66.7
SHI18919 Sapria himalayana HOM05D004216 ORTHO05D004926 1.2e-17 97.1 202 41.1
arahy.Tifrunner.gnm1.ann1.1842CP Arachis hypogaea HOM05D004216 ORTHO05D004926 2.0e-17 96.3 148 41.9
Lsat_1_v5_gn_4_30120 Lactuca sativa HOM05D004216 ORTHO05D004926 1.3e-16 93.6 119 43.7
SHI18924 Sapria himalayana HOM05D004216 ORTHO05D004926 2.4e-15 89.4 62 67.7
MD14G1221500 Malus domestica HOM05D004216 ORTHO05D004926 1.0e-13 84.0 69 60.9
MD14G1221600 Malus domestica HOM05D004216 ORTHO05D004926 3.3e-12 79.0 157 38.9
Lsat_1_v5_gn_4_156821 Lactuca sativa HOM05D001700 ORTHO05D013746 2.8e-11 75.9 113 38.9
SHI18929 Sapria himalayana HOM05D004216 ORTHO05D004926 3.6e-11 75.5 54 53.7
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 1.4e-10 73.6 66 56.1
SHI18925 Sapria himalayana HOM05D000023 ORTHO05D000014 9.0e-10 70.9 87 49.4
SHI18927 Sapria himalayana HOM05D004216 ORTHO05D004926 2.6e-09 69.3 36 80.6
TWI60G0758 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 2.2e-08 66.2 48 68.8
Thhalv10002734m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 2.9e-08 65.9 44 75.0
Medtr4g113495 Medicago truncatula HOM05D004216 ORTHO05D004926 4.9e-08 65.1 104 37.5
Medtr4g113360 Medicago truncatula HOM05D004216 ORTHO05D004926 2.4e-07 62.8 95 41.1
SalBow4G2233 Salvia bowleyana HOM05D002132 ORTHO05D002168 1.6e-06 60.1 354 21.5
Os09g0362500 Oryza sativa ssp. japonica HOM05D002132 ORTHO05D002168 2.1e-06 59.7 350 20.3
Hund19433 Selenicereus undatus HOM05D002132 ORTHO05D002168 2.1e-06 59.7 222 23.9
arahy.Tifrunner.gnm1.ann1.9R3CPH Arachis hypogaea HOM05D004216 ORTHO05D004926 2.7e-06 59.3 73 38.4
Pp3c19_6990 Physcomitrium patens HOM05D002132 ORTHO05D002168 3.5e-06 58.9 353 20.7


User provided reference genes

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