Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G67960 Arabidopsis thaliana HOM05D003836 ORTHO05D004556 0.0e+00 1193.3 625 100.0
AL2G26960 Arabidopsis lyrata HOM05D003836 ORTHO05D004556 0.0e+00 1142.1 625 96.0
Carub.0002s1445 Capsella rubella HOM05D003836 ORTHO05D004556 0.0e+00 1085.1 629 89.8
CARHR060610 Cardamine hirsuta HOM05D003836 ORTHO05D004556 2.8e-298 1028.1 636 85.4
Sp5g22940 Schrenkiella parvula HOM05D003836 ORTHO05D004556 4.5e-288 994.2 642 82.9
Thhalv10018303m.g Eutrema salsugineum HOM05D003836 ORTHO05D004556 1.8e-276 955.7 633 79.9
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 9.6e-254 880.2 629 77.7
Aa31sc536G20 Aethionema arabicum HOM05D003836 ORTHO05D004556 8.1e-245 850.5 672 71.1
BcaB03g15387 Brassica carinata HOM05D003836 ORTHO05D004556 1.4e-241 839.7 638 74.5
BcaC08g46221 Brassica carinata HOM05D003836 ORTHO05D004556 3.3e-222 775.4 631 71.2
BolC6t39223H Brassica oleracea HOM05D003836 ORTHO05D004556 1.1e-214 750.4 586 72.7
Manes.15G136900 Manihot esculenta HOM05D003836 ORTHO05D004556 3.2e-193 679.1 633 60.3
Gorai.013G030000 Gossypium raimondii HOM05D003836 ORTHO05D004556 2.0e-190 669.8 632 59.5
Manes.17G086000 Manihot esculenta HOM05D003836 ORTHO05D004556 2.6e-190 669.5 628 59.9
Cfa015051 Carpinus fangiana HOM05D003836 ORTHO05D004556 3.7e-189 665.6 662 55.9
Gorai.008G170400 Gossypium raimondii HOM05D003836 ORTHO05D004556 2.4e-188 662.9 625 60.0
BcaB03g15147 Brassica carinata HOM05D003836 ORTHO05D004556 1.0e-186 657.5 592 64.5
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 1.3e-186 657.1 628 58.8
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 2.9e-186 656.0 663 56.0
TAR374G0617 Trochodendron aralioides HOM05D003836 ORTHO05D004556 3.8e-186 655.6 648 56.8
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 1.1e-185 654.1 586 66.2
TWI74G0623 Tripterygium wilfordii HOM05D003836 ORTHO05D004556 1.1e-185 654.1 631 58.5
FvH4_4g33240 Fragaria vesca HOM05D003836 ORTHO05D004556 7.2e-185 651.4 635 56.2
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 3.6e-184 649.0 644 56.7
Atru.chr7.2694 Acer truncatum HOM05D003836 ORTHO05D004556 2.3e-183 646.4 629 58.7
Gohir.A13G027900 Gossypium hirsutum HOM05D003836 ORTHO05D004556 6.8e-183 644.8 509 66.8
Potri.010G103400 Populus trichocarpa HOM05D003836 ORTHO05D004556 5.7e-182 641.7 637 57.5
QL03p038287 Quercus lobata HOM05D003836 ORTHO05D004556 2.2e-181 639.8 690 53.5
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 2.8e-181 639.4 664 55.6
Aqoxy6G01037 Aquilegia oxysepala HOM05D003836 ORTHO05D004556 3.7e-181 639.0 496 66.3
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 3.7e-181 639.0 645 55.0
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 4.8e-181 638.6 657 53.9
Lj1g0024673 Lotus japonicus HOM05D003836 ORTHO05D004556 4.8e-181 638.6 501 65.7
TAR622G1236 Trochodendron aralioides HOM05D003836 ORTHO05D004556 2.4e-180 636.3 656 54.7
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 1.6e-179 633.6 630 56.2
TPR.G35600 Trifolium pratense HOM05D003836 ORTHO05D004556 1.6e-179 633.6 658 54.4
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 2.0e-179 633.3 501 64.5
Nn4g24475 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.3e-178 630.6 665 55.2
Gohir.D13G026700 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.7e-178 630.2 555 61.1
FAN22G0514 Fragaria x ananassa HOM05D003836 ORTHO05D004556 2.3e-178 629.8 632 55.4
CsaV3_7G022080 Cucumis sativus L. HOM05D003836 ORTHO05D004556 5.0e-178 628.6 663 55.4
RcHm_v2.0_Chr4g0442391 Rosa chinensis HOM05D003836 ORTHO05D004556 5.0e-178 628.6 633 54.7
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 8.6e-178 627.9 629 55.6
FAN17G2261 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.1e-177 627.5 636 54.9
FAN07G2679 Fragaria x ananassa HOM05D003836 ORTHO05D004556 4.2e-177 625.5 634 54.7
PSO063G7099 Papaver somniferum HOM05D003836 ORTHO05D004556 4.2e-177 625.5 630 54.6
MD16G1015700 Malus domestica HOM05D003836 ORTHO05D004556 1.6e-176 623.6 631 56.9
PSO782G5172 Papaver somniferum HOM05D003836 ORTHO05D004556 1.6e-176 623.6 630 54.1
FAN12G1258 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.4e-175 620.5 638 54.7
Thecc.02G307000 Theobroma cacao HOM05D003836 ORTHO05D004556 5.2e-175 618.6 633 55.8
ClCG11G007570 Citrullus lanatus HOM05D003836 ORTHO05D004556 1.5e-174 617.1 663 54.4
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 2.6e-174 616.3 640 53.9
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 5.7e-174 615.1 626 55.0
Migut.E00502 Erythranthe guttata HOM05D003836 ORTHO05D004556 9.8e-174 614.4 634 55.0
Sed0017171 Sechium edule HOM05D003836 ORTHO05D004556 9.8e-174 614.4 662 55.3
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 6.3e-173 611.7 647 54.4
Haze_10840 Corylus avellana HOM05D003836 ORTHO05D004556 8.3e-173 611.3 664 53.6
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 1.0e-170 604.4 638 54.7
Nn3g18432 Nelumbo nucifera HOM05D003836 ORTHO05D004556 2.9e-170 602.8 657 53.3
Sabra10G0076000 Salix brachista HOM05D003836 ORTHO05D004556 3.0e-167 592.8 646 54.5
Dinv02294 Davidia involucrata HOM05D003836 ORTHO05D004556 2.6e-166 589.7 438 68.5
Duzib251G0897 Durio zibethinus HOM05D003836 ORTHO05D004556 7.5e-166 588.2 626 55.9
Duzib268G0198 Durio zibethinus HOM05D003836 ORTHO05D004556 9.8e-166 587.8 633 54.5
Dinv32673 Davidia involucrata HOM05D003836 ORTHO05D004556 1.3e-165 587.4 654 51.5
Eucgr.G02079 Eucalyptus grandis HOM05D003836 ORTHO05D004556 1.3e-165 587.4 654 53.5
arahy.Tifrunner.gnm1.ann1.THT645 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.4e-164 583.9 667 50.2
Gohir.A12G154400 Gossypium hirsutum HOM05D003836 ORTHO05D004556 4.1e-164 582.4 565 58.8
Cc11_g06410 Coffea canephora HOM05D003836 ORTHO05D004556 3.5e-163 579.3 641 53.0
Hma1.2p1_2859F.1_g329510 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 3.5e-163 579.3 398 72.1
arahy.Tifrunner.gnm1.ann1.HCE13Z Arachis hypogaea HOM05D003836 ORTHO05D004556 7.8e-163 578.2 641 51.0
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 1.0e-162 577.8 613 52.9
arahy.Tifrunner.gnm1.ann1.FHB42U Arachis hypogaea HOM05D003836 ORTHO05D004556 6.6e-162 575.1 656 50.3
MELO3C013236.2 Cucumis melo HOM05D003836 ORTHO05D004556 5.6e-161 572.0 641 52.4
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 7.3e-161 571.6 397 72.8
Cpa.g.sc2.157 Carica papaya HOM05D003836 ORTHO05D004556 1.2e-160 570.9 582 57.0
Gohir.D12G157600 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.6e-160 570.5 565 58.4
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 2.0e-158 563.5 565 57.5
ECA246G1487 Erigeron canadensis HOM05D003836 ORTHO05D004556 4.9e-157 558.9 424 67.0
Lsat_1_v5_gn_3_104360 Lactuca sativa HOM05D003836 ORTHO05D004556 4.9e-157 558.9 632 51.9
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 7.8e-155 551.6 504 59.1
EL10Ac8g19453 Beta vulgaris HOM05D003836 ORTHO05D004556 1.6e-152 543.9 679 49.0
Ah.02g131240 Amaranthus hybridus HOM05D003836 ORTHO05D004556 8.1e-152 541.6 420 66.2
ATR0021G013 Amborella trichopoda HOM05D003836 ORTHO05D004556 2.6e-150 536.6 648 49.5
DCAR_023556 Daucus carota HOM05D003836 ORTHO05D004556 1.4e-148 530.8 641 47.7
SalBow2G2298 Salvia bowleyana HOM05D003836 ORTHO05D004556 6.0e-147 525.4 654 47.6
Zm00001eb216180 Zea mays HOM05D003836 ORTHO05D004556 1.2e-144 517.7 614 47.4
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 7.6e-142 508.4 399 63.7
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 3.2e-140 503.1 491 56.0
SGA_v2.0_scaffold23G10153 Striga asiatica HOM05D003836 ORTHO05D004556 4.0e-135 486.1 609 48.8
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 1.9e-132 477.2 477 54.1
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 9.3e-132 474.9 365 66.3
unitig_8.g4015 Utricularia gibba HOM05D003836 ORTHO05D004556 1.6e-131 474.2 639 44.6
arahy.Tifrunner.gnm1.ann1.36Q8NS Arachis hypogaea HOM05D003836 ORTHO05D004556 5.8e-126 455.7 636 43.7
Pp3c12_1050 Physcomitrium patens HOM05D003836 ORTHO05D004556 7.9e-123 445.3 431 52.4
arahy.Tifrunner.gnm1.ann1.6NWB5V Arachis hypogaea HOM05D003836 ORTHO05D004556 1.5e-121 441.0 506 51.4
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 6.2e-120 435.6 431 55.5
Lj6A734G74 Lonicera japonica HOM05D003836 ORTHO05D004556 7.6e-118 428.7 627 42.4
Os03g0715400 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 1.4e-116 424.5 406 56.4
Medtr4g090465 Medicago truncatula HOM05D003836 ORTHO05D004556 3.0e-114 416.8 372 57.8
Mapoly0019s0007 Marchantia polymorpha HOM05D003836 ORTHO05D004556 5.6e-113 412.5 505 44.8
Solyc06g051440.4 Solanum lycopersicum HOM05D003836 ORTHO05D004556 1.8e-106 391.0 291 67.7
SHI04351 Sapria himalayana HOM05D003836 ORTHO05D004556 9.0e-103 378.6 353 58.4
Nitab4.5_0001516g0010 Nicotiana tabacum HOM05D003836 ORTHO05D004556 2.9e-101 373.6 769 36.4
arahy.Tifrunner.gnm1.ann1.0AB4R7 Arachis hypogaea HOM05D003836 ORTHO05D004556 9.4e-100 368.6 506 47.2
Lalb_Chr23g0273371 Lupinus albus HOM05D003836 ORTHO05D004556 1.2e-99 368.2 472 47.2
AUR62033051 Chenopodium quinoa HOM05D003836 ORTHO05D004556 6.7e-98 362.5 557 44.7
Oeu036124.4 Olea europaea HOM05D003836 ORTHO05D004556 3.2e-92 343.6 275 64.4
AagrBONN_evm.TU.Sc2ySwM_228.1822 Anthoceros agrestis HOM05D003836 ORTHO05D004556 2.6e-86 323.9 339 48.1
MD13G1017500 Malus domestica HOM05D003836 ORTHO05D004556 1.8e-82 311.2 426 45.5
C01p04020 Brassica napus HOM05D003836 ORTHO05D004556 6.7e-82 309.3 172 88.4
Sc10g0004880 Simmondsia chinensis HOM05D003836 ORTHO05D004556 4.8e-80 303.1 198 73.7
SMO358G0292 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 1.4e-79 301.6 411 42.3
BcaC08g46015 Brassica carinata HOM05D003836 ORTHO05D004556 6.5e-77 292.7 188 83.0
Nitab4.5_0001227g0030 Nicotiana tabacum HOM05D003836 ORTHO05D004556 3.7e-72 276.9 642 34.3
Peaxi162Scf00825g00424 Petunia axillaris HOM05D003836 ORTHO05D004556 7.2e-68 262.7 410 44.1
Sopen06g017410 Solanum pennellii HOM05D003836 ORTHO05D004556 9.4e-68 262.3 420 42.1
HanXRQChr15g0473551 Helianthus annuus HOM05D003836 ORTHO05D004556 4.0e-66 256.9 226 58.4
MBI11_g36366_MAGBIO Magnolia biondii HOM05D003836 ORTHO05D004556 3.7e-64 250.4 423 39.7
Sc10g0004870 Simmondsia chinensis HOM05D003836 ORTHO05D004556 4.8e-64 250.0 421 40.9
Lalb_Chr23g0273381 Lupinus albus HOM05D003836 ORTHO05D004556 6.3e-64 249.6 170 70.0
CSS0006660 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 8.3e-64 249.2 167 71.3
AUR62042201 Chenopodium quinoa HOM05D003836 ORTHO05D004556 1.8e-63 248.1 571 35.6
HanXRQChr15g0473541 Helianthus annuus HOM05D003836 ORTHO05D004556 1.3e-61 241.9 167 70.1
DCAR_030293 Daucus carota HOM05D003836 ORTHO05D004556 1.0e-58 232.3 347 39.5
Peaxi162Scf00825g00423 Petunia axillaris HOM05D003836 ORTHO05D004556 5.7e-57 226.5 165 65.5
Hma1.2p1_1450F.1_g284160 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 3.1e-50 204.1 334 40.7
MD13G1017700 Malus domestica HOM05D003836 ORTHO05D004556 5.2e-50 203.4 125 76.8
PRCOL_00001721 Prasinoderma coloniale HOM05D003836 ORTHO05D004556 1.9e-47 194.9 412 34.0
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.8e-42 178.3 126 68.3
C06p38100 Brassica napus HOM05D003836 ORTHO05D004556 4.0e-42 177.2 239 47.3
BolC6t38907H Brassica oleracea HOM05D003836 ORTHO05D004556 4.0e-42 177.2 239 47.3
MCO03G489 Micromonas commoda HOM05D003836 ORTHO05D004556 2.2e-40 171.4 384 31.0
Nn8g39028 Nelumbo nucifera HOM05D003836 ORTHO05D004556 3.2e-39 167.5 136 66.2
Hma1.2p1_0658F.1_g197210 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 9.2e-39 166.0 343 36.7
Ca_18504_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 2.7e-38 164.5 178 55.6
Nn6g35439 Nelumbo nucifera HOM05D003836 ORTHO05D004556 2.8e-35 154.5 144 61.1
Nn6g35150 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.1e-34 152.5 119 67.2
arahy.Tifrunner.gnm1.ann1.I9RBIQ Arachis hypogaea HOM05D003836 ORTHO05D004556 4.0e-34 150.6 178 50.6
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 2.2e-32 144.8 126 57.9
CAN.G2032.2 Capsicum annuum HOM05D003836 ORTHO05D004556 5.6e-28 130.2 182 42.3
Cre02.g091000 Chlamydomonas reinhardtii HOM05D003836 ORTHO05D004556 7.3e-28 129.8 319 27.6
HPP92_020596 Vanilla planifolia HOM05D003836 ORTHO05D004556 3.1e-26 124.4 307 32.6
Hund15725 Selenicereus undatus HOM05D003836 ORTHO05D004556 3.2e-23 114.4 261 34.5
arahy.Tifrunner.gnm1.ann1.MA62LX Arachis hypogaea HOM05D003836 ORTHO05D004556 6.0e-22 110.2 86 62.8
Cpa.g.sc2.159 Carica papaya HOM05D003836 ORTHO05D004556 2.3e-21 108.2 70 75.7
Cfa025144 Carpinus fangiana HOM05D003836 ORTHO05D004556 1.1e-20 105.9 285 31.2
RcHm_v2.0_Chr2g0114371 Rosa chinensis HOM05D003836 ORTHO05D004556 1.9e-20 105.1 68 77.9
arahy.Tifrunner.gnm1.ann1.ANFG2H Arachis hypogaea HOM05D003836 ORTHO05D004556 4.3e-20 104.0 93 58.1
TPR.G24606 Trifolium pratense HOM05D003836 ORTHO05D004556 3.6e-19 100.9 70 70.0
Oeu043972.2 Olea europaea HOM05D003836 ORTHO05D004556 1.1e-18 99.4 176 39.2
arahy.Tifrunner.gnm1.ann1.2AK3X2 Arachis hypogaea HOM05D003836 ORTHO05D004556 5.3e-18 97.1 92 55.4
arahy.Tifrunner.gnm1.ann1.62N7D7 Arachis hypogaea HOM05D003836 ORTHO05D004556 5.3e-18 97.1 92 55.4
arahy.Tifrunner.gnm1.ann1.6IM5NS Arachis hypogaea HOM05D003836 ORTHO05D004556 5.3e-18 97.1 92 55.4
arahy.Tifrunner.gnm1.ann1.QY8RSF Arachis hypogaea HOM05D003836 ORTHO05D004556 5.3e-18 97.1 92 55.4
arahy.Tifrunner.gnm1.ann1.XXVP91 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.5e-17 95.5 83 60.2
arahy.Tifrunner.gnm1.ann1.1LH17Q Arachis hypogaea HOM05D003836 ORTHO05D004556 4.4e-17 94.0 83 59.0
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 3.5e-14 84.3 82 57.3
Gorai.010G152700 Gossypium raimondii HOM05D003836 ORTHO05D004556 4.6e-14 84.0 54 74.1
SEGI_35804 Sequoiadendron giganteum HOM05D003836 ORTHO05D004556 1.0e-13 82.8 134 38.8
Nn6g35438 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.9e-12 78.6 51 82.4
SMO278G0031 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 3.3e-12 77.8 147 38.8
SHI04354 Sapria himalayana HOM05D003836 ORTHO05D004556 3.1e-10 71.2 47 61.7
SMO200G0209 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 4.0e-10 70.9 81 45.7
Ca_18505_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 6.9e-10 70.1 47 61.7
arahy.Tifrunner.gnm1.ann1.45U5GW Arachis hypogaea HOM05D003836 ORTHO05D011406 1.2e-09 69.3 52 69.2
arahy.Tifrunner.gnm1.ann1.UYUS3H Arachis hypogaea HOM05D003836 ORTHO05D019773 2.0e-09 68.6 52 69.2
arahy.Tifrunner.gnm1.ann1.X5KGN6 Arachis hypogaea HOM05D003836 ORTHO05D004556 2.9e-08 64.7 123 35.8
RcHm_v2.0_Chr4g0390701 Rosa chinensis HOM05D003836 ORTHO05D004556 3.8e-08 64.3 44 68.2
Zm00001eb237940 Zea mays HOM05D003836 ORTHO05D004556 4.9e-08 63.9 44 54.5
Zm00001eb410650 Zea mays HOM05D003836 ORTHO05D004556 4.9e-08 63.9 44 54.5
Zm00001eb175210 Zea mays HOM05D003836 ORTHO05D004556 1.4e-07 62.4 44 52.3
RcHm_v2.0_Chr6g0287871 Rosa chinensis HOM05D003836 ORTHO05D004556 2.1e-06 58.5 39 74.4
arahy.Tifrunner.gnm1.ann1.70DEUR Arachis hypogaea HOM05D000602 ORTHO05D004556 3.5e-06 57.8 36 66.7
arahy.Tifrunner.gnm1.ann1.JZ224H Arachis hypogaea HOM05D022818 ORTHO05D000304 7.9e-06 56.6 40 70.0


User provided reference genes

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