Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G63680 Arabidopsis thaliana HOM05D005554 ORTHO05D007823 0.0e+00 1468.8 773 100.0
AL2G11550 Arabidopsis lyrata HOM05D005554 ORTHO05D007823 0.0e+00 1417.9 773 96.9
Carub.0002s0117 Capsella rubella HOM05D005554 ORTHO05D007823 0.0e+00 1405.6 773 95.7
Sp2g00970 Schrenkiella parvula HOM05D005554 ORTHO05D007823 0.0e+00 1365.1 777 93.1
Thhalv10023292m.g Eutrema salsugineum HOM05D005554 ORTHO05D007823 0.0e+00 1363.6 777 93.2
CARHR047660 Cardamine hirsuta HOM05D005554 ORTHO05D007823 0.0e+00 1356.7 773 92.9
BcaB07g31556 Brassica carinata HOM05D005554 ORTHO05D007823 0.0e+00 1333.5 776 90.5
BcaC04g22690 Brassica carinata HOM05D005554 ORTHO05D007823 0.0e+00 1320.8 775 91.4
BraA09t37033Z Brassica rapa HOM05D005554 ORTHO05D007823 0.0e+00 1319.3 768 91.3
A09p13810 Brassica napus HOM05D005554 ORTHO05D007823 0.0e+00 1318.9 768 91.1
BolC9t54561H Brassica oleracea HOM05D005554 ORTHO05D007823 0.0e+00 1313.5 769 91.4
C09p16520 Brassica napus HOM05D005554 ORTHO05D007823 0.0e+00 1309.3 769 91.3
Aa31LG2G890 Aethionema arabicum HOM05D005554 ORTHO05D007823 0.0e+00 1265.4 779 87.3
THA.LOC104823588 Tarenaya hassleriana HOM05D005554 ORTHO05D007823 0.0e+00 1224.9 788 80.6
Gohir.D12G231000 Gossypium hirsutum HOM05D005554 ORTHO05D007823 1.1e-311 1072.8 783 73.3
CiPaw.12G092300 Carya illinoinensis HOM05D005554 ORTHO05D007823 1.4e-310 1069.3 781 74.0
Gorai.008G247200 Gossypium raimondii HOM05D005554 ORTHO05D007823 8.9e-310 1066.6 783 73.3
Cpa.g.sc74.56 Carica papaya HOM05D005554 ORTHO05D007823 1.5e-309 1065.8 783 74.1
Dinv38934 Davidia involucrata HOM05D005554 ORTHO05D007823 1.5e-309 1065.8 787 70.8
Prupe.5G101100 Prunus persica HOM05D005554 ORTHO05D007823 1.7e-308 1062.4 783 71.8
Gohir.A12G229900 Gossypium hirsutum HOM05D005554 ORTHO05D007823 4.9e-308 1060.8 783 72.8
PGSC0003DMG402012338 Solanum tuberosum HOM05D005554 ORTHO05D007823 1.1e-307 1059.7 783 72.2
Duzib205G0518 Durio zibethinus HOM05D005554 ORTHO05D007823 1.4e-307 1059.3 785 72.4
Peaxi162Scf00119g01015 Petunia axillaris HOM05D005554 ORTHO05D007823 4.1e-307 1057.7 739 72.9
CsaV3_5G002730 Cucumis sativus L. HOM05D005554 ORTHO05D007823 5.4e-307 1057.4 789 72.4
PGR031G2745 Punica granatum HOM05D005554 ORTHO05D007823 9.2e-307 1056.6 754 72.7
Nn6g33413 Nelumbo nucifera HOM05D005554 ORTHO05D007823 1.6e-306 1055.8 781 70.8
TAR375G0921 Trochodendron aralioides HOM05D005554 ORTHO05D007823 1.6e-306 1055.8 792 70.1
Oeu064085.1 Olea europaea HOM05D005554 ORTHO05D007823 2.7e-306 1055.0 755 72.5
MD06G1085100 Malus domestica HOM05D005554 ORTHO05D007823 4.6e-306 1054.3 789 71.4
Thecc.03G279900 Theobroma cacao HOM05D005554 ORTHO05D007823 1.0e-305 1053.1 785 71.0
Sopen08g029470 Solanum pennellii HOM05D005554 ORTHO05D007823 2.3e-305 1052.0 786 71.6
FAN04G0002 Fragaria x ananassa HOM05D005554 ORTHO05D007823 6.6e-305 1050.4 781 71.4
Solyc08g081170.4 Solanum lycopersicum HOM05D005554 ORTHO05D007823 8.6e-305 1050.0 786 71.5
Ciclev10018956m.g Citrus clementina HOM05D005554 ORTHO05D007823 2.5e-304 1048.5 741 73.3
Cc08_g14820 Coffea canephora HOM05D005554 ORTHO05D007823 7.3e-304 1047.0 739 71.7
FAN08G3292 Fragaria x ananassa HOM05D005554 ORTHO05D007823 9.5e-304 1046.6 779 71.9
Migut.E01089 Erythranthe guttata HOM05D005554 ORTHO05D007823 1.2e-303 1046.2 770 70.9
QL12p032791 Quercus lobata HOM05D005554 ORTHO05D007823 1.2e-303 1046.2 790 70.9
CANSAT21G2493 Cannabis sativa HOM05D005554 ORTHO05D007823 1.6e-303 1045.8 789 71.5
CSS0044545 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 2.1e-303 1045.4 785 69.8
FAN18G3000 Fragaria x ananassa HOM05D005554 ORTHO05D007823 2.1e-303 1045.4 781 71.1
Sc01g0009640 Simmondsia chinensis HOM05D005554 ORTHO05D007823 2.8e-303 1045.0 754 74.8
TWI15G0555 Tripterygium wilfordii HOM05D005554 ORTHO05D007823 3.6e-303 1044.6 787 70.5
Atru.chr9.2175 Acer truncatum HOM05D005554 ORTHO05D007823 4.7e-303 1044.3 773 70.8
Ah.10g034840 Amaranthus hybridus HOM05D005554 ORTHO05D007823 8.1e-303 1043.5 780 70.5
RcHm_v2.0_Chr7g0197491 Rosa chinensis HOM05D005554 ORTHO05D007823 1.4e-302 1042.7 742 73.7
COL.COLO4_34475 Corchorus olitorius HOM05D005554 ORTHO05D007823 3.1e-302 1041.6 720 74.9
FAN13G2706 Fragaria x ananassa HOM05D005554 ORTHO05D007823 3.1e-302 1041.6 775 71.5
PSO782G1990 Papaver somniferum HOM05D005554 ORTHO05D007823 6.8e-302 1040.4 769 70.4
PSO478G3044 Papaver somniferum HOM05D005554 ORTHO05D007823 8.9e-302 1040.0 767 70.5
MELO3C005683.2 Cucumis melo HOM05D005554 ORTHO05D007823 2.0e-301 1038.9 773 73.2
Eucgr.D01840 Eucalyptus grandis HOM05D005554 ORTHO05D007823 3.4e-301 1038.1 737 73.0
Nitab4.5_0001615g0110 Nicotiana tabacum HOM05D005554 ORTHO05D007823 4.4e-301 1037.7 789 68.2
Aqoxy7G00299 Aquilegia oxysepala HOM05D005554 ORTHO05D007823 7.6e-301 1036.9 753 71.0
EL10Ac6g14928 Beta vulgaris HOM05D005554 ORTHO05D007823 3.8e-300 1034.6 784 71.9
AUR62003173 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.9e-299 1032.3 742 72.1
MSTRG.13839 Avicennia marina HOM05D005554 ORTHO05D007823 1.6e-298 1029.2 780 69.4
SalBow1G4020 Salvia bowleyana HOM05D005554 ORTHO05D007823 7.8e-298 1026.9 776 68.8
Lalb_Chr05g0224711 Lupinus albus HOM05D005554 ORTHO05D007823 1.3e-297 1026.2 784 69.5
Manes.02G019800 Manihot esculenta HOM05D005554 ORTHO05D007823 1.3e-297 1026.2 791 70.3
DCAR_000617 Daucus carota HOM05D005554 ORTHO05D007823 5.1e-297 1024.2 781 68.8
CAN.G774.53 Capsicum annuum HOM05D005554 ORTHO05D007823 1.2e-295 1019.6 712 75.3
Lj2C185T6 Lonicera japonica HOM05D005554 ORTHO05D007823 2.8e-295 1018.5 775 68.8
arahy.Tifrunner.gnm1.ann1.C4WXPV Arachis hypogaea HOM05D005554 ORTHO05D007823 3.6e-295 1018.1 775 72.0
Hma1.2p1_0377F.1_g139310 Hydrangea macrophylla HOM05D005554 ORTHO05D007823 6.2e-295 1017.3 728 72.1
Nitab4.5_0010813g0010 Nicotiana tabacum HOM05D005554 ORTHO05D007823 3.1e-294 1015.0 827 66.6
arahy.Tifrunner.gnm1.ann1.CVD0A8 Arachis hypogaea HOM05D005554 ORTHO05D007823 6.9e-294 1013.8 775 71.7
Hund14815 Selenicereus undatus HOM05D005554 ORTHO05D007823 2.9e-292 1008.4 783 67.8
Potri.001G103300 Populus trichocarpa HOM05D005554 ORTHO05D007823 4.9e-292 1007.7 785 68.3
Actinidia14567 Actinidia chinensis HOM05D005554 ORTHO05D007823 7.1e-291 1003.8 705 72.3
Glyma.05G208600 Glycine max HOM05D005554 ORTHO05D007823 6.0e-290 1000.7 775 69.7
Glyma.05G208921 Glycine max HOM05D005554 ORTHO05D007823 6.0e-290 1000.7 775 69.7
Ca_17525_v3 Cicer arietinum L. HOM05D005554 ORTHO05D007823 7.8e-290 1000.3 764 69.4
Glyma.08G015200 Glycine max HOM05D005554 ORTHO05D007823 1.0e-289 1000.0 791 68.6
Psat7g032760 Pisum sativum HOM05D005554 ORTHO05D007823 1.3e-289 999.6 756 70.1
Phvul.002G290300 Phaseolus vulgaris HOM05D005554 ORTHO05D007823 6.6e-289 997.3 751 70.6
Lj4g0004686 Lotus japonicus HOM05D005554 ORTHO05D007823 1.5e-288 996.1 777 68.3
VMungo0251G0638 Vigna mungo HOM05D005554 ORTHO05D007823 7.3e-288 993.8 793 68.2
TPR.G12960 Trifolium pratense HOM05D005554 ORTHO05D007823 6.2e-287 990.7 731 72.0
Medtr8g098345 Medicago truncatula HOM05D005554 ORTHO05D007823 1.1e-283 979.9 779 68.2
unitig_26.g9706 Utricularia gibba HOM05D005554 ORTHO05D007823 1.4e-283 979.5 772 66.7
Sabra01G0078000 Salix brachista HOM05D005554 ORTHO05D007823 2.7e-282 975.3 821 65.2
ClCG01G002630 Citrullus lanatus HOM05D005554 ORTHO05D007823 4.8e-279 964.5 728 70.1
AUR62007990 Chenopodium quinoa HOM05D005554 ORTHO05D007823 1.1e-278 963.4 709 71.5
Haze_08788 Corylus avellana HOM05D005554 ORTHO05D007823 7.1e-275 950.7 784 69.1
ECA246G2370 Erigeron canadensis HOM05D005554 ORTHO05D007823 2.7e-274 948.7 734 69.1
Lsat_1_v5_gn_3_6620 Lactuca sativa HOM05D005554 ORTHO05D007823 6.0e-274 947.6 758 66.6
ATR0680G162 Amborella trichopoda HOM05D005554 ORTHO05D007823 1.0e-273 946.8 743 65.4
CDE05G1777 Ceratophyllum demersum HOM05D005554 ORTHO05D007823 1.6e-271 939.5 786 63.9
FvH4_5g02610 Fragaria vesca HOM05D005554 ORTHO05D007823 1.6e-271 939.5 727 69.5
HanXRQChr06g0165871 Helianthus annuus HOM05D005554 ORTHO05D007823 4.8e-271 937.9 783 65.0
MBI18_g45367_MAGBIO Magnolia biondii HOM05D005554 ORTHO05D007823 1.1e-270 936.8 661 72.9
Sed0016596 Sechium edule HOM05D005554 ORTHO05D007823 5.3e-270 934.5 720 69.2
vmacro11364 Vaccinium macrocarpon HOM05D005554 ORTHO05D007823 7.6e-269 930.6 798 62.5
SGA_v2.0_scaffold144G35937 Striga asiatica HOM05D005554 ORTHO05D007823 2.7e-258 895.6 751 64.3
Cfa012222 Carpinus fangiana HOM05D005554 ORTHO05D007823 1.1e-227 793.9 642 71.3
Gohir.A03G016800 Gossypium hirsutum HOM05D005554 ORTHO05D007823 2.8e-223 779.2 552 70.5
Gorai.003G158300 Gossypium raimondii HOM05D005554 ORTHO05D007823 4.8e-223 778.5 534 71.9
AagrBONN_evm.TU.Sc2ySwM_228.1600 Anthoceros agrestis HOM05D005554 ORTHO05D007823 5.4e-222 775.0 736 56.4
Os10g0548900 Oryza sativa ssp. japonica HOM05D005554 ORTHO05D007823 7.0e-222 774.6 720 57.4
Mapoly0091s0082 Marchantia polymorpha HOM05D005554 ORTHO05D007823 9.1e-222 774.2 750 58.1
Zm00001eb391750 Zea mays HOM05D005554 ORTHO05D007823 6.3e-215 751.5 718 56.8
Pp3c24_18820 Physcomitrium patens HOM05D005554 ORTHO05D007823 1.8e-214 750.0 762 52.8
HPP92_014728 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.9e-206 723.4 543 64.5
SMO147G0132 Selaginella moellendorffii HOM05D005554 ORTHO05D007823 2.0e-200 703.4 533 63.4
CBR_g32224 Chara braunii HOM05D005554 ORTHO05D007823 1.8e-193 680.2 530 63.0
Pp3c23_15810 Physcomitrium patens HOM05D005554 ORTHO05D007823 3.3e-179 632.9 520 60.4
Gohir.D03G151100 Gossypium hirsutum HOM05D005554 ORTHO05D007823 4.9e-175 619.0 416 72.4
GSVIVG01019746001 Vitis vinifera HOM05D005554 ORTHO05D007823 6.7e-164 582.0 405 72.3
HPP92_020853 Vanilla planifolia HOM05D005554 ORTHO05D007823 1.5e-155 554.3 416 64.4
Lj2C0T8 Lonicera japonica HOM05D005554 ORTHO05D007823 1.2e-141 508.1 343 74.1
HPP92_008494 Vanilla planifolia HOM05D005554 ORTHO05D007823 5.3e-129 466.1 269 82.9
CAN.G20.10 Capsicum annuum HOM05D005554 ORTHO05D007823 5.8e-91 339.7 280 62.9
MCO12G378 Micromonas commoda HOM05D005554 ORTHO05D007823 7.5e-91 339.3 493 41.4
PRCOL_00002248 Prasinoderma coloniale HOM05D005554 ORTHO05D007823 1.6e-88 331.6 684 33.3
HPP92_008493 Vanilla planifolia HOM05D005554 ORTHO05D007823 9.5e-86 322.4 265 60.8
Oeu007749.1 Olea europaea HOM05D005554 ORTHO05D007823 2.7e-80 304.3 594 38.2
Lj2C0T9 Lonicera japonica HOM05D005554 ORTHO05D007823 4.9e-66 256.9 288 53.5
Actinidia02000 Actinidia chinensis HOM05D005554 ORTHO05D007823 1.3e-63 248.8 353 44.8
Cre12.g519900 Chlamydomonas reinhardtii HOM05D005554 ORTHO05D007823 3.0e-63 247.7 662 30.5
BcaC06g33105 Brassica carinata HOM05D005554 ORTHO05D021652 1.2e-48 199.1 157 70.1
BcaB04g18522 Brassica carinata HOM05D005554 ORTHO05D021652 1.9e-46 191.8 116 84.5
SEGI_34096 Sequoiadendron giganteum HOM05D005554 ORTHO05D007823 6.7e-39 166.8 99 77.8
CSS0006848 Camellia sinensis var. sinensis HOM05D005554 ORTHO05D007823 7.6e-35 153.3 83 81.9
BcaB06g26524 Brassica carinata HOM05D005554 ORTHO05D021652 8.2e-29 133.3 153 51.6
MD14G1106300 Malus domestica HOM05D005554 ORTHO05D007823 9.7e-22 109.8 54 87.0
MD14G1106100 Malus domestica HOM05D005554 ORTHO05D026402 2.9e-18 98.2 91 59.3
HPP92_008492 Vanilla planifolia HOM05D005554 ORTHO05D026402 1.1e-17 96.3 136 45.6
Sabra03G0091300 Salix brachista HOM05D008679 ORTHO05D010804 2.3e-15 88.6 120 44.2
BcaB07g30213 Brassica carinata HOM05D005554 ORTHO05D021652 2.6e-14 85.1 70 65.7
MD14G1106200 Malus domestica HOM05D005554 ORTHO05D007823 2.9e-10 71.6 41 78.0
Actinidia02001 Actinidia chinensis HOM05D005554 ORTHO05D026402 7.2e-09 67.0 75 52.0
Pp3c5_9920 Physcomitrium patens HOM05D005554 ORTHO05D007823 5.2e-07 60.8 79 41.8
Pp3c3_2590 Physcomitrium patens HOM05D005554 ORTHO05D313840 6.7e-07 60.5 81 42.0


User provided reference genes

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