Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G54760 Arabidopsis thaliana HOM05D000203 ORTHO05D000135 6.4e-85 317.4 162 100.0
AL1G43830 Arabidopsis lyrata HOM05D000203 ORTHO05D000135 1.5e-65 253.1 147 89.1
AT1G29962 Arabidopsis thaliana HOM05D000203 ORTHO05D000135 7.4e-57 224.2 148 79.7
AT1G28460 Arabidopsis thaliana HOM05D000203 ORTHO05D000135 6.5e-53 211.1 145 75.2
AT1G28450 Arabidopsis thaliana HOM05D000203 ORTHO05D000135 2.7e-51 205.7 151 73.5
Carub.0002s0876 Capsella rubella HOM05D000203 ORTHO05D000135 2.0e-38 162.9 143 60.1
Carub.0002s0869 Capsella rubella HOM05D000203 ORTHO05D000135 1.7e-37 159.8 143 58.7
Carub.0002s0868 Capsella rubella HOM05D000203 ORTHO05D000135 2.2e-37 159.5 143 58.7
Carub.0001s2820 Capsella rubella HOM05D000203 ORTHO05D000135 3.8e-37 158.7 146 59.6
Carub.0002s0873 Capsella rubella HOM05D000203 ORTHO05D000135 8.5e-37 157.5 143 58.0
Carub.0002s0875 Capsella rubella HOM05D000203 ORTHO05D000135 1.4e-36 156.8 143 56.6
Carub.0001s3250 Capsella rubella HOM05D000203 ORTHO05D000135 4.2e-36 155.2 135 65.2
Carub.0002s0874 Capsella rubella HOM05D000203 ORTHO05D000135 4.2e-36 155.2 146 56.8
Carub.0002s0871 Capsella rubella HOM05D000203 ORTHO05D000135 9.4e-36 154.1 143 57.3
Carub.0006s2742 Capsella rubella HOM05D000203 ORTHO05D000135 1.6e-35 153.3 144 59.0
Carub.0001s3268 Capsella rubella HOM05D000203 ORTHO05D000135 4.7e-35 151.8 146 60.3
Carub.0001s3327 Capsella rubella HOM05D000203 ORTHO05D000135 7.9e-35 151.0 139 62.6
Carub.0006s2741 Capsella rubella HOM05D000203 ORTHO05D000135 2.6e-33 146.0 146 58.2
CARHR029440 Cardamine hirsuta HOM05D000203 ORTHO05D000135 5.7e-33 144.8 135 57.0
CARHR029460 Cardamine hirsuta HOM05D000203 ORTHO05D000135 9.7e-33 144.1 138 55.1
Carub.0001s3269 Capsella rubella HOM05D000203 ORTHO05D000135 2.4e-31 139.4 146 56.8
AL5G24300 Arabidopsis lyrata HOM05D000203 ORTHO05D000135 1.3e-29 133.7 140 52.9
Thhalv10009431m.g Eutrema salsugineum HOM05D000203 ORTHO05D000135 5.2e-26 121.7 145 49.7
Carub.0002s0872 Capsella rubella HOM05D000203 ORTHO05D000135 1.5e-25 120.2 141 48.2
Sp1g25830 Schrenkiella parvula HOM05D000203 ORTHO05D000135 1.4e-23 113.6 145 46.2
BcaC05g27005 Brassica carinata HOM05D000203 ORTHO05D000135 3.1e-23 112.5 144 48.6
C05p28690 Brassica napus HOM05D000203 ORTHO05D000135 3.1e-23 112.5 144 48.6
BolC5t31589H Brassica oleracea HOM05D000203 ORTHO05D000135 3.1e-23 112.5 144 48.6
BraA09t39177Z Brassica rapa HOM05D000203 ORTHO05D000135 2.7e-22 109.4 145 47.6
Carub.0001s3080 Capsella rubella HOM05D000203 ORTHO05D000135 7.7e-22 107.8 131 47.3
BcaB07g32593 Brassica carinata HOM05D000203 ORTHO05D000135 3.2e-20 102.4 140 45.7
THA.LOC104820706 Tarenaya hassleriana HOM05D000203 ORTHO05D000135 1.0e-18 97.4 148 37.8
BcaB07g32580 Brassica carinata HOM05D000203 ORTHO05D000135 1.5e-17 93.6 141 44.0
BcaB07g32581 Brassica carinata HOM05D000203 ORTHO05D000135 1.5e-17 93.6 141 44.0
BcaB07g32582 Brassica carinata HOM05D000203 ORTHO05D000135 5.7e-17 91.7 141 43.3
A09p36560 Brassica napus HOM05D000203 ORTHO05D000135 2.2e-16 89.7 145 42.8
THA.LOC104820705 Tarenaya hassleriana HOM05D000203 ORTHO05D000135 3.7e-16 89.0 139 36.7
Aa31LG6G5740 Aethionema arabicum HOM05D000203 ORTHO05D000135 8.3e-16 87.8 127 37.8
BcaB07g32583 Brassica carinata HOM05D000203 ORTHO05D000135 8.3e-16 87.8 141 42.6
CiPaw.09G126300 Carya illinoinensis HOM05D000203 ORTHO05D000135 2.2e-13 79.7 130 34.6
Carub.0002s0870 Capsella rubella HOM05D000203 ORTHO05D000135 1.1e-12 77.4 73 57.5
Sc24g0001840 Simmondsia chinensis HOM05D000203 ORTHO05D000135 6.1e-11 71.6 144 31.2
QL05p059069 Quercus lobata HOM05D000203 ORTHO05D000135 1.8e-10 70.1 142 33.1
Eucgr.E02824 Eucalyptus grandis HOM05D000203 ORTHO05D000135 2.3e-10 69.7 127 36.2
Eucgr.E02827 Eucalyptus grandis HOM05D000203 ORTHO05D000135 2.3e-10 69.7 127 36.2
Duzib235G1529 Durio zibethinus HOM05D000203 ORTHO05D000135 6.8e-10 68.2 135 30.4
THA.LOC104814288 Tarenaya hassleriana HOM05D000203 ORTHO05D000135 6.8e-10 68.2 137 34.3
Eucgr.E02829 Eucalyptus grandis HOM05D000203 ORTHO05D000135 8.8e-10 67.8 127 36.2
THA.LOC104820644 Tarenaya hassleriana HOM05D000203 ORTHO05D000135 1.2e-09 67.4 136 33.8
Duzib192G0595 Durio zibethinus HOM05D000203 ORTHO05D000135 2.0e-09 66.6 140 30.7
Cfa000969 Carpinus fangiana HOM05D000203 ORTHO05D000135 3.4e-09 65.9 145 31.7
Prupe.1G087700 Prunus persica HOM05D000203 ORTHO05D000135 3.4e-09 65.9 146 28.8
BcaB07g32587 Brassica carinata HOM05D000203 ORTHO05D000135 4.4e-09 65.5 125 40.0
PGR102G3375 Punica granatum HOM05D000203 ORTHO05D000135 7.5e-09 64.7 137 33.6
RcHm_v2.0_Chr3g0477441 Rosa chinensis HOM05D000203 ORTHO05D000135 1.3e-08 63.9 154 29.9
Sed0027724 Sechium edule HOM05D000203 ORTHO05D000135 1.3e-08 63.9 134 29.1
BcaB07g32578 Brassica carinata HOM05D000203 ORTHO05D000135 1.7e-08 63.5 73 49.3
Eucgr.E02870 Eucalyptus grandis HOM05D000203 ORTHO05D000135 1.7e-08 63.5 128 35.9
FAN14G5732 Fragaria x ananassa HOM05D000203 ORTHO05D000135 1.7e-08 63.5 117 31.6
Ciclev10006957m.g Citrus clementina HOM05D000203 ORTHO05D000135 2.8e-08 62.8 128 33.6
Sed0007340 Sechium edule HOM05D000203 ORTHO05D000135 4.9e-08 62.0 136 30.1
FvH4_6g21070 Fragaria vesca HOM05D000203 ORTHO05D000135 6.3e-08 61.6 112 32.1
Hund24799 Selenicereus undatus HOM05D005723 ORTHO05D005968 6.3e-08 61.6 139 32.4
Thhalv10022229m.g Eutrema salsugineum HOM05D000203 ORTHO05D011201 8.3e-08 61.2 137 32.8
MD05G1287100 Malus domestica HOM05D000203 ORTHO05D000135 8.3e-08 61.2 93 35.5
Thecc.06G153500 Theobroma cacao HOM05D000203 ORTHO05D000135 8.3e-08 61.2 81 37.0
Ciclev10006708m.g Citrus clementina HOM05D000203 ORTHO05D000135 1.1e-07 60.8 129 32.6
Gorai.006G132000 Gossypium raimondii HOM05D000203 ORTHO05D000135 1.1e-07 60.8 122 30.3
Duzib192G0997 Durio zibethinus HOM05D000203 ORTHO05D000135 1.4e-07 60.5 136 32.4
Gohir.D09G114233 Gossypium hirsutum HOM05D000203 ORTHO05D000135 1.4e-07 60.5 121 30.6
Manes.15G119500 Manihot esculenta HOM05D000203 ORTHO05D000135 1.4e-07 60.5 151 28.5
Cfa000970 Carpinus fangiana HOM05D000203 ORTHO05D000135 1.8e-07 60.1 131 30.5
Ciclev10006503m.g Citrus clementina HOM05D000203 ORTHO05D000135 1.8e-07 60.1 129 33.3
Ciclev10007104m.g Citrus clementina HOM05D000203 ORTHO05D000135 1.8e-07 60.1 129 33.3
Gohir.A09G117450 Gossypium hirsutum HOM05D000203 ORTHO05D000135 1.8e-07 60.1 122 30.3
Gohir.D09G114266 Gossypium hirsutum HOM05D000203 ORTHO05D000135 1.8e-07 60.1 122 30.3
Lalb_Chr07g0187161 Lupinus albus HOM05D000203 ORTHO05D000135 1.8e-07 60.1 78 43.6
Prupe.4G077700 Prunus persica HOM05D000203 ORTHO05D000135 1.8e-07 60.1 145 26.2
QL05p059080 Quercus lobata HOM05D000203 ORTHO05D000135 1.8e-07 60.1 140 27.1
ClCG01G024450 Citrullus lanatus HOM05D000203 ORTHO05D000135 2.4e-07 59.7 156 26.9
MD10G1264500 Malus domestica HOM05D000203 ORTHO05D000135 2.4e-07 59.7 93 34.4
PGR031G2827 Punica granatum HOM05D000203 ORTHO05D000135 2.4e-07 59.7 134 31.3
Potri.001G251400 Populus trichocarpa HOM05D000203 ORTHO05D000135 3.1e-07 59.3 131 30.5
Potri.004G130900 Populus trichocarpa HOM05D000203 ORTHO05D000135 3.1e-07 59.3 133 31.6
Thecc.06G153600 Theobroma cacao HOM05D000203 ORTHO05D000135 3.1e-07 59.3 135 27.4
Ciclev10006587m.g Citrus clementina HOM05D000203 ORTHO05D000135 4.1e-07 58.9 138 31.9
Gorai.006G132100 Gossypium raimondii HOM05D000203 ORTHO05D000135 4.1e-07 58.9 122 30.3
Ciclev10007010m.g Citrus clementina HOM05D000203 ORTHO05D000135 7.0e-07 58.2 129 32.6
Duzib160G0196 Durio zibethinus HOM05D000203 ORTHO05D000135 9.2e-07 57.8 79 36.7
Gohir.D05G271250 Gossypium hirsutum HOM05D000203 ORTHO05D000135 9.2e-07 57.8 122 29.5
Gohir.D05G271300 Gossypium hirsutum HOM05D000203 ORTHO05D000135 9.2e-07 57.8 122 30.3
MD10G1264600 Malus domestica HOM05D000203 ORTHO05D000135 9.2e-07 57.8 133 29.3
PGR102G1292 Punica granatum HOM05D000203 ORTHO05D000135 9.2e-07 57.8 146 29.5
QL05p059059 Quercus lobata HOM05D000203 ORTHO05D000135 9.2e-07 57.8 137 32.1
Thhalv10022154m.g Eutrema salsugineum HOM05D000203 ORTHO05D000135 1.2e-06 57.4 123 33.3
Hma1.2p1_0137F.1_g062440 Hydrangea macrophylla HOM05D000203 ORTHO05D000135 1.2e-06 57.4 101 29.7
Potri.009G045900 Populus trichocarpa HOM05D000203 ORTHO05D000135 1.2e-06 57.4 121 30.6
Ciclev10006439m.g Citrus clementina HOM05D000203 ORTHO05D000135 1.6e-06 57.0 129 34.9
Eucgr.E02866 Eucalyptus grandis HOM05D000203 ORTHO05D000135 1.6e-06 57.0 136 28.7
Eucgr.L01236 Eucalyptus grandis HOM05D000203 ORTHO05D000135 1.6e-06 57.0 136 29.4
Hma1.2p1_1051F.1_g252260 Hydrangea macrophylla HOM05D000203 ORTHO05D000135 1.6e-06 57.0 138 27.5
PGR031G1266 Punica granatum HOM05D000203 ORTHO05D000135 1.6e-06 57.0 136 34.6
Ciclev10006022m.g Citrus clementina HOM05D000203 ORTHO05D000135 2.0e-06 56.6 138 31.9
Eucgr.E02872 Eucalyptus grandis HOM05D000203 ORTHO05D000135 2.0e-06 56.6 127 29.9
Gohir.A06G136800 Gossypium hirsutum HOM05D000203 ORTHO05D000135 2.0e-06 56.6 94 38.3
Lalb_Chr13g0294081 Lupinus albus HOM05D000203 ORTHO05D000135 2.0e-06 56.6 76 43.4
Psat3g033440 Pisum sativum HOM05D000203 ORTHO05D000135 2.0e-06 56.6 83 38.6
RcHm_v2.0_Chr5g0013531 Rosa chinensis HOM05D000203 ORTHO05D000135 2.0e-06 56.6 126 30.2
VMungo0251G1515 Vigna mungo HOM05D000203 ORTHO05D000135 2.0e-06 56.6 47 55.3
Aa31LG10G7770 Aethionema arabicum HOM05D000203 ORTHO05D000135 2.7e-06 56.2 89 36.0
Gorai.010G165500 Gossypium raimondii HOM05D000203 ORTHO05D000135 2.7e-06 56.2 94 37.2
Manes.05G208100 Manihot esculenta HOM05D000203 ORTHO05D000135 2.7e-06 56.2 141 31.2
Medtr4g094638 Medicago truncatula HOM05D000203 ORTHO05D000135 2.7e-06 56.2 115 34.8
PGR102G1683 Punica granatum HOM05D000203 ORTHO05D000135 2.7e-06 56.2 141 29.1
CARHR176030 Cardamine hirsuta HOM05D000203 ORTHO05D000135 3.5e-06 55.8 82 37.8
Dinv32276 Davidia involucrata HOM05D000203 ORTHO05D000135 3.5e-06 55.8 118 33.9
Glyma.05G227300 Glycine max HOM05D000203 ORTHO05D000135 3.5e-06 55.8 91 38.5
Gohir.D04G160350 Gossypium hirsutum HOM05D000203 ORTHO05D000135 3.5e-06 55.8 116 29.3
Gorai.012G147900 Gossypium raimondii HOM05D000203 ORTHO05D000135 3.5e-06 55.8 116 29.3
Phvul.002G309400 Phaseolus vulgaris HOM05D000203 ORTHO05D000135 3.5e-06 55.8 84 42.9
Potri.004G131100 Populus trichocarpa HOM05D000203 ORTHO05D000135 3.5e-06 55.8 129 30.2
CARHR078230 Cardamine hirsuta HOM05D000203 ORTHO05D000135 4.5e-06 55.5 139 28.8
Ciclev10006615m.g Citrus clementina HOM05D000203 ORTHO05D000135 4.5e-06 55.5 82 37.8
Duzib160G0930 Durio zibethinus HOM05D000203 ORTHO05D000135 4.5e-06 55.5 135 27.4
Gohir.A04G118660 Gossypium hirsutum HOM05D000203 ORTHO05D000135 4.5e-06 55.5 101 30.7
Gorai.009G284300 Gossypium raimondii HOM05D000203 ORTHO05D000135 4.5e-06 55.5 122 29.5
Lsat_1_v5_gn_2_112180 Lactuca sativa HOM05D000203 ORTHO05D000135 4.5e-06 55.5 121 31.4
Oeu017586.1 Olea europaea HOM05D000203 ORTHO05D000135 4.5e-06 55.5 144 26.4
Ciclev10007015m.g Citrus clementina HOM05D000203 ORTHO05D000135 5.9e-06 55.1 107 36.4
Gohir.A05G269350 Gossypium hirsutum HOM05D000203 ORTHO05D000135 5.9e-06 55.1 109 29.4
Gohir.D04G160375 Gossypium hirsutum HOM05D000203 ORTHO05D000135 5.9e-06 55.1 114 28.1
Prupe.4G077800 Prunus persica HOM05D000203 ORTHO05D000135 5.9e-06 55.1 144 27.8
Sabra09G0033000 Salix brachista HOM05D000203 ORTHO05D000135 5.9e-06 55.1 130 33.1
TWI09G0125 Tripterygium wilfordii HOM05D000203 ORTHO05D000135 5.9e-06 55.1 128 28.9
PSO541G4057 Papaver somniferum HOM05D000203 ORTHO05D000135 7.7e-06 54.7 137 32.8
Potri.009G046100 Populus trichocarpa HOM05D000203 ORTHO05D000135 7.7e-06 54.7 121 30.6
THA.LOC104820688 Tarenaya hassleriana HOM05D000203 ORTHO05D000135 7.7e-06 54.7 144 27.8


User provided reference genes

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