Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G50510 Arabidopsis thaliana HOM05D005156 ORTHO05D006710 2.7e-175 618.6 331 100.0
AL1G58170 Arabidopsis lyrata HOM05D005156 ORTHO05D006710 4.1e-171 604.7 331 97.3
CARHR040540 Cardamine hirsuta HOM05D005156 ORTHO05D006710 1.5e-168 596.3 331 96.1
Carub.0001s3958 Capsella rubella HOM05D005156 ORTHO05D006710 4.2e-168 594.7 330 96.4
BcaC05g27410 Brassica carinata HOM05D005156 ORTHO05D006710 1.2e-165 586.6 328 95.1
Thhalv10011639m.g Eutrema salsugineum HOM05D005156 ORTHO05D006710 1.2e-165 586.6 331 94.3
BcaB02g11155 Brassica carinata HOM05D005156 ORTHO05D006710 5.7e-165 584.3 324 95.7
BcaB07g33488 Brassica carinata HOM05D005156 ORTHO05D006710 5.7e-165 584.3 330 94.2
BcaC08g43222 Brassica carinata HOM05D005156 ORTHO05D006710 4.9e-164 581.3 329 93.6
A05p20090 Brassica napus HOM05D005156 ORTHO05D006710 4.1e-163 578.2 330 94.2
BraA05t20917Z Brassica rapa HOM05D005156 ORTHO05D006710 4.1e-163 578.2 330 94.2
BraA06t23519Z Brassica rapa HOM05D005156 ORTHO05D006710 5.4e-163 577.8 331 93.1
C05p33580 Brassica napus HOM05D005156 ORTHO05D006710 1.6e-162 576.2 330 93.6
Sp1g37360 Schrenkiella parvula HOM05D005156 ORTHO05D006710 1.2e-157 560.1 330 90.9
BolC5t32085H Brassica oleracea HOM05D005156 ORTHO05D006710 5.4e-155 551.2 364 83.5
A06p03060 Brassica napus HOM05D005156 ORTHO05D006710 2.5e-152 542.3 307 93.2
C06p05700 Brassica napus HOM05D005156 ORTHO05D006710 6.2e-151 537.7 306 92.2
THA.LOC104804468 Tarenaya hassleriana HOM05D005156 ORTHO05D006710 1.4e-150 536.6 325 85.8
Aa31LG10G3780 Aethionema arabicum HOM05D005156 ORTHO05D006710 6.4e-140 501.1 295 90.8
Cpa.g.sc84.13 Carica papaya HOM05D005156 ORTHO05D006710 3.1e-134 482.3 326 75.8
CiPaw.13G153000 Carya illinoinensis HOM05D005156 ORTHO05D006710 1.3e-132 476.9 334 74.3
Atru.chr3.2617 Acer truncatum HOM05D005156 ORTHO05D006710 4.9e-132 474.9 329 75.4
RcHm_v2.0_Chr5g0050911 Rosa chinensis HOM05D005156 ORTHO05D006710 4.9e-132 474.9 328 75.6
Thecc.09G243300 Theobroma cacao HOM05D005156 ORTHO05D006710 4.9e-132 474.9 321 76.9
Potri.001G254000 Populus trichocarpa HOM05D005156 ORTHO05D006710 8.4e-132 474.2 329 75.1
Gohir.D07G126000 Gossypium hirsutum HOM05D005156 ORTHO05D006710 7.1e-131 471.1 329 75.4
Gorai.001G136000 Gossypium raimondii HOM05D005156 ORTHO05D006710 9.3e-131 470.7 329 75.4
Ciclev10015838m.g Citrus clementina HOM05D005156 ORTHO05D006710 2.7e-130 469.2 318 76.4
MD11G1196200 Malus domestica HOM05D005156 ORTHO05D006710 2.7e-130 469.2 327 73.7
Hma1.2p1_1115F.1_g258845 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 3.5e-130 468.8 335 74.6
Sc16g0011170 Simmondsia chinensis HOM05D005156 ORTHO05D006710 1.0e-129 467.2 333 73.3
Gohir.A07G121700 Gossypium hirsutum HOM05D005156 ORTHO05D006710 3.0e-129 465.7 329 74.5
Cfa009832 Carpinus fangiana HOM05D005156 ORTHO05D006710 3.9e-129 465.3 333 74.2
FAN16G2156 Fragaria x ananassa HOM05D005156 ORTHO05D006710 2.5e-128 462.6 329 72.6
MSTRG.18451 Avicennia marina HOM05D005156 ORTHO05D006710 4.3e-128 461.8 327 73.1
Oeu001490.1 Olea europaea HOM05D005156 ORTHO05D006710 4.3e-128 461.8 329 75.1
TAR626G1548 Trochodendron aralioides HOM05D005156 ORTHO05D006710 4.3e-128 461.8 330 73.6
CANSAT54G2883 Cannabis sativa HOM05D005156 ORTHO05D006710 7.3e-128 461.1 331 73.1
Actinidia16358 Actinidia chinensis HOM05D005156 ORTHO05D006710 9.6e-128 460.7 334 74.3
Prupe.4G258300 Prunus persica HOM05D005156 ORTHO05D006710 1.3e-127 460.3 328 72.3
QL01p017825 Quercus lobata HOM05D005156 ORTHO05D006710 1.3e-127 460.3 336 73.8
CSS0001612 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 1.6e-127 459.9 328 73.5
CSS0030488 Camellia sinensis var. sinensis HOM05D005156 ORTHO05D006710 2.1e-127 459.5 328 73.2
Migut.D00644 Erythranthe guttata HOM05D005156 ORTHO05D006710 2.1e-127 459.5 327 74.3
Eucgr.J00726 Eucalyptus grandis HOM05D005156 ORTHO05D006710 3.6e-127 458.8 330 71.8
PSO210G1653 Papaver somniferum HOM05D005156 ORTHO05D006710 6.2e-127 458.0 331 73.1
GSVIVG01037376001 Vitis vinifera HOM05D005156 ORTHO05D006710 2.4e-126 456.1 331 73.1
FvH4_3g28170 Fragaria vesca HOM05D005156 ORTHO05D006710 3.1e-126 455.7 331 71.9
Lalb_Chr10g0094741 Lupinus albus HOM05D005156 ORTHO05D006710 6.9e-126 454.5 334 71.3
PGR119G1881 Punica granatum HOM05D005156 ORTHO05D006710 4.4e-125 451.8 328 72.3
Lj3g0017854 Lotus japonicus HOM05D005156 ORTHO05D006710 2.2e-124 449.5 334 71.6
TPR.G34160 Trifolium pratense HOM05D005156 ORTHO05D006710 2.9e-124 449.1 337 71.5
Ah.06g194400 Amaranthus hybridus HOM05D005156 ORTHO05D006710 4.9e-124 448.4 330 71.2
Aqoxy8s002 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 4.9e-124 448.4 327 72.8
PSO210G0499 Papaver somniferum HOM05D005156 ORTHO05D006710 8.4e-124 447.6 331 71.6
CsaV3_1G043140 Cucumis sativus L. HOM05D005156 ORTHO05D006710 2.1e-122 443.0 338 69.5
Phvul.011G080400 Phaseolus vulgaris HOM05D005156 ORTHO05D006710 2.7e-122 442.6 330 70.0
Haze_23195 Corylus avellana HOM05D005156 ORTHO05D006710 3.5e-122 442.2 343 71.4
VMungo1383G1089 Vigna mungo HOM05D005156 ORTHO05D006710 4.6e-122 441.8 336 70.2
PGSC0003DMG400019760 Solanum tuberosum HOM05D005156 ORTHO05D006710 1.3e-121 440.3 300 74.7
Glyma.09G002700 Glycine max HOM05D005156 ORTHO05D006710 1.7e-121 439.9 325 71.4
EL10Ac4g10175 Beta vulgaris HOM05D005156 ORTHO05D006710 8.7e-121 437.6 328 70.1
Nitab4.5_0006419g0030 Nicotiana tabacum HOM05D005156 ORTHO05D006710 8.7e-121 437.6 341 68.9
Cc01_g05890 Coffea canephora HOM05D005156 ORTHO05D006710 1.1e-120 437.2 311 73.3
ECA238G2265 Erigeron canadensis HOM05D005156 ORTHO05D006710 9.6e-120 434.1 333 67.9
CAN.G1323.2 Capsicum annuum HOM05D005156 ORTHO05D006710 2.8e-119 432.6 332 68.7
Solyc11g033260.2 Solanum lycopersicum HOM05D005156 ORTHO05D006710 2.8e-119 432.6 334 68.9
unitig_90.g27461 Utricularia gibba HOM05D005156 ORTHO05D006710 2.8e-119 432.6 329 71.1
Sopen11g015730 Solanum pennellii HOM05D005156 ORTHO05D006710 3.6e-119 432.2 336 68.5
AUR62000172 Chenopodium quinoa HOM05D005156 ORTHO05D006710 8.1e-119 431.0 332 69.0
Peaxi162Scf00473g00218 Petunia axillaris HOM05D005156 ORTHO05D006710 5.3e-118 428.3 367 64.3
ATR0751G133 Amborella trichopoda HOM05D005156 ORTHO05D006710 1.5e-117 426.8 298 75.2
FAN21G2369 Fragaria x ananassa HOM05D005156 ORTHO05D006710 3.8e-116 422.2 329 67.8
FAN25G0057 Fragaria x ananassa HOM05D005156 ORTHO05D006710 4.9e-116 421.8 329 67.8
HPP92_001936 Vanilla planifolia HOM05D005156 ORTHO05D006710 8.4e-116 421.0 320 67.5
Manes.15G112800 Manihot esculenta HOM05D005156 ORTHO05D006710 4.2e-115 418.7 272 78.3
Psat7g227760 Pisum sativum HOM05D005156 ORTHO05D006710 5.5e-115 418.3 337 66.8
AUR62039839 Chenopodium quinoa HOM05D005156 ORTHO05D006710 6.0e-114 414.8 362 64.1
FAN11G0102 Fragaria x ananassa HOM05D005156 ORTHO05D006710 1.8e-113 413.3 331 66.8
MELO3C015153.2 Cucumis melo HOM05D005156 ORTHO05D006710 5.1e-113 411.8 323 68.7
Rhsim13G0216600 Rhododendron simsii HOM05D005156 ORTHO05D006710 5.1e-113 411.8 354 66.7
arahy.Tifrunner.gnm1.ann1.KCM926 Arachis hypogaea HOM05D005156 ORTHO05D006710 8.7e-113 411.0 325 68.9
arahy.Tifrunner.gnm1.ann1.9TL5ZW Arachis hypogaea HOM05D005156 ORTHO05D006710 2.5e-112 409.5 325 68.6
ClCG03G012920 Citrullus lanatus HOM05D005156 ORTHO05D006710 7.4e-112 407.9 356 63.2
Sabra16G0154700 Salix brachista HOM05D005156 ORTHO05D006710 9.6e-112 407.5 314 70.4
Hund21990 Selenicereus undatus HOM05D005156 ORTHO05D006710 9.6e-112 407.5 336 65.5
Sed0002302 Sechium edule HOM05D005156 ORTHO05D006710 1.6e-111 406.8 338 66.6
Ca_12758_v3 Cicer arietinum L. HOM05D005156 ORTHO05D006710 1.1e-110 404.1 359 64.3
Nitab4.5_0002113g0190 Nicotiana tabacum HOM05D005156 ORTHO05D006710 5.3e-110 401.7 272 75.4
vmacro04002 Vaccinium macrocarpon HOM05D005156 ORTHO05D006710 1.5e-109 400.2 404 59.2
HanXRQChr06g0183211 Helianthus annuus HOM05D005156 ORTHO05D006710 7.6e-109 397.9 310 66.8
Mapoly0048s0046 Marchantia polymorpha HOM05D005156 ORTHO05D006710 1.0e-108 397.5 337 62.9
Lsat_1_v5_gn_2_29420 Lactuca sativa HOM05D005156 ORTHO05D006710 3.8e-108 395.6 335 64.2
SMO147G0151 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.2e-106 390.6 324 65.1
Lj2C655T2 Lonicera japonica HOM05D005156 ORTHO05D006710 1.3e-105 387.1 300 70.3
Pp3c21_8650 Physcomitrium patens HOM05D005156 ORTHO05D006710 2.8e-103 379.4 338 59.2
Os08g0504400 Oryza sativa ssp. japonica HOM05D005156 ORTHO05D006710 4.8e-103 378.6 281 69.8
CDE12G0606 Ceratophyllum demersum HOM05D005156 ORTHO05D006710 2.4e-102 376.3 265 74.3
CBR_g12801 Chara braunii HOM05D005156 ORTHO05D006710 3.4e-101 372.5 301 64.5
AagrBONN_evm.TU.Sc2ySwM_368.760 Anthoceros agrestis HOM05D005156 ORTHO05D006710 1.6e-98 363.6 314 62.1
DCAR_002091 Daucus carota HOM05D005156 ORTHO05D006710 7.4e-96 354.8 305 63.9
Dinv22149 Davidia involucrata HOM05D005156 ORTHO05D006710 7.4e-96 354.8 241 77.2
Aqoxy4G00402 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 9.0e-94 347.8 327 60.6
SHI21395 Sapria himalayana HOM05D005156 ORTHO05D006710 7.7e-93 344.7 274 67.2
BcaB02g11038 Brassica carinata HOM05D005156 ORTHO05D006710 2.9e-92 342.8 196 93.4
SGA_v2.0_scaffold29G12276 Striga asiatica HOM05D005156 ORTHO05D006710 4.6e-90 335.5 214 81.3
MCO15G168 Micromonas commoda HOM05D005156 ORTHO05D006710 1.8e-89 333.6 300 56.7
Zm00001eb251060 Zea mays HOM05D005156 ORTHO05D006710 5.7e-88 328.6 248 66.1
PRCOL_00003626 Prasinoderma coloniale HOM05D005156 ORTHO05D006710 2.2e-87 326.6 296 56.1
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 3.4e-85 319.3 201 88.1
Lj2C684T3 Lonicera japonica HOM05D005156 ORTHO05D006710 5.0e-84 315.5 234 73.9
Hma1.2p1_2309F.1_g319520 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 1.1e-83 314.3 208 77.9
MBI15_g27827_MAGBIO Magnolia biondii HOM05D005156 ORTHO05D006710 9.4e-83 311.2 206 78.2
Medtr4g031220 Medicago truncatula HOM05D005156 ORTHO05D006710 4.8e-79 298.9 231 71.4
Cre02.g144000 Chlamydomonas reinhardtii HOM05D005156 ORTHO05D006710 4.1e-78 295.8 271 57.2
SMO273G0012 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 1.3e-68 264.2 207 66.2
Nn1g08054 Nelumbo nucifera HOM05D005156 ORTHO05D006710 3.0e-65 253.1 167 77.8
Cfa025164 Carpinus fangiana HOM05D005156 ORTHO05D006710 3.6e-58 229.6 306 41.8
COL.COLO4_04116 Corchorus olitorius HOM05D005156 ORTHO05D006710 6.4e-47 192.2 137 73.7
Nn1g08053 Nelumbo nucifera HOM05D005156 ORTHO05D006710 1.1e-46 191.4 143 74.8
Haze_26247 Corylus avellana HOM05D005156 ORTHO05D006710 2.3e-41 173.7 283 39.9
Medtr4g031235 Medicago truncatula HOM05D005156 ORTHO05D006710 2.1e-29 134.0 103 64.1
ATR0585G005 Amborella trichopoda HOM05D005156 ORTHO05D006710 1.8e-25 120.9 90 70.0
Aqoxy1G04277 Aquilegia oxysepala HOM05D005156 ORTHO05D006710 7.6e-24 115.5 93 66.7
Oeu016690.1 Olea europaea HOM05D005156 ORTHO05D006710 9.9e-24 115.2 99 61.6
EL10Ac8g19800 Beta vulgaris HOM05D005156 ORTHO05D006710 1.3e-23 114.8 119 52.1
SMO147G0118 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 6.4e-23 112.5 247 36.8
SalBow6G0988 Salvia bowleyana HOM05D005156 ORTHO05D006710 1.4e-22 111.3 79 68.4
SEGI_37101 Sequoiadendron giganteum HOM05D005156 ORTHO05D006710 3.5e-21 106.7 91 64.8
SMO164G0249 Selaginella moellendorffii HOM05D005156 ORTHO05D006710 3.0e-20 103.6 118 54.2
MELO3C034654.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.6e-16 90.5 62 79.0
MELO3C033715.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.9e-15 87.0 61 72.1
MELO3C034160.2 Cucumis melo HOM05D005156 ORTHO05D006710 2.9e-15 87.0 62 72.6
MELO3C030656.2 Cucumis melo HOM05D005156 ORTHO05D006710 4.9e-15 86.3 62 74.2
SMO147G0310 Selaginella moellendorffii HOM05D000066 ORTHO05D373802 2.7e-13 80.5 106 44.3
MELO3C030457.2 Cucumis melo HOM05D005156 ORTHO05D006710 3.0e-12 77.0 58 72.4
MELO3C016526.2 Cucumis melo HOM05D005156 ORTHO05D006710 6.6e-12 75.9 55 74.5
EL10Ac3g06833 Beta vulgaris HOM05D005156 ORTHO05D006710 8.7e-12 75.5 73 50.7
EL10Ac2g04378 Beta vulgaris HOM05D005156 ORTHO05D006710 1.5e-11 74.7 68 52.9
Hma1.2p1_1115F.1_g258870 Hydrangea macrophylla HOM05D005156 ORTHO05D006710 2.8e-10 70.5 53 60.4
EL10Ac8g20129 Beta vulgaris HOM05D005156 ORTHO05D000004 3.4e-08 63.5 45 64.4
EL10Ac2g02892 Beta vulgaris HOM05D005156 ORTHO05D039042 4.5e-08 63.2 43 67.4
Rhsim05G0077000 Rhododendron simsii HOM05D003003 ORTHO05D008343 2.2e-07 60.8 37 81.1
EL10Ac9g22728 Beta vulgaris HOM05D005156 ORTHO05D000004 2.9e-07 60.5 36 75.0
EL10As2g23197 Beta vulgaris HOM05D005156 ORTHO05D039042 2.9e-07 60.5 36 75.0
SMO147G0023 Selaginella moellendorffii HOM05D005156 ORTHO05D376049 1.4e-06 58.2 124 35.5


User provided reference genes

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