Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1263.4 635 100.0
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1255.4 635 99.1
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1241.1 634 97.8
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1239.2 633 97.5
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1236.9 633 97.5
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1229.5 633 96.8
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1224.5 633 96.4
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1224.2 633 96.5
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1219.5 633 95.9
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1219.5 633 95.9
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1219.5 633 95.9
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1217.6 633 95.6
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1213.0 633 95.4
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1199.9 635 93.2
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1186.8 635 92.4
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1185.6 635 92.4
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1182.5 632 92.7
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1179.9 632 92.4
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1165.6 635 89.9
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1164.8 633 90.2
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1156.0 635 90.7
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1154.8 634 89.3
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1154.0 634 89.0
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1152.9 635 89.3
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1151.0 630 89.2
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1151.0 634 88.5
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1150.6 634 87.7
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1149.8 634 88.5
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1149.8 633 88.2
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1149.0 634 88.0
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1149.0 635 88.5
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1149.0 635 88.3
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1148.7 635 88.5
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1148.7 637 88.2
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1148.3 637 88.4
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1147.9 640 87.7
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1145.6 637 87.8
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1145.6 635 88.0
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1145.6 635 87.6
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1145.2 634 88.0
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1144.4 634 87.9
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1144.0 635 88.0
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1142.9 634 87.7
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1142.9 634 88.0
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1142.9 634 88.2
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1142.9 634 87.7
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1142.1 634 87.9
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1141.7 637 87.1
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1141.3 634 87.7
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1141.3 634 87.4
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1140.6 634 87.9
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1140.2 634 87.7
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1140.2 635 87.1
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1139.8 634 87.4
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1139.4 644 86.6
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1139.0 634 87.4
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1138.6 630 87.9
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1138.6 635 86.9
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1138.6 634 87.4
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1138.3 633 87.5
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1138.3 634 87.2
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1137.1 634 87.9
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1135.6 634 87.2
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1135.6 634 87.5
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1135.2 628 88.4
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1134.4 629 87.8
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1134.4 635 87.1
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1133.6 634 86.9
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1133.6 634 86.9
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1132.5 634 86.9
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1132.1 632 87.7
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1131.7 634 86.3
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1131.7 634 86.9
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1129.0 634 87.1
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1128.6 634 86.6
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1128.6 634 86.1
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1127.1 634 87.1
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1126.7 630 87.1
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1126.3 633 86.1
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1125.2 634 86.9
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1124.8 628 87.1
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 632 86.9
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 634 86.4
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1122.8 661 84.0
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1122.8 634 85.6
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1122.8 634 86.3
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1121.7 632 86.6
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1120.5 634 86.8
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1120.1 635 86.9
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1115.1 634 86.1
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1113.6 631 87.2
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1111.3 634 85.5
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1107.8 634 85.3
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1106.7 634 85.0
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1105.5 634 85.5
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1092.8 637 84.6
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1090.9 634 84.1
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 8.7e-312 1072.8 582 89.9
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 6.2e-309 1063.5 635 80.9
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 1.4e-308 1062.4 644 82.9
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 4.0e-308 1060.8 628 81.7
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 5.4e-305 1050.4 628 80.4
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 4.2e-297 1024.2 630 78.7
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 2.6e-291 1005.0 632 77.4
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 4.9e-282 974.2 534 88.8
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 9.3e-281 969.9 541 88.2
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 1.9e-278 962.2 534 87.5
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 4.8e-269 931.0 645 72.4
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 1.0e-266 923.3 629 72.5
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 9.4e-265 916.8 648 71.1
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 9.7e-262 906.7 634 72.6
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 5.9e-259 897.5 496 88.3
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 6.3e-245 850.9 503 83.9
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 3.5e-243 845.1 635 70.1
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 4.2e-241 838.2 503 82.5
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 8.6e-234 813.9 634 68.3
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 1.1e-233 813.5 637 64.5
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 9.5e-233 810.4 499 80.6
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.5e-225 786.6 638 61.6
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 1.4e-199 700.3 444 78.6
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 9.6e-193 677.6 533 67.2
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 4.0e-183 645.6 644 52.8
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 5.3e-175 618.6 443 71.3
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 7.6e-174 614.8 354 84.5
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 3.2e-164 582.8 408 73.8
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 4.5e-158 562.4 312 90.1
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 1.1e-148 531.2 295 88.8
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 2.7e-147 526.6 274 96.0
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 2.8e-112 410.2 532 41.9
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 7.8e-94 349.0 198 85.4
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 4.1e-87 326.6 237 69.6
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 9.5e-84 315.5 182 85.7
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 1.5e-81 308.1 231 67.1
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 3.6e-75 287.0 162 84.6
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 3.4e-73 280.4 163 83.4
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 7.3e-68 262.7 634 31.9
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 2.2e-56 224.6 273 47.6
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 2.5e-52 211.1 229 54.1
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 2.4e-42 177.9 102 84.3
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 6.5e-40 169.9 102 80.4
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 1.4e-39 168.7 104 76.9
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 7.2e-39 166.4 99 81.8
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 2.1e-38 164.9 158 60.1
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 8.8e-37 159.5 90 87.8
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 2.0e-36 158.3 74 100.0
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 4.3e-36 157.1 86 83.7
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 9.1e-34 149.4 127 63.0
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 7.7e-33 146.4 172 50.0
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 1.3e-32 145.6 91 78.0
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 2.3e-21 108.2 116 53.4
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 3.9e-21 107.5 63 81.0
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 2.0e-20 105.1 53 96.2
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 2.6e-17 94.7 61 73.8
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 3.8e-16 90.9 51 82.4
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 5.0e-16 90.5 60 71.7
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 2.5e-15 88.2 49 81.6
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 4.4e-12 77.4 56 62.5
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 2.0e-09 68.6 65 52.3


User provided reference genes

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