Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 1.1e-187 659.8 344 100.0
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 2.9e-175 618.6 345 93.6
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 1.1e-174 616.7 345 93.3
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 1.4e-166 589.7 347 90.2
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 3.2e-166 588.6 345 89.6
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 3.9e-164 581.6 330 90.9
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 1.9e-163 579.3 330 90.6
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 1.9e-163 579.3 330 90.6
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 1.2e-162 576.6 342 88.3
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 8.9e-161 570.5 325 91.7
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 2.6e-160 568.9 343 87.2
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 3.4e-160 568.5 341 88.6
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 6.4e-151 537.7 373 77.7
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 6.4e-143 511.1 305 85.6
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 1.7e-127 459.9 332 72.0
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 6.5e-127 458.0 310 75.5
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 3.2e-126 455.7 325 71.1
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 2.1e-125 453.0 341 71.0
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 2.7e-125 452.6 312 73.4
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 5.1e-124 448.4 304 74.0
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 5.1e-124 448.4 312 73.1
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 1.1e-123 447.2 307 73.9
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 3.3e-123 445.7 302 73.8
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 4.3e-123 445.3 332 69.9
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 5.7e-123 444.9 311 72.7
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 1.6e-122 443.4 337 68.5
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 2.1e-122 443.0 305 73.1
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 2.8e-122 442.6 316 70.9
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 3.7e-122 442.2 333 69.1
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 6.2e-122 441.4 337 68.8
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 1.8e-121 439.9 348 66.4
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 6.9e-121 438.0 308 74.7
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 1.2e-120 437.2 335 68.1
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 1.2e-120 437.2 313 70.6
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 1.5e-120 436.8 330 67.9
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 3.4e-120 435.6 303 74.9
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 4.5e-120 435.3 337 67.4
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 5.8e-120 434.9 303 74.6
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 2.9e-119 432.6 316 69.6
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 8.4e-119 431.0 326 68.7
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 2.5e-118 429.5 333 67.0
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 3.2e-118 429.1 288 74.0
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 4.2e-118 428.7 317 70.3
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 7.2e-118 427.9 341 64.5
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 9.3e-118 427.6 331 67.7
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 2.1e-117 426.4 306 71.2
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 2.7e-117 426.0 332 65.7
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 3.5e-117 425.6 338 66.6
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 3.5e-117 425.6 337 66.5
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 6.1e-117 424.9 303 71.0
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 1.0e-116 424.1 292 72.6
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 1.0e-116 424.1 347 64.8
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 1.3e-116 423.7 292 71.9
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 1.3e-116 423.7 292 72.6
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 1.8e-116 423.3 292 72.6
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 3.0e-116 422.5 298 71.8
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 3.9e-116 422.2 344 65.7
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 1.5e-115 420.2 328 65.2
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 1.5e-115 420.2 333 65.2
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 1.9e-115 419.9 332 66.6
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 2.5e-115 419.5 304 68.1
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 4.3e-115 418.7 308 69.5
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 1.6e-114 416.8 288 72.6
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 2.2e-114 416.4 314 70.1
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 2.2e-114 416.4 315 67.3
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 2.2e-114 416.4 319 67.4
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 3.7e-114 415.6 298 69.1
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 6.3e-114 414.8 334 63.2
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 8.2e-114 414.5 302 70.2
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 1.4e-113 413.7 298 69.8
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 5.3e-113 411.8 326 64.1
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 1.1e-110 404.1 298 69.1
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 2.1e-109 399.8 304 67.1
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 3.9e-108 395.6 303 65.0
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 6.7e-108 394.8 303 68.3
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 2.0e-107 393.3 304 68.4
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 1.4e-105 387.1 315 63.8
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 1.8e-105 386.7 291 70.8
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 5.3e-105 385.2 265 74.0
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 7.7e-104 381.3 312 63.8
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 4.7e-101 372.1 297 61.6
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 1.8e-100 370.2 313 62.0
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 8.8e-100 367.9 458 46.9
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 5.9e-96 355.1 331 59.8
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 1.3e-95 354.0 313 60.4
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 1.3e-95 354.0 363 55.9
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 1.7e-95 353.6 453 46.1
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 1.2e-93 347.4 265 63.4
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 4.0e-92 342.4 239 72.4
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 1.8e-89 333.6 237 72.2
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 2.4e-89 333.2 556 40.1
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 1.2e-88 330.9 233 69.1
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 5.9e-88 328.6 278 59.0
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 2.9e-87 326.2 289 59.2
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 8.5e-87 324.7 232 68.5
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 1.5e-86 323.9 295 56.6
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 3.6e-85 319.3 236 70.8
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 8.8e-84 314.7 288 56.2
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 1.6e-80 303.9 227 68.3
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 5.9e-80 302.0 298 53.0
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 2.9e-79 299.7 362 50.6
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 7.5e-75 285.0 184 76.1
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 9.8e-59 231.5 175 69.1
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 9.2e-57 224.9 142 76.1
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 6.0e-56 222.2 190 58.4
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 1.7e-55 220.7 297 43.1
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 1.7e-55 220.7 168 63.7
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 1.9e-54 217.2 197 60.9
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 1.1e-49 201.4 316 38.0
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 2.7e-48 196.8 193 51.3
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 2.3e-47 193.7 340 40.0
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 1.9e-46 190.7 199 53.8
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 4.3e-46 189.5 111 91.0
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 2.8e-37 160.2 91 92.3
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 9.9e-35 151.8 214 42.1
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 2.1e-29 134.0 213 37.6
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 1.3e-26 124.8 98 65.3
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 1.3e-23 114.8 84 65.5
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 3.0e-23 113.6 82 65.9
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 4.0e-20 103.2 54 94.4
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 9.0e-20 102.1 110 55.5
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 2.6e-19 100.5 72 65.3
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 4.3e-14 83.2 169 31.4
Psat4g126360 Pisum sativum HOM05D001587 ORTHO05D037360 2.1e-13 80.9 55 65.5
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 1.1e-12 78.6 108 45.4
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.0e-10 72.0 58 65.5
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 4.9e-10 69.7 58 63.8
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 4.9e-10 69.7 58 63.8
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 4.9e-10 69.7 58 63.8
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 4.9e-10 69.7 58 63.8
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 6.5e-10 69.3 58 63.8
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 8.4e-10 68.9 85 50.6
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.2e-09 67.0 58 62.1
Sabra02G0024500 Salix brachista HOM05D001587 ORTHO05D037360 6.7e-07 59.3 38 76.3
Psat2g069600 Pisum sativum HOM05D000263 ORTHO05D009363 2.5e-06 57.4 44 63.6


User provided reference genes

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