Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 4.0e-267 924.5 562 100.0
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 1.5e-202 709.9 563 82.9
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 2.0e-202 709.5 592 74.2
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 3.0e-190 669.1 564 77.5
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 7.4e-189 664.5 563 77.4
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 3.8e-161 572.4 560 69.1
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 4.2e-160 568.9 560 67.9
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 1.2e-159 567.4 565 68.7
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 2.7e-159 566.2 486 76.5
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 3.6e-159 565.8 565 68.7
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 6.1e-159 565.1 561 68.1
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 2.7e-154 549.7 567 66.1
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 1.3e-145 520.8 563 63.9
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 1.8e-142 510.4 566 58.7
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 7.1e-115 418.7 609 48.4
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 1.2e-114 417.9 611 53.8
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 2.3e-113 413.7 560 48.8
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 1.1e-112 411.4 566 50.4
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 4.0e-110 402.9 566 47.9
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 9.0e-110 401.7 566 54.9
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 1.7e-108 397.5 611 44.8
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 2.2e-108 397.1 615 45.9
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 1.4e-107 394.4 567 51.9
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 2.4e-107 393.7 594 51.3
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 5.1e-105 386.0 569 48.0
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 5.6e-104 382.5 568 52.3
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 9.6e-104 381.7 606 43.9
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 3.6e-103 379.8 567 50.8
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 5.3e-102 375.9 587 52.6
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 6.9e-102 375.6 592 50.3
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 1.2e-101 374.8 567 51.9
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 2.4e-99 367.1 568 47.4
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 4.2e-99 366.3 596 47.5
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 5.5e-99 365.9 569 47.5
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 5.5e-99 365.9 571 48.0
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 1.6e-98 364.4 566 49.6
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 6.0e-98 362.5 562 53.2
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 3.0e-97 360.1 533 52.0
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 3.9e-97 359.8 595 48.9
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 6.7e-97 359.0 608 49.7
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 8.7e-97 358.6 586 47.4
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 1.9e-96 357.5 569 45.0
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 8.1e-95 352.1 563 44.9
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 1.1e-94 351.7 563 45.8
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 9.0e-94 348.6 565 43.7
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 5.8e-93 345.9 573 53.1
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 5.8e-93 345.9 597 52.3
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 7.6e-93 345.5 578 43.3
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 2.2e-92 344.0 502 50.0
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 2.2e-92 344.0 560 44.3
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 4.9e-92 342.8 532 44.0
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 6.5e-92 342.4 566 50.4
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 6.5e-92 342.4 564 47.7
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 4.2e-91 339.7 561 47.4
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 4.2e-91 339.7 561 47.4
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 4.2e-91 339.7 501 49.5
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 7.1e-91 339.0 569 49.0
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 7.1e-91 339.0 574 51.2
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 1.2e-90 338.2 570 50.9
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 1.6e-90 337.8 591 51.3
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 3.5e-90 336.7 563 47.1
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 4.6e-90 336.3 597 46.2
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 2.3e-89 334.0 543 51.9
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 5.1e-89 332.8 622 43.6
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 6.7e-89 332.4 563 46.4
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 1.5e-88 331.3 562 47.7
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.1e-87 327.4 569 46.2
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 2.8e-87 327.0 605 46.0
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 4.1e-86 323.2 564 51.6
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 6.9e-86 322.4 569 42.9
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 6.9e-86 322.4 583 43.7
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 3.8e-84 316.6 567 46.9
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 8.4e-84 315.5 567 46.4
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 1.1e-83 315.1 564 49.3
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 1.4e-83 314.7 654 44.6
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 7.2e-83 312.4 576 43.4
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 1.2e-82 311.6 564 48.6
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 3.6e-82 310.1 564 48.6
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 6.1e-82 309.3 568 40.1
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 1.0e-81 308.5 229 69.0
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 3.3e-80 303.5 558 51.1
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 4.3e-80 303.1 564 48.9
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 2.8e-79 300.4 514 50.4
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 1.1e-78 298.5 611 44.5
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 1.8e-78 297.7 560 43.2
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 1.3e-76 291.6 567 48.1
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 8.8e-73 278.9 533 41.7
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 1.5e-72 278.1 266 60.2
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 7.4e-72 275.8 533 38.8
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 9.7e-72 275.4 598 45.2
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 1.4e-70 271.6 641 43.7
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 3.1e-70 270.4 271 59.0
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 7.7e-69 265.8 191 72.8
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 1.0e-68 265.4 514 47.5
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 5.2e-65 253.1 314 50.0
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 2.2e-63 247.7 530 48.7
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 3.5e-61 240.4 189 64.0
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 1.1e-59 235.3 569 45.2
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 1.9e-59 234.6 230 55.2
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.9e-59 234.6 189 63.0
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 1.6e-58 231.5 265 53.2
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 8.0e-58 229.2 501 41.3
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 2.3e-57 227.6 149 71.8
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 3.0e-57 227.3 169 66.3
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 6.7e-57 226.1 148 70.9
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.5e-56 224.9 167 66.5
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 2.2e-55 221.1 235 55.3
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 2.8e-55 220.7 255 49.4
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 3.1e-54 217.2 595 36.5
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 9.1e-54 215.7 581 43.7
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 2.7e-53 214.2 148 68.9
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 1.3e-52 211.8 219 53.9
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 4.2e-51 206.8 604 38.7
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 2.7e-50 204.1 159 63.5
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 6.1e-50 203.0 149 66.4
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 1.0e-49 202.2 221 52.5
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 3.7e-47 193.7 222 50.0
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 1.9e-43 181.4 485 44.9
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 9.5e-43 179.1 170 57.6
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 2.3e-41 174.5 113 69.9
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 6.8e-41 172.9 454 42.5
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 1.5e-40 171.8 113 68.1
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 1.3e-36 158.7 219 44.7
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 2.9e-31 141.0 256 37.1
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.7e-31 140.6 84 75.0
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.7e-31 140.6 84 75.0
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 3.0e-28 131.0 165 52.7
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 3.9e-28 130.6 207 42.0
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 4.3e-27 127.1 149 57.7
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 4.7e-26 123.6 395 43.0
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 5.2e-25 120.2 381 43.6
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 5.2e-25 120.2 381 43.6
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 2.0e-24 118.2 151 54.3
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 1.7e-23 115.2 502 29.9
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 4.1e-22 110.5 146 54.8
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 5.4e-22 110.2 66 75.8
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 2.0e-21 108.2 204 37.3
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 1.3e-20 105.5 131 55.7
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 1.3e-20 105.5 134 52.2
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 2.8e-18 97.8 131 55.7
COL.COLO4_33038 Corchorus olitorius HOM05D004380 ORTHO05D005134 6.2e-18 96.7 87 63.2
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 2.2e-15 88.2 58 65.5
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 2.9e-15 87.8 77 66.2
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 8.3e-15 86.3 79 55.7
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.0e-12 79.3 128 42.2
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 5.1e-12 77.0 65 64.6
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 7.3e-11 73.2 70 55.7
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 3.1e-09 67.8 137 32.8
arahy.Tifrunner.gnm1.ann1.FR68MS Arachis hypogaea HOM05D005435 ORTHO05D005134 2.0e-08 65.1 51 76.5
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 5.8e-08 63.5 241 35.7
A09p34380 Brassica napus HOM05D004380 ORTHO05D005134 4.1e-06 57.4 51 56.9
TPR.G40179 Trifolium pratense HOM05D004380 ORTHO05D005134 5.4e-06 57.0 34 79.4


User provided reference genes

Program Settings