Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G31330 Arabidopsis thaliana HOM05D005291 ORTHO05D006556 6.4e-120 434.1 222 100.0
AL1G49710 Arabidopsis lyrata HOM05D005291 ORTHO05D006556 1.0e-117 426.8 222 99.1
Carub.0001s2977 Capsella rubella HOM05D005291 ORTHO05D006556 3.7e-115 418.3 222 96.4
CARHR030790 Cardamine hirsuta HOM05D005291 ORTHO05D006556 5.3e-114 414.5 222 95.0
Thhalv10008731m.g Eutrema salsugineum HOM05D005291 ORTHO05D006556 2.0e-113 412.5 222 95.0
Sp1g27160 Schrenkiella parvula HOM05D005291 ORTHO05D006556 8.4e-112 407.1 220 94.1
BcaC05g27163 Brassica carinata HOM05D005291 ORTHO05D006556 7.1e-111 404.1 222 92.8
A09p34920 Brassica napus HOM05D005291 ORTHO05D006556 7.1e-111 404.1 222 92.8
BolC5t31789H Brassica oleracea HOM05D005291 ORTHO05D006556 7.1e-111 404.1 222 92.8
BraA09t39022Z Brassica rapa HOM05D005291 ORTHO05D006556 7.1e-111 404.1 222 92.8
C05p30540 Brassica napus HOM05D005291 ORTHO05D006556 2.1e-110 402.5 222 92.3
BcaB07g32794 Brassica carinata HOM05D005291 ORTHO05D006556 3.5e-110 401.7 223 91.5
Aa31LG9G15960 Aethionema arabicum HOM05D005291 ORTHO05D006556 2.1e-107 392.5 223 87.9
BcaB04g18162 Brassica carinata HOM05D005291 ORTHO05D006556 3.7e-107 391.7 223 90.6
A07p09430 Brassica napus HOM05D005291 ORTHO05D006556 8.2e-107 390.6 222 90.1
BraA07t28739Z Brassica rapa HOM05D005291 ORTHO05D006556 8.2e-107 390.6 222 90.1
BcaC07g37765 Brassica carinata HOM05D005291 ORTHO05D006556 2.6e-105 385.6 223 88.8
BolC8t48151H Brassica oleracea HOM05D005291 ORTHO05D006556 2.6e-105 385.6 223 88.8
BolC7t41950H Brassica oleracea HOM05D005291 ORTHO05D006556 3.4e-105 385.2 222 89.2
THA.LOC104814370 Tarenaya hassleriana HOM05D005291 ORTHO05D006556 2.5e-103 379.0 227 86.3
A08p10630 Brassica napus HOM05D005291 ORTHO05D006556 4.2e-103 378.3 222 87.8
BraA08t33062Z Brassica rapa HOM05D005291 ORTHO05D006556 1.0e-101 373.6 222 86.9
Gohir.A06G138900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 2.7e-94 349.0 227 79.7
Gohir.A05G143600 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.0e-93 347.1 226 79.2
Gorai.010G170600 Gossypium raimondii HOM05D005291 ORTHO05D006556 1.0e-93 347.1 227 79.3
Cpa.g.sc882.3 Carica papaya HOM05D005291 ORTHO05D006556 1.8e-93 346.3 230 78.7
Gohir.D06G146300 Gossypium hirsutum HOM05D005291 ORTHO05D006556 3.0e-93 345.5 227 78.9
Ciclev10016540m.g Citrus clementina HOM05D005291 ORTHO05D006556 8.8e-93 344.0 232 76.7
Duzib235G0861 Durio zibethinus HOM05D005291 ORTHO05D006556 8.8e-93 344.0 229 77.7
Duzib160G0628 Durio zibethinus HOM05D005291 ORTHO05D006556 1.1e-92 343.6 225 77.3
Gohir.D05G145900 Gossypium hirsutum HOM05D005291 ORTHO05D006556 1.5e-92 343.2 225 78.7
Gorai.009G149800 Gossypium raimondii HOM05D005291 ORTHO05D006556 1.5e-92 343.2 225 78.7
Thecc.06G135600 Theobroma cacao HOM05D005291 ORTHO05D006556 3.3e-92 342.0 230 78.7
C07p14510 Brassica napus HOM05D005291 ORTHO05D006556 7.4e-92 340.9 178 94.9
COL.COLO4_30928 Corchorus olitorius HOM05D005291 ORTHO05D006556 2.2e-91 339.3 227 77.1
Sabra01G0058700 Salix brachista HOM05D005291 ORTHO05D006556 4.8e-91 338.2 228 77.6
Manes.16G056000 Manihot esculenta HOM05D005291 ORTHO05D006556 6.3e-91 337.8 231 77.1
Potri.001G081500 Populus trichocarpa HOM05D005291 ORTHO05D006556 1.8e-90 336.3 226 77.4
Atru.chr10.620 Acer truncatum HOM05D005291 ORTHO05D006556 3.1e-90 335.5 225 77.3
Haze_21115 Corylus avellana HOM05D005291 ORTHO05D006556 7.7e-89 330.9 232 74.6
TWI09G0987 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 7.7e-89 330.9 228 74.6
QL05p062860 Quercus lobata HOM05D005291 ORTHO05D006556 2.9e-88 328.9 228 75.0
Haze_21121 Corylus avellana HOM05D005291 ORTHO05D006556 3.8e-88 328.6 232 74.1
TWI73G1099 Tripterygium wilfordii HOM05D005291 ORTHO05D006556 6.5e-88 327.8 225 73.3
CANSAT35G1185 Cannabis sativa HOM05D005291 ORTHO05D006556 8.5e-88 327.4 232 75.4
PGSC0003DMG400021144 Solanum tuberosum HOM05D005291 ORTHO05D006556 1.1e-87 327.0 230 75.7
Medtr2g029370 Medicago truncatula HOM05D005291 ORTHO05D006556 1.4e-87 326.6 225 73.8
Prupe.4G105600 Prunus persica HOM05D005291 ORTHO05D006556 1.4e-87 326.6 232 74.1
Lj6g0012734 Lotus japonicus HOM05D005291 ORTHO05D006556 1.9e-87 326.2 231 74.0
Aqoxy1G01510 Aquilegia oxysepala HOM05D005291 ORTHO05D006556 3.2e-87 325.5 225 76.4
CDE01G0253 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 7.2e-87 324.3 227 74.9
VMungo1215G2240 Vigna mungo HOM05D005291 ORTHO05D006556 7.2e-87 324.3 226 74.3
CiPaw.10G112100 Carya illinoinensis HOM05D005291 ORTHO05D006556 1.2e-86 323.6 232 73.7
Sopen02g018590 Solanum pennellii HOM05D005291 ORTHO05D006556 1.6e-86 323.2 229 74.7
CAN.G675.17 Capsicum annuum HOM05D005291 ORTHO05D006556 2.1e-86 322.8 229 74.7
Phvul.L001631 Phaseolus vulgaris HOM05D005291 ORTHO05D006556 2.7e-86 322.4 226 72.6
Sopen02g018600 Solanum pennellii HOM05D005291 ORTHO05D006556 2.7e-86 322.4 229 74.7
CDE12G0048 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 3.6e-86 322.0 227 74.4
Eucgr.K00389 Eucalyptus grandis HOM05D005291 ORTHO05D006556 3.6e-86 322.0 228 73.7
arahy.Tifrunner.gnm1.ann1.PX7M3V Arachis hypogaea HOM05D005291 ORTHO05D006556 4.7e-86 321.6 231 72.3
Sed0015115 Sechium edule HOM05D005291 ORTHO05D006556 4.7e-86 321.6 226 73.5
Sed0028144 Sechium edule HOM05D005291 ORTHO05D006556 4.7e-86 321.6 226 73.5
Solyc02g069450.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 4.7e-86 321.6 229 74.7
CDE05G2870 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 6.1e-86 321.2 225 74.2
SGA_v2.0_scaffold298G47643 Striga asiatica HOM05D005291 ORTHO05D006556 6.1e-86 321.2 227 73.1
Solyc02g069460.3 Solanum lycopersicum HOM05D005291 ORTHO05D006556 1.4e-85 320.1 229 74.2
CAN.G675.15 Capsicum annuum HOM05D005291 ORTHO05D006556 1.8e-85 319.7 230 73.5
MELO3C021788.2 Cucumis melo HOM05D005291 ORTHO05D006556 2.3e-85 319.3 228 73.2
Lj1A1140T41 Lonicera japonica HOM05D005291 ORTHO05D006556 2.3e-85 319.3 229 72.9
Cc09_g06610 Coffea canephora HOM05D005291 ORTHO05D006556 3.0e-85 318.9 233 73.4
MD10G1238800 Malus domestica HOM05D005291 ORTHO05D006556 3.0e-85 318.9 232 72.0
Nn7g37951 Nelumbo nucifera HOM05D005291 ORTHO05D006556 3.9e-85 318.5 225 73.8
RcHm_v2.0_Chr5g0019221 Rosa chinensis HOM05D005291 ORTHO05D006556 5.1e-85 318.2 228 74.1
Psat1g169240 Pisum sativum HOM05D005291 ORTHO05D006556 6.7e-85 317.8 179 84.9
arahy.Tifrunner.gnm1.ann1.VHAI7W Arachis hypogaea HOM05D005291 ORTHO05D006556 1.1e-84 317.0 229 71.2
CiPaw.09G150600 Carya illinoinensis HOM05D005291 ORTHO05D006556 1.1e-84 317.0 230 74.3
Dinv01911 Davidia involucrata HOM05D005291 ORTHO05D006556 1.5e-84 316.6 232 73.3
Migut.M01951 Erythranthe guttata HOM05D005291 ORTHO05D006556 1.5e-84 316.6 226 73.5
MD05G1259200 Malus domestica HOM05D005291 ORTHO05D006556 2.0e-84 316.2 231 73.2
FAN21G3936 Fragaria x ananassa HOM05D005291 ORTHO05D006556 2.6e-84 315.8 228 73.2
FAN25G3276 Fragaria x ananassa HOM05D005291 ORTHO05D006556 2.6e-84 315.8 228 73.2
Oeu008978.1 Olea europaea HOM05D005291 ORTHO05D006556 2.6e-84 315.8 229 72.9
CsaV3_1G046680 Cucumis sativus L. HOM05D005291 ORTHO05D006556 3.3e-84 315.5 226 73.9
TPR.G26533 Trifolium pratense HOM05D005291 ORTHO05D006556 7.4e-84 314.3 227 70.9
FvH4_3g11800 Fragaria vesca HOM05D005291 ORTHO05D006556 9.7e-84 313.9 228 72.8
MSTRG.7576 Avicennia marina HOM05D005291 ORTHO05D006556 2.8e-83 312.4 230 71.7
TAR626G0502 Trochodendron aralioides HOM05D005291 ORTHO05D006556 2.8e-83 312.4 224 71.9
Lalb_Chr18g0057801 Lupinus albus HOM05D005291 ORTHO05D006556 4.8e-83 311.6 235 70.2
Glyma.05G022900 Glycine max HOM05D005291 ORTHO05D006556 6.3e-83 311.2 226 72.6
Actinidia33638 Actinidia chinensis HOM05D005291 ORTHO05D006556 1.1e-82 310.5 226 73.5
MSTRG.16324 Avicennia marina HOM05D005291 ORTHO05D006556 1.1e-82 310.5 231 70.6
HanXRQChr17g0563071 Helianthus annuus HOM05D005291 ORTHO05D006556 1.4e-82 310.1 228 72.8
Hma1.2p1_0326F.1_g126220 Hydrangea macrophylla HOM05D005291 ORTHO05D006556 3.1e-82 308.9 228 70.2
CDE02G3915 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 5.3e-82 308.1 221 71.0
unitig_92.g28186 Utricularia gibba HOM05D005291 ORTHO05D006556 7.0e-82 307.8 229 71.2
PSO017G5348 Papaver somniferum HOM05D005291 ORTHO05D006556 9.1e-82 307.4 179 82.1
PSO170G0936 Papaver somniferum HOM05D005291 ORTHO05D006556 9.1e-82 307.4 179 82.1
Rhsim13G0127200 Rhododendron simsii HOM05D005291 ORTHO05D006556 2.0e-81 306.2 229 71.2
SGA_v2.0_scaffold223G42900 Striga asiatica HOM05D005291 ORTHO05D006556 2.6e-81 305.8 228 71.5
Sc10g0008690 Simmondsia chinensis HOM05D005291 ORTHO05D006556 3.5e-81 305.4 223 70.9
Ah.01g008620 Amaranthus hybridus HOM05D005291 ORTHO05D006556 4.5e-81 305.1 231 71.0
Peaxi162Scf00267g01017 Petunia axillaris HOM05D005291 ORTHO05D006556 5.9e-81 304.7 228 71.1
Ca_00782_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 7.7e-81 304.3 168 85.1
Ca_31080_v3 Cicer arietinum L. HOM05D005291 ORTHO05D006556 7.7e-81 304.3 168 85.1
Lsat_1_v5_gn_6_37081 Lactuca sativa HOM05D005291 ORTHO05D006556 7.7e-81 304.3 203 77.8
Ah.01g022810 Amaranthus hybridus HOM05D005291 ORTHO05D006556 1.3e-80 303.5 232 69.8
AUR62013057 Chenopodium quinoa HOM05D005291 ORTHO05D006556 1.7e-80 303.1 234 68.4
vmacro03483 Vaccinium macrocarpon HOM05D005291 ORTHO05D006556 1.7e-80 303.1 230 70.0
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 8.5e-80 300.8 237 67.1
AUR62010064 Chenopodium quinoa HOM05D005291 ORTHO05D006556 1.5e-79 300.1 234 67.5
EL10Ac9g21406 Beta vulgaris HOM05D005291 ORTHO05D006556 2.5e-79 299.3 232 69.4
HanXRQChr12g0368521 Helianthus annuus HOM05D005291 ORTHO05D006556 2.5e-79 299.3 231 70.1
HPP92_017743 Vanilla planifolia HOM05D005291 ORTHO05D006556 1.4e-77 293.5 229 66.4
ECA234G0485 Erigeron canadensis HOM05D005291 ORTHO05D006556 3.0e-77 292.4 214 71.5
Cfa000743 Carpinus fangiana HOM05D005291 ORTHO05D006556 5.2e-77 291.6 157 89.2
Zm00001eb213670 Zea mays HOM05D005291 ORTHO05D006556 2.6e-76 289.3 209 69.9
ATR0763G286 Amborella trichopoda HOM05D005291 ORTHO05D006556 2.4e-74 282.7 227 65.2
Os03g0778100 Oryza sativa ssp. japonica HOM05D005291 ORTHO05D006556 1.6e-73 280.0 187 73.8
Actinidia29307 Actinidia chinensis HOM05D005291 ORTHO05D006556 2.2e-72 276.2 229 64.6
ClCG01G009000 Citrullus lanatus HOM05D005291 ORTHO05D006556 1.6e-70 270.0 200 72.0
Oeu008714.1 Olea europaea HOM05D005291 ORTHO05D006556 3.2e-63 245.7 229 63.3
Pp3c21_8800 Physcomitrium patens HOM05D005291 ORTHO05D006556 5.5e-63 245.0 222 59.0
SMO367G0762 Selaginella moellendorffii HOM05D005291 ORTHO05D006556 3.6e-62 242.3 169 68.0
Nitab4.5_0008761g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 6.1e-62 241.5 225 61.8
Pp3c22_10850 Physcomitrium patens HOM05D005291 ORTHO05D006556 1.8e-61 240.0 201 61.2
Pp3c11_18230 Physcomitrium patens HOM05D005291 ORTHO05D006556 6.8e-61 238.0 200 59.5
Pp3c18_10730 Physcomitrium patens HOM05D005291 ORTHO05D006556 6.8e-61 238.0 202 61.9
Mapoly0075s0057 Marchantia polymorpha HOM05D005291 ORTHO05D006556 6.3e-59 231.5 230 55.7
CBR_g568 Chara braunii HOM05D005291 ORTHO05D006556 1.0e-56 224.2 210 56.2
Nitab4.5_0001312g0020 Nicotiana tabacum HOM05D005291 ORTHO05D006556 2.3e-56 223.0 221 60.2
AagrBONN_evm.TU.Sc2ySwM_344.4326 Anthoceros agrestis HOM05D005291 ORTHO05D006556 3.0e-53 212.6 209 56.9
Potri.003G148900 Populus trichocarpa HOM05D005291 ORTHO05D006556 7.8e-49 198.0 151 72.2
Cre09.g412100 Chlamydomonas reinhardtii HOM05D005291 ORTHO05D006556 2.3e-45 186.4 210 48.1
MCO07G173 Micromonas commoda HOM05D005291 ORTHO05D006556 3.1e-45 186.0 155 58.1
CDE12G0451 Ceratophyllum demersum HOM05D005291 ORTHO05D006556 1.9e-39 166.8 150 66.0
PRCOL_00005797 Prasinoderma coloniale HOM05D005291 ORTHO05D006556 6.4e-35 151.8 183 44.3
Lalb_Chr20g0119941 Lupinus albus HOM05D005291 ORTHO05D006556 3.3e-31 139.4 77 77.9
Solyc08g074307.2 Solanum lycopersicum HOM05D005291 ORTHO05D006556 3.5e-25 119.4 125 62.4
BcaC03g16812 Brassica carinata HOM05D005291 ORTHO05D006556 3.0e-24 116.3 60 85.0
Nitab4.5_0001219g0180 Nicotiana tabacum HOM05D005291 ORTHO05D006556 1.2e-22 110.9 129 58.1
arahy.Tifrunner.gnm1.ann1.7UV7DW Arachis hypogaea HOM05D005291 ORTHO05D083431 4.4e-20 102.4 140 45.7
Nitab4.5_0005250g0030 Nicotiana tabacum HOM05D005291 ORTHO05D006556 4.0e-13 79.3 108 52.8
HanXRQChr16g0517321 Helianthus annuus HOM05D005291 ORTHO05D006556 1.8e-08 63.9 44 72.7


User provided reference genes

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