Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G29950 Arabidopsis thaliana HOM05D004468 ORTHO05D008180 2.5e-96 355.9 252 100.0
AL1G43790 Arabidopsis lyrata HOM05D004468 ORTHO05D008180 2.5e-88 329.3 252 80.2
Carub.0001s2818 Capsella rubella HOM05D004468 ORTHO05D008180 1.9e-80 303.1 267 76.8
CARHR029490 Cardamine hirsuta HOM05D004468 ORTHO05D008180 9.7e-80 300.8 254 90.6
Sp1g25810 Schrenkiella parvula HOM05D004468 ORTHO05D008180 9.7e-80 300.8 252 69.8
Thhalv10009888m.g Eutrema salsugineum HOM05D004468 ORTHO05D008180 1.2e-77 293.9 252 65.9
BcaB03g13850 Brassica carinata HOM05D004468 ORTHO05D008180 2.0e-69 266.5 254 62.2
BcaB03g12186 Brassica carinata HOM05D004468 ORTHO05D008180 8.8e-65 251.1 260 68.1
BcaC01g00145 Brassica carinata HOM05D004468 ORTHO05D008180 1.5e-64 250.4 261 66.7
C03p76270 Brassica napus HOM05D004468 ORTHO05D008180 1.5e-64 250.4 260 67.3
BolC3t19884H Brassica oleracea HOM05D004468 ORTHO05D008180 1.5e-64 250.4 260 67.3
A08p24790 Brassica napus HOM05D004468 ORTHO05D008180 7.4e-64 248.1 261 65.9
BraA08t34433Z Brassica rapa HOM05D004468 ORTHO05D008180 7.4e-64 248.1 261 65.9
BcaC06g35475 Brassica carinata HOM05D004468 ORTHO05D008180 1.8e-62 243.4 254 65.0
BolC7t42051H Brassica oleracea HOM05D004468 ORTHO05D008180 1.8e-62 243.4 254 65.0
A07p10110 Brassica napus HOM05D004468 ORTHO05D008180 4.1e-62 242.3 254 75.6
C07p15630 Brassica napus HOM05D004468 ORTHO05D008180 9.1e-62 241.1 254 57.5
THA.LOC104820641 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 3.0e-49 199.5 248 47.6
BraA07t28804Z Brassica rapa HOM05D004468 ORTHO05D008180 1.5e-48 197.2 254 67.3
THA.LOC104812665 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 2.0e-48 196.8 244 49.6
C07p15610 Brassica napus HOM05D004468 ORTHO05D008180 3.6e-42 176.0 136 69.1
THA.LOC104814285 Tarenaya hassleriana HOM05D004468 ORTHO05D008180 2.9e-36 156.4 243 53.1
Thecc.06G154000 Theobroma cacao HOM05D004468 ORTHO05D008180 3.0e-33 146.4 251 38.6
BolC7t42047H Brassica oleracea HOM05D004468 ORTHO05D008180 5.2e-33 145.6 100 72.0
COL.COLO4_06070 Corchorus olitorius HOM05D004468 ORTHO05D008180 1.7e-31 140.6 249 37.8
MD05G1288800 Malus domestica HOM05D004468 ORTHO05D008180 3.2e-30 136.3 253 37.2
QL05p059278 Quercus lobata HOM05D004468 ORTHO05D008180 2.0e-29 133.7 244 39.3
Atru.chr10.1342 Acer truncatum HOM05D004468 ORTHO05D008180 3.5e-29 132.9 245 52.7
MD10G1264900 Malus domestica HOM05D004468 ORTHO05D008180 3.5e-29 132.9 253 36.8
Prupe.4G077100 Prunus persica HOM05D004468 ORTHO05D008180 1.0e-28 131.3 249 36.5
Manes.17G067600 Manihot esculenta HOM05D004468 ORTHO05D008180 1.3e-28 131.0 247 43.3
Manes.15G119000 Manihot esculenta HOM05D004468 ORTHO05D008180 1.7e-28 130.6 249 35.3
Duzib235G1094 Durio zibethinus HOM05D004468 ORTHO05D008180 2.3e-28 130.2 247 37.7
Gohir.A10G039100 Gossypium hirsutum HOM05D004468 ORTHO05D008180 1.9e-27 127.1 249 36.5
Gorai.011G042000 Gossypium raimondii HOM05D004468 ORTHO05D008180 1.9e-27 127.1 254 35.8
BcaC06g35479 Brassica carinata HOM05D000171 ORTHO05D008180 3.3e-27 126.3 78 76.9
Duzib192G0660 Durio zibethinus HOM05D004468 ORTHO05D008180 3.3e-27 126.3 247 36.4
Ciclev10016464m.g Citrus clementina HOM05D004468 ORTHO05D008180 5.6e-27 125.6 240 36.2
Gohir.D05G152600 Gossypium hirsutum HOM05D004468 ORTHO05D008180 5.6e-27 125.6 247 37.2
Sabra11G0068700 Salix brachista HOM05D004468 ORTHO05D008180 5.6e-27 125.6 245 40.4
Sabra11G0070800 Salix brachista HOM05D004468 ORTHO05D008180 5.6e-27 125.6 245 40.4
Potri.011G080000 Populus trichocarpa HOM05D004468 ORTHO05D008180 1.2e-26 124.4 245 35.1
Gorai.009G156700 Gossypium raimondii HOM05D004468 ORTHO05D008180 2.8e-26 123.2 247 36.0
Haze_05549 Corylus avellana HOM05D004468 ORTHO05D008180 3.6e-26 122.9 250 40.0
Gohir.A05G150000 Gossypium hirsutum HOM05D004468 ORTHO05D008180 3.6e-26 122.9 247 35.2
Cfa000973 Carpinus fangiana HOM05D004468 ORTHO05D008180 2.3e-25 120.2 250 40.8
Dinv05249 Davidia involucrata HOM05D004468 ORTHO05D008180 2.3e-25 120.2 243 35.8
CiPaw.09G126600 Carya illinoinensis HOM05D004468 ORTHO05D008180 4.0e-25 119.4 238 36.1
Duzib160G0871 Durio zibethinus HOM05D004468 ORTHO05D008180 6.8e-25 118.6 245 33.5
Dinv33636 Davidia involucrata HOM05D004468 ORTHO05D008180 1.2e-24 117.9 242 36.0
Phvul.002G194400 Phaseolus vulgaris HOM05D004468 ORTHO05D008180 5.8e-24 115.5 234 34.6
Dinv30712 Davidia involucrata HOM05D004468 ORTHO05D008180 7.5e-24 115.2 259 35.5
Lalb_Chr13g0291991 Lupinus albus HOM05D004468 ORTHO05D008180 9.8e-24 114.8 239 37.2
RhsimUnG0149400 Rhododendron simsii HOM05D004468 ORTHO05D008180 1.3e-23 114.4 251 43.0
CANSAT35G0919 Cannabis sativa HOM05D004468 ORTHO05D008180 2.2e-23 113.6 255 61.2
RcHm_v2.0_Chr5g0013411 Rosa chinensis HOM05D004468 ORTHO05D008180 2.2e-23 113.6 243 43.2
TWI53G1884 Tripterygium wilfordii HOM05D004468 ORTHO05D008180 2.2e-23 113.6 246 39.0
CiPaw.10G093500 Carya illinoinensis HOM05D004468 ORTHO05D008180 6.4e-23 112.1 236 38.1
Glyma.05G129400 Glycine max HOM05D004468 ORTHO05D008180 6.4e-23 112.1 238 34.5
MD05G1288300 Malus domestica HOM05D004468 ORTHO05D008180 8.3e-23 111.7 234 34.6
Aqoxy1G01779 Aquilegia oxysepala HOM05D004468 ORTHO05D008180 1.1e-22 111.3 211 36.0
VMungo0251G1661 Vigna mungo HOM05D004468 ORTHO05D008180 1.1e-22 111.3 236 41.5
MD05G1288000 Malus domestica HOM05D004468 ORTHO05D008180 2.4e-22 110.2 234 34.2
TAR629G0415 Trochodendron aralioides HOM05D004468 ORTHO05D008180 5.4e-22 109.0 219 46.6
CsaV3_6G051560 Cucumis sativus L. HOM05D004468 ORTHO05D008180 7.0e-22 108.6 238 36.1
Sc17g0005060 Simmondsia chinensis HOM05D004468 ORTHO05D008180 9.2e-22 108.2 224 37.1
Hund21515 Selenicereus undatus HOM05D004468 ORTHO05D008180 1.6e-21 107.5 237 33.3
vmacro10945 Vaccinium macrocarpon HOM05D004468 ORTHO05D008180 1.6e-21 107.5 251 34.7
Lj1P1184T76 Lonicera japonica HOM05D004468 ORTHO05D008180 2.0e-21 107.1 214 62.1
Medtr4g096660 Medicago truncatula HOM05D004468 ORTHO05D008180 4.6e-21 105.9 220 33.6
Glyma.08G084100 Glycine max HOM05D004468 ORTHO05D008180 6.0e-21 105.5 242 36.8
FAN25G3280 Fragaria x ananassa HOM05D004468 ORTHO05D008180 7.8e-21 105.1 247 34.8
Os01g0626900 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 7.8e-21 105.1 203 35.5
TPR.G4895 Trifolium pratense HOM05D004468 ORTHO05D008180 7.8e-21 105.1 241 31.5
FAN21G2255 Fragaria x ananassa HOM05D004468 ORTHO05D008180 1.3e-20 104.4 247 34.4
arahy.Tifrunner.gnm1.ann1.2E3FWC Arachis hypogaea HOM05D004468 ORTHO05D008180 2.3e-20 103.6 236 33.1
PGSC0003DMG400008295 Solanum tuberosum HOM05D004468 ORTHO05D008180 3.9e-20 102.8 217 37.8
Ca_18271_v3 Cicer arietinum L. HOM05D004468 ORTHO05D008180 6.6e-20 102.1 239 31.8
Sopen02g019960 Solanum pennellii HOM05D004468 ORTHO05D008180 1.5e-19 100.9 265 32.8
FvH4_3g06000 Fragaria vesca HOM05D004468 ORTHO05D008180 1.9e-19 100.5 247 33.6
Os03g0591300 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 1.9e-19 100.5 228 37.7
Actinidia07680 Actinidia chinensis HOM05D004468 ORTHO05D011136 3.3e-19 99.8 237 57.0
FAN16G0098 Fragaria x ananassa HOM05D004468 ORTHO05D008180 3.3e-19 99.8 247 33.6
Cc09_g09510 Coffea canephora HOM05D004468 ORTHO05D008180 4.3e-19 99.4 261 31.4
Solyc02g070880.1 Solanum lycopersicum HOM05D004468 ORTHO05D008180 4.3e-19 99.4 265 33.2
FAN11G2204 Fragaria x ananassa HOM05D004468 ORTHO05D008180 5.6e-19 99.0 247 32.4
MSTRG.13248 Avicennia marina HOM05D004468 ORTHO05D008180 7.3e-19 98.6 240 36.2
Sed0007839 Sechium edule HOM05D004468 ORTHO05D008180 7.3e-19 98.6 243 32.1
Os02g0315600 Oryza sativa ssp. japonica HOM05D004468 ORTHO05D008180 1.6e-18 97.4 211 34.1
Peaxi162Scf00291g00015 Petunia axillaris HOM05D004468 ORTHO05D008180 2.1e-18 97.1 208 34.6
Psat7g090880 Pisum sativum HOM05D004468 ORTHO05D008180 2.1e-18 97.1 227 30.8
Hma1.2p1_0164F.1_g073090 Hydrangea macrophylla HOM05D004468 ORTHO05D008180 3.6e-18 96.3 212 35.4
CAN.G257.6 Capsicum annuum HOM05D004468 ORTHO05D008180 4.7e-18 95.9 209 35.9
Lj4g0016525 Lotus japonicus HOM05D004468 ORTHO05D008180 4.7e-18 95.9 234 32.5
Actinidia39559 Actinidia chinensis HOM05D004468 ORTHO05D008180 1.1e-17 94.7 247 54.3
Nitab4.5_0001040g0150 Nicotiana tabacum HOM05D004468 ORTHO05D008180 1.4e-17 94.4 246 34.1
Sed0014650 Sechium edule HOM05D004468 ORTHO05D008180 1.4e-17 94.4 207 32.4
Zm00001eb384990 Zea mays HOM05D004468 ORTHO05D008180 5.2e-17 92.4 244 37.7
SalBow6G4733 Salvia bowleyana HOM05D004468 ORTHO05D008180 1.5e-16 90.9 223 30.0
Migut.H01376 Erythranthe guttata HOM05D004468 ORTHO05D008180 2.0e-16 90.5 247 30.8
SalBow7G0317 Salvia bowleyana HOM05D004468 ORTHO05D008180 3.4e-16 89.7 207 30.4
Oeu052384.1 Olea europaea HOM05D004468 ORTHO05D008180 5.8e-16 89.0 214 29.9
Nitab4.5_0001655g0240 Nicotiana tabacum HOM05D004468 ORTHO05D008180 6.4e-15 85.5 245 49.4
RhsimUnG0174800 Rhododendron simsii HOM05D004468 ORTHO05D008180 5.4e-14 82.4 133 42.1
MELO3C007151.2 Cucumis melo HOM05D004468 ORTHO05D008180 1.2e-13 81.3 239 58.2
PSO541G2725 Papaver somniferum HOM05D004468 ORTHO05D008180 4.6e-13 79.3 231 29.4
CDE02G0697 Ceratophyllum demersum HOM05D004468 ORTHO05D008180 1.0e-12 78.2 240 27.1
PSO675G1482 Papaver somniferum HOM05D004468 ORTHO05D008180 1.0e-12 78.2 210 31.0
MSTRG.14764 Avicennia marina HOM05D004468 ORTHO05D008180 2.3e-12 77.0 242 28.1
Dinv32278 Davidia involucrata HOM05D004468 ORTHO05D011136 2.5e-11 73.6 117 39.3
Lsat_1_v5_gn_1_96101 Lactuca sativa HOM05D004468 ORTHO05D008180 5.6e-11 72.4 204 39.7
Gohir.D10G039900 Gossypium hirsutum HOM05D004468 ORTHO05D008180 9.5e-11 71.6 252 27.4
Zm00001eb278170 Zea mays HOM05D004468 ORTHO05D008180 1.6e-10 70.9 211 46.0
Eucgr.D00317 Eucalyptus grandis HOM05D004468 ORTHO05D008180 2.8e-10 70.1 205 59.0
Oeu040960.2 Olea europaea HOM05D004468 ORTHO05D008180 3.6e-10 69.7 99 39.4
HanXRQChr04g0118301 Helianthus annuus HOM05D004468 ORTHO05D008180 8.1e-10 68.6 219 45.2
unitig_8.g4884 Utricularia gibba HOM05D004468 ORTHO05D008180 8.1e-10 68.6 210 26.2
Nn4g26508 Nelumbo nucifera HOM05D004468 ORTHO05D008180 1.4e-09 67.8 106 35.8
Lsat_1_v5_gn_7_32861 Lactuca sativa HOM05D004468 ORTHO05D008180 4.0e-09 66.2 206 37.9
Nn3g20652 Nelumbo nucifera HOM05D004468 ORTHO05D008180 2.6e-08 63.5 122 38.5
MD05G1288500 Malus domestica HOM05D004468 ORTHO05D008180 5.8e-08 62.4 41 68.3
ECA236G0629 Erigeron canadensis HOM05D004468 ORTHO05D011136 1.7e-07 60.8 45 68.9
Zm00001eb277350 Zea mays HOM05D004468 ORTHO05D008180 3.2e-06 56.6 201 46.8


User provided reference genes

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