Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 0.0e+00 2048.9 1076 100.0
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 0.0e+00 1916.0 1076 93.2
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 0.0e+00 1730.7 1077 83.9
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 0.0e+00 1716.4 1081 83.3
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 0.0e+00 1654.8 1079 82.6
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 0.0e+00 1588.5 1079 77.2
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 0.0e+00 1546.6 1079 75.7
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 0.0e+00 1536.2 1083 75.1
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 0.0e+00 1532.7 1079 75.4
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 0.0e+00 1415.2 1031 74.4
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 0.0e+00 1346.3 1079 71.6
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 0.0e+00 1243.4 769 85.8
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 4.1e-236 822.4 1130 45.0
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 3.4e-235 819.3 1196 43.7
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 6.3e-229 798.5 1141 44.8
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 8.2e-229 798.1 1228 42.6
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 6.1e-224 781.9 1196 42.1
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 2.3e-223 780.0 1137 42.8
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 1.3e-221 774.2 1137 42.7
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 1.7e-221 773.9 1173 41.8
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 2.5e-217 760.0 1250 40.9
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 4.2e-217 759.2 1215 40.9
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 1.6e-216 757.3 1367 39.2
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 1.4e-215 754.2 1287 39.3
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 1.5e-214 750.7 1247 40.4
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 7.5e-214 748.4 1304 40.2
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 1.1e-212 744.6 1329 39.3
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 9.1e-212 741.5 1113 41.9
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 1.2e-211 741.1 1264 39.5
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 2.9e-210 736.5 1332 39.2
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 1.1e-209 734.6 1308 38.6
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 4.9e-205 719.2 1288 39.8
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 8.9e-199 698.4 1214 39.0
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 1.7e-197 694.1 1149 41.3
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 4.1e-196 689.5 1303 38.0
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 3.5e-195 686.4 1232 39.4
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 1.0e-194 684.9 1228 39.3
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 1.0e-194 684.9 1330 37.1
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 8.9e-191 671.8 1254 38.3
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 7.5e-190 668.7 1143 40.3
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 4.1e-188 662.9 1339 37.4
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 4.1e-188 662.9 1298 37.4
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 7.0e-188 662.1 1403 34.9
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 1.6e-187 661.0 1338 36.5
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 2.1e-187 660.6 1267 38.5
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 3.9e-186 656.4 1306 36.7
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 1.2e-184 651.4 1331 36.3
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 1.6e-184 651.0 1317 35.8
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 1.4e-180 637.9 1335 36.0
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 1.9e-180 637.5 1337 35.5
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 2.7e-179 633.6 1292 36.8
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 1.5e-177 627.9 1389 34.2
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 9.5e-177 625.2 1378 33.9
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 2.1e-176 624.0 1287 35.2
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 2.1e-176 624.0 1318 36.5
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 6.2e-176 622.5 1313 34.0
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 5.8e-174 615.9 1353 34.1
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 1.0e-170 605.1 1266 35.2
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 3.3e-169 600.1 1380 34.3
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 2.1e-168 597.4 1293 35.2
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 4.7e-168 596.3 1299 34.9
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 6.9e-167 592.4 1086 39.3
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 9.9e-166 588.6 1084 37.1
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 1.3e-165 588.2 1189 35.5
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 1.9e-164 584.3 1100 38.2
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 4.2e-164 583.2 1300 34.3
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 1.1e-161 575.1 1374 34.8
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 1.4e-159 568.2 915 40.0
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 3.4e-158 563.5 824 42.2
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 4.2e-156 556.6 1081 36.1
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 2.1e-155 554.3 770 43.1
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 3.5e-155 553.5 1255 33.1
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 1.3e-154 551.6 1243 34.8
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 3.9e-154 550.1 750 44.1
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 1.1e-151 542.0 1243 35.3
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 2.7e-147 527.3 1212 33.0
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 6.0e-147 526.2 1191 34.4
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 5.6e-145 519.6 1216 34.8
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 2.8e-144 517.3 1115 34.2
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 7.1e-140 502.7 1254 33.3
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 1.6e-139 501.5 1351 31.7
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 6.0e-139 499.6 1166 35.0
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 7.9e-139 499.2 1245 32.3
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 4.5e-134 483.4 1069 32.6
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 7.9e-131 472.6 1264 31.3
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 6.7e-130 469.5 1027 33.5
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 1.4e-127 461.8 1218 31.3
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 1.0e-125 455.7 781 38.3
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 9.5e-84 316.2 821 30.0
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 8.0e-83 313.2 1044 27.9
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 1.8e-82 312.0 550 37.5
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 3.5e-70 271.2 629 33.5
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 1.2e-67 262.7 766 29.6
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 6.8e-66 256.9 532 42.3
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 2.2e-64 251.9 291 49.1
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 2.5e-60 238.4 334 48.8
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 4.7e-59 234.2 347 40.9
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 3.0e-53 214.9 276 43.1
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.1e-50 206.5 340 38.5
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 1.8e-50 205.7 265 50.2
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 1.5e-49 202.6 152 61.2
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 3.8e-48 198.0 671 30.6
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 3.3e-44 184.9 165 63.6
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 1.7e-40 172.6 88 90.9
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 6.4e-40 170.6 343 39.9
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 1.2e-38 166.4 675 25.9
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 2.7e-38 165.2 402 32.6
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 2.5e-36 158.7 823 22.5
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 1.3e-35 156.4 102 66.7
AL4G14580 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 5.3e-34 151.0 93 88.2
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 1.7e-32 146.0 84 85.7
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 1.6e-30 139.4 200 43.0
AL4G14240 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 8.7e-29 133.7 82 87.8
AL5G19250 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 3.3e-28 131.7 85 83.5
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.3e-27 129.8 732 23.8
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 2.1e-27 129.0 153 44.4
AL2G19550 Arabidopsis lyrata HOM05D031540 ORTHO05D014741 3.7e-27 128.3 149 55.7
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 9.0e-26 123.6 396 33.8
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 3.4e-25 121.7 265 35.8
BcaB03g13969 Brassica carinata HOM05D001879 ORTHO05D007648 1.1e-23 116.7 187 46.5
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 3.1e-18 98.6 132 43.9
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 1.8e-13 82.8 210 31.0
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 2.5e-12 79.0 146 34.2
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 3.3e-12 78.6 61 57.4
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 1.7e-11 76.3 77 42.9
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 2.8e-11 75.5 221 31.2
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 3.7e-11 75.1 77 41.6
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 2.6e-09 68.9 54 51.9
Actinidia22689 Actinidia chinensis HOM05D001879 ORTHO05D007648 8.5e-08 63.9 71 54.9
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 2.1e-06 59.3 113 38.1
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 2.1e-06 59.3 74 35.1
AL4G42150 Arabidopsis lyrata HOM05D002300 ORTHO05D002340 4.7e-06 58.2 110 30.9
AT2G43410 Arabidopsis thaliana HOM05D002300 ORTHO05D002340 4.7e-06 58.2 110 30.9
Nitab4.5_0006064g0040 Nicotiana tabacum HOM05D002300 ORTHO05D002340 7.9e-06 57.4 165 25.5


User provided reference genes

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