Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 3.8e-160 568.2 297 100.0
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 4.1e-154 548.1 292 97.6
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 1.3e-147 526.6 296 93.2
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 4.0e-141 505.0 293 90.8
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 7.5e-140 500.7 326 84.0
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 7.5e-140 500.7 303 89.4
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 1.3e-139 500.0 303 89.1
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 2.8e-139 498.8 303 88.4
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 1.4e-138 496.5 303 88.1
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 4.1e-138 495.0 299 88.6
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 1.7e-136 489.6 301 87.4
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 4.0e-133 478.4 306 85.6
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 1.6e-129 466.5 308 82.5
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 2.3e-120 436.0 245 92.7
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 2.6e-116 422.5 308 77.3
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 5.6e-111 404.8 214 97.7
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 4.4e-108 395.2 212 96.2
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 6.0e-105 384.8 302 73.2
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 2.8e-102 375.9 307 72.3
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 5.1e-96 355.1 337 62.0
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 5.6e-95 351.7 267 73.0
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 5.6e-95 351.7 265 72.5
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 7.3e-95 351.3 262 74.4
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 4.8e-94 348.6 263 73.4
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 1.1e-93 347.4 329 61.4
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 9.0e-93 344.4 265 71.7
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 9.0e-93 344.4 265 71.7
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 1.2e-92 344.0 229 81.2
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 1.5e-92 343.6 232 79.7
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 2.6e-92 342.8 229 81.2
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 5.8e-92 341.7 229 80.8
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 2.2e-91 339.7 222 78.8
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 2.9e-91 339.3 230 80.4
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 4.9e-91 338.6 311 62.7
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 8.4e-91 337.8 221 81.0
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 1.1e-90 337.4 203 82.8
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 1.4e-90 337.0 229 77.3
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 2.4e-90 336.3 264 69.7
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 2.4e-90 336.3 264 69.7
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 3.2e-90 335.9 222 77.9
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 3.2e-90 335.9 230 78.3
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 4.2e-90 335.5 273 68.5
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 5.4e-90 335.1 261 69.7
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 5.4e-90 335.1 266 70.3
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 5.4e-90 335.1 227 78.4
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 5.4e-90 335.1 296 66.6
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 9.3e-90 334.3 229 77.7
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 9.3e-90 334.3 313 61.0
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 1.2e-89 334.0 220 78.6
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 1.2e-89 334.0 220 80.5
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 2.7e-89 332.8 229 78.2
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 4.6e-89 332.0 312 64.4
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 6.0e-89 331.6 222 77.0
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 1.0e-88 330.9 253 70.4
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 1.3e-88 330.5 221 78.7
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 1.3e-88 330.5 220 78.2
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 1.3e-88 330.5 277 67.5
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 1.8e-88 330.1 206 82.5
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 1.8e-88 330.1 223 78.0
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 1.8e-88 330.1 204 82.8
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 2.3e-88 329.7 301 61.5
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 5.1e-88 328.6 220 78.2
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 5.1e-88 328.6 220 78.2
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 6.7e-88 328.2 260 69.2
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 6.7e-88 328.2 260 69.2
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 8.7e-88 327.8 221 77.8
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 8.7e-88 327.8 269 69.1
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 1.5e-87 327.0 268 66.8
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 1.9e-87 326.6 232 75.0
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 1.9e-87 326.6 222 78.4
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 3.3e-87 325.9 234 75.6
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 4.3e-87 325.5 230 74.8
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 5.6e-87 325.1 206 79.1
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 7.4e-87 324.7 260 67.7
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 7.4e-87 324.7 260 68.1
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 9.6e-87 324.3 256 71.1
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 1.6e-86 323.6 220 77.7
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.6e-86 323.6 221 77.4
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 2.1e-86 323.2 313 62.3
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 4.8e-86 322.0 206 81.6
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 4.8e-86 322.0 221 76.9
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 4.8e-86 322.0 193 82.9
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 6.2e-86 321.6 221 76.5
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 1.4e-85 320.5 204 78.9
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 1.8e-85 320.1 290 63.8
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 3.1e-85 319.3 209 78.9
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 4.0e-85 318.9 221 75.1
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 4.0e-85 318.9 222 74.3
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 5.3e-85 318.5 221 75.1
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 6.9e-85 318.2 229 75.5
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 9.0e-85 317.8 311 63.3
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 1.2e-84 317.4 220 75.0
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 1.2e-84 317.4 206 79.6
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 4.5e-84 315.5 206 79.6
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 7.6e-84 314.7 206 78.6
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 9.9e-84 314.3 222 73.0
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 1.3e-83 313.9 193 82.4
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 4.9e-83 312.0 213 75.1
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 1.1e-82 310.8 183 85.2
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 1.9e-82 310.1 237 70.5
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 2.7e-81 306.2 204 75.0
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 3.5e-81 305.8 206 76.7
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 7.9e-81 304.7 206 77.7
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 3.1e-77 292.7 289 58.8
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 3.8e-75 285.8 166 87.3
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 1.3e-70 270.8 206 72.3
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 4.8e-70 268.9 223 66.8
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 4.1e-69 265.8 206 70.9
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 4.5e-68 262.3 211 64.5
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 7.4e-63 245.0 211 59.7
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 6.3e-62 241.9 222 56.8
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 1.9e-58 230.3 144 79.2
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 2.9e-51 206.5 162 61.7
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 3.2e-50 203.0 210 51.9
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 4.2e-50 202.6 208 52.4
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 5.7e-47 192.2 225 45.8
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 7.4e-47 191.8 178 52.8
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 7.0e-45 185.3 177 53.1
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 6.1e-41 172.2 112 82.1
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 1.1e-37 161.4 144 63.2
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 2.3e-32 143.7 159 55.3
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 8.0e-25 118.6 149 38.3
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 1.1e-21 108.2 65 83.1
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 3.6e-17 93.2 53 86.8
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 1.4e-16 91.3 76 65.8
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 1.7e-14 84.3 49 89.8


User provided reference genes

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