Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G17680 Arabidopsis thaliana HOM05D003469 ORTHO05D004084 0.0e+00 1728.0 897 100.0
AL1G30030 Arabidopsis lyrata HOM05D003469 ORTHO05D004084 0.0e+00 1600.5 906 93.4
Carub.0001s1741 Capsella rubella HOM05D003469 ORTHO05D004084 0.0e+00 1556.6 898 90.5
Thhalv10006758m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 0.0e+00 1468.4 902 85.3
A06p13570 Brassica napus HOM05D003469 ORTHO05D004084 0.0e+00 1367.1 909 79.9
BraA06t24509Z Brassica rapa HOM05D003469 ORTHO05D004084 0.0e+00 1367.1 909 79.9
BcaC05g25689 Brassica carinata HOM05D003469 ORTHO05D004084 0.0e+00 1363.2 908 79.6
C05p16090 Brassica napus HOM05D003469 ORTHO05D004084 0.0e+00 1361.3 908 79.5
BolC5t30309H Brassica oleracea HOM05D003469 ORTHO05D004084 0.0e+00 1360.9 908 79.4
BcaB07g34024 Brassica carinata HOM05D003469 ORTHO05D004084 0.0e+00 1355.9 908 80.0
BolC4t22588H Brassica oleracea HOM05D003469 ORTHO05D004084 0.0e+00 1333.5 900 78.7
BcaC02g11929 Brassica carinata HOM05D003469 ORTHO05D004084 0.0e+00 1323.9 900 78.4
Aa31LG7G2510 Aethionema arabicum HOM05D003469 ORTHO05D004084 0.0e+00 1291.6 944 73.7
C04p09790 Brassica napus HOM05D003469 ORTHO05D004084 0.0e+00 1258.0 921 74.3
THA.LOC104807542 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 0.0e+00 1115.5 913 67.0
THA.LOC104800339 Tarenaya hassleriana HOM05D003469 ORTHO05D004084 2.1e-270 936.0 876 60.5
Sp4g05240 Schrenkiella parvula HOM05D000751 ORTHO05D005618 2.2e-259 899.4 597 78.9
CARHR018280 Cardamine hirsuta HOM05D003469 ORTHO05D004084 1.4e-229 800.4 558 79.7
Sp1g15780 Schrenkiella parvula HOM05D003469 ORTHO05D004084 2.4e-221 773.1 403 94.3
TAR628G0771 Trochodendron aralioides HOM05D003469 ORTHO05D004084 3.8e-211 739.2 849 48.9
C04p00480 Brassica napus HOM05D003469 ORTHO05D004084 8.4e-211 738.0 761 55.5
CiPaw.03G010300 Carya illinoinensis HOM05D003469 ORTHO05D004084 7.1e-210 734.9 863 48.6
Thecc.08G168800 Theobroma cacao HOM05D003469 ORTHO05D004084 2.1e-209 733.4 853 48.7
TWI38G1177 Tripterygium wilfordii HOM05D003469 ORTHO05D004084 6.1e-201 705.3 868 46.8
Glyma.12G027700 Glycine max HOM05D003469 ORTHO05D004084 4.3e-199 699.1 851 48.4
Actinidia21939 Actinidia chinensis HOM05D003469 ORTHO05D004084 2.8e-198 696.4 844 46.3
Phvul.011G031000 Phaseolus vulgaris HOM05D003469 ORTHO05D004084 1.8e-197 693.7 850 47.1
Glyma.11G102000 Glycine max HOM05D003469 ORTHO05D004084 9.0e-197 691.4 851 47.4
Lalb_Chr07g0195581 Lupinus albus HOM05D003469 ORTHO05D004084 4.5e-196 689.1 866 45.7
arahy.Tifrunner.gnm1.ann1.M9HC5A Arachis hypogaea HOM05D003469 ORTHO05D004084 5.9e-196 688.7 871 45.5
Solyc06g063420.4 Solanum lycopersicum HOM05D003469 ORTHO05D004084 5.9e-196 688.7 850 44.8
GSVIVG01036699001 Vitis vinifera HOM05D003469 ORTHO05D004084 1.7e-195 687.2 899 44.0
Sopen06g022880 Solanum pennellii HOM05D003469 ORTHO05D004084 2.5e-194 683.3 850 44.7
PSO170G4646 Papaver somniferum HOM05D003469 ORTHO05D004084 7.2e-194 681.8 853 46.2
VMungo1127G1455 Vigna mungo HOM05D003469 ORTHO05D004084 7.2e-194 681.8 854 47.0
Eucgr.G01221 Eucalyptus grandis HOM05D003469 ORTHO05D004084 1.8e-192 677.2 872 45.4
Gorai.008G247300 Gossypium raimondii HOM05D003469 ORTHO05D004084 1.8e-192 677.2 852 45.7
Dinv28114 Davidia involucrata HOM05D003469 ORTHO05D004084 3.3e-191 672.9 853 45.1
Gohir.A12G230000 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.1e-189 667.9 850 45.6
ClCG07G013810 Citrullus lanatus HOM05D003469 ORTHO05D004084 1.4e-189 667.5 854 44.5
arahy.Tifrunner.gnm1.ann1.046I3L Arachis hypogaea HOM05D003469 ORTHO05D004084 2.0e-188 663.7 864 44.6
Nn5g27173 Nelumbo nucifera HOM05D003469 ORTHO05D004084 3.4e-188 662.9 851 44.3
CsaV3_3G043790 Cucumis sativus L. HOM05D003469 ORTHO05D004084 1.9e-186 657.1 854 44.1
MELO3C013095.2 Cucumis melo HOM05D003469 ORTHO05D004084 7.2e-186 655.2 854 44.0
Gohir.D12G231100 Gossypium hirsutum HOM05D003469 ORTHO05D004084 1.6e-185 654.1 852 44.8
Sed0013857 Sechium edule HOM05D003469 ORTHO05D004084 2.7e-185 653.3 852 43.8
Aqoxy6G00028 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 4.7e-185 652.5 853 44.0
Lj1g0005967 Lotus japonicus HOM05D003469 ORTHO05D004084 1.5e-183 647.5 842 45.2
Cc00_g11470 Coffea canephora HOM05D003469 ORTHO05D004084 1.7e-182 644.0 860 43.0
MBI03_g18641_MAGBIO Magnolia biondii HOM05D003469 ORTHO05D004084 2.2e-182 643.7 848 43.4
FAN14G5376 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.4e-181 641.0 846 44.4
MSTRG.1003 Avicennia marina HOM05D003469 ORTHO05D004084 1.8e-181 640.6 843 43.5
Rhsim12G0000800 Rhododendron simsii HOM05D003469 ORTHO05D004084 1.8e-181 640.6 762 47.0
FvH4_6g37900 Fragaria vesca HOM05D003469 ORTHO05D004084 4.1e-181 639.4 846 44.3
Manes.06G016500 Manihot esculenta HOM05D003469 ORTHO05D004084 3.5e-180 636.3 817 45.3
Duzib235G0325 Durio zibethinus HOM05D003469 ORTHO05D004084 7.7e-180 635.2 846 44.4
FAN02G0848 Fragaria x ananassa HOM05D003469 ORTHO05D004084 3.8e-179 632.9 846 44.0
Medtr4g079390 Medicago truncatula HOM05D003469 ORTHO05D004084 2.1e-177 627.1 847 43.8
RcHm_v2.0_Chr2g0151101 Rosa chinensis HOM05D003469 ORTHO05D004084 2.1e-177 627.1 836 44.1
QL09p054764 Quercus lobata HOM05D003469 ORTHO05D004084 2.7e-177 626.7 772 46.8
FAN09G4617 Fragaria x ananassa HOM05D003469 ORTHO05D004084 5.2e-176 622.5 846 43.4
CANSAT78G0348 Cannabis sativa HOM05D003469 ORTHO05D004084 8.8e-176 621.7 855 43.0
Atru.chr9.1130 Acer truncatum HOM05D003469 ORTHO05D004084 2.6e-175 620.2 846 43.1
Nitab4.5_0003757g0100 Nicotiana tabacum HOM05D003469 ORTHO05D004084 4.4e-175 619.4 858 42.5
Migut.C00329 Erythranthe guttata HOM05D003469 ORTHO05D004084 7.4e-175 618.6 843 42.5
TPR.G38733 Trifolium pratense HOM05D003469 ORTHO05D004084 2.2e-174 617.1 858 42.7
Sc09g0010840 Simmondsia chinensis HOM05D003469 ORTHO05D004084 3.7e-174 616.3 857 43.6
RcHm_v2.0_Chr2g0151071 Rosa chinensis HOM05D003469 ORTHO05D004084 1.1e-173 614.8 846 43.3
ECA232G2309 Erigeron canadensis HOM05D003469 ORTHO05D004084 1.4e-173 614.4 848 41.9
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 7.0e-173 612.1 831 43.0
Medtr4g074860 Medicago truncatula HOM05D003469 ORTHO05D004084 9.1e-173 611.7 869 42.6
AUR62008300 Chenopodium quinoa HOM05D003469 ORTHO05D004084 1.0e-171 608.2 848 42.1
EL10Ac5g10861 Beta vulgaris HOM05D003469 ORTHO05D004084 6.5e-171 605.5 883 42.1
Peaxi162Scf00818g00323 Petunia axillaris HOM05D003469 ORTHO05D004084 1.9e-170 604.0 830 41.9
Prupe.8G070000 Prunus persica HOM05D003469 ORTHO05D004084 1.9e-170 604.0 845 42.6
Lj9C173G0 Lonicera japonica HOM05D003469 ORTHO05D004084 2.1e-169 600.5 849 43.2
Potri.013G128900 Populus trichocarpa HOM05D003469 ORTHO05D004084 4.7e-169 599.4 850 43.3
CSS0010807 Camellia sinensis var. sinensis HOM05D003469 ORTHO05D004084 1.3e-166 591.3 848 41.9
SalBow7G2370 Salvia bowleyana HOM05D003469 ORTHO05D004084 2.8e-166 590.1 897 41.6
MD09G1155000 Malus domestica HOM05D003469 ORTHO05D004084 4.8e-166 589.3 846 41.4
Os11g0266800 Oryza sativa ssp. japonica HOM05D003469 ORTHO05D004084 1.6e-164 584.3 842 39.9
CAN.G14.42 Capsicum annuum HOM05D003469 ORTHO05D004084 2.0e-164 583.9 856 41.2
Ciclev10026956m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.0e-164 583.9 835 42.3
RcHm_v2.0_Chr6g0293861 Rosa chinensis HOM05D003469 ORTHO05D004084 2.7e-164 583.6 864 41.4
Lj9C162G1 Lonicera japonica HOM05D003469 ORTHO05D004084 4.5e-164 582.8 890 40.7
AUR62031062 Chenopodium quinoa HOM05D003469 ORTHO05D004084 7.7e-164 582.0 847 41.4
HanXRQChr09g0266911 Helianthus annuus HOM05D003469 ORTHO05D004084 2.2e-163 580.5 852 40.5
TPR.G32330 Trifolium pratense HOM05D003469 ORTHO05D004084 5.0e-163 579.3 822 43.1
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.9e-162 577.4 865 41.5
Aqoxy4G02849 Aquilegia oxysepala HOM05D003469 ORTHO05D004084 5.5e-162 575.9 847 41.6
unitig_26.g9845 Utricularia gibba HOM05D003469 ORTHO05D004084 1.8e-160 570.9 874 40.3
DCAR_001477 Daucus carota HOM05D003469 ORTHO05D004084 5.2e-160 569.3 855 41.4
FAN15G0576 Fragaria x ananassa HOM05D003469 ORTHO05D004084 6.8e-160 568.9 862 40.7
HPP92_015320 Vanilla planifolia HOM05D003469 ORTHO05D004084 1.6e-156 557.8 836 40.7
FAN27G0386 Fragaria x ananassa HOM05D003469 ORTHO05D004084 1.7e-150 537.7 857 39.8
Nitab4.5_0005224g0040 Nicotiana tabacum HOM05D003469 ORTHO05D004084 3.2e-149 533.5 863 37.3
Nitab4.5_0002354g0130 Nicotiana tabacum HOM05D003469 ORTHO05D004084 7.0e-149 532.3 854 39.5
Nitab4.5_0002906g0070 Nicotiana tabacum HOM05D003469 ORTHO05D004084 5.0e-147 526.2 854 37.1
Lsat_1_v5_gn_4_131841 Lactuca sativa HOM05D003469 ORTHO05D004084 3.3e-146 523.5 857 38.2
SMO164G0159 Selaginella moellendorffii HOM05D003469 ORTHO05D004084 5.6e-146 522.7 867 38.1
SGA_v2.0_scaffold8G04312 Striga asiatica HOM05D003469 ORTHO05D004084 2.1e-145 520.8 925 37.7
Dinv15687 Davidia involucrata HOM05D003469 ORTHO05D004084 1.2e-143 515.0 849 40.0
FvH4_2g25610 Fragaria vesca HOM05D003469 ORTHO05D004084 5.4e-141 506.1 865 38.2
Ciclev10019721m.g Citrus clementina HOM05D003469 ORTHO05D004084 2.5e-138 497.3 522 52.1
Zm00001eb171180 Zea mays HOM05D003469 ORTHO05D004084 1.6e-137 494.6 730 40.7
AUR62039415 Chenopodium quinoa HOM05D003469 ORTHO05D004084 2.3e-136 490.7 677 42.4
Peaxi162Scf00015g00107 Petunia axillaris HOM05D003469 ORTHO05D004084 2.6e-135 487.3 848 35.8
Mapoly0024s0108 Marchantia polymorpha HOM05D003469 ORTHO05D004084 1.3e-126 458.4 801 35.1
Lj9A422T76 Lonicera japonica HOM05D003469 ORTHO05D004084 3.6e-121 440.3 756 37.7
vmacro00914 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 6.8e-120 436.0 1312 27.8
Haze_14033 Corylus avellana HOM05D003469 ORTHO05D004084 4.2e-117 426.8 562 45.0
TAR633G1289 Trochodendron aralioides HOM05D003469 ORTHO05D004084 8.1e-113 412.5 410 54.1
C04p00500 Brassica napus HOM05D003469 ORTHO05D004084 1.2e-111 408.7 489 50.9
Ca_19034_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 8.4e-110 402.5 282 67.4
CDE05G0531 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.4e-109 401.7 465 47.5
Pp3c8_10360 Physcomitrium patens HOM05D003469 ORTHO05D004084 8.7e-107 392.5 882 33.0
PGSC0003DMG400033134 Solanum tuberosum HOM05D003469 ORTHO05D004084 9.0e-104 382.5 283 63.3
Pp3c8_10366 Physcomitrium patens HOM05D003469 ORTHO05D004084 3.4e-103 380.6 856 32.9
AagrBONN_evm.TU.Sc2ySwM_362.2764 Anthoceros agrestis HOM05D003469 ORTHO05D004084 9.9e-103 379.0 910 31.1
Ah.15g095790 Amaranthus hybridus HOM05D003469 ORTHO05D004084 8.4e-102 375.9 1340 25.9
MD17G1141100 Malus domestica HOM05D003469 ORTHO05D004084 6.9e-96 356.3 285 62.1
ATR1089G047 Amborella trichopoda HOM05D003469 ORTHO05D004084 1.3e-91 342.0 845 31.2
Oeu019664.1 Olea europaea HOM05D003469 ORTHO05D004084 2.6e-87 327.8 363 46.3
SHI03012 Sapria himalayana HOM05D003469 ORTHO05D004084 3.4e-87 327.4 271 59.8
BcaC02g12573 Brassica carinata HOM05D003469 ORTHO05D004084 1.6e-84 318.5 240 69.6
EL10Ac5g10434 Beta vulgaris HOM05D003469 ORTHO05D004084 3.3e-74 284.3 636 31.9
TAR633G1719 Trochodendron aralioides HOM05D003469 ORTHO05D004084 5.5e-69 266.9 392 40.3
FvH4_6g38050 Fragaria vesca HOM05D003469 ORTHO05D004084 1.8e-67 261.9 783 30.0
Cpa.g.sc21.245 Carica papaya HOM05D003469 ORTHO05D004084 4.4e-66 257.3 339 42.2
FAN20G2279 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.4e-64 251.5 470 34.3
Ca_16139_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 5.3e-64 250.4 321 42.1
Thhalv10002713m.g Eutrema salsugineum HOM05D003469 ORTHO05D004084 5.3e-64 250.4 139 88.5
HanXRQChr13g0406831 Helianthus annuus HOM05D003469 ORTHO05D004084 2.6e-63 248.1 195 59.0
FvH4_6g38030 Fragaria vesca HOM05D003469 ORTHO05D004084 6.5e-62 243.4 386 38.3
SEGI_08666 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 5.5e-61 240.4 178 64.6
CBR_g36749 Chara braunii HOM05D003469 ORTHO05D004084 1.6e-60 238.8 1088 22.8
MD17G1141000 Malus domestica HOM05D003469 ORTHO05D004084 4.8e-57 227.3 383 33.7
Potri.013G129500 Populus trichocarpa HOM05D003469 ORTHO05D000003 3.5e-55 221.1 380 38.7
COL.COLO4_25121 Corchorus olitorius HOM05D003469 ORTHO05D004084 2.9e-54 218.0 358 38.5
AUR62000094 Chenopodium quinoa HOM05D003469 ORTHO05D004084 3.1e-48 198.0 452 31.0
BcaC02g12574 Brassica carinata HOM05D003469 ORTHO05D004084 2.1e-44 185.3 100 90.0
SHI03015 Sapria himalayana HOM05D003469 ORTHO05D004084 4.5e-39 167.5 251 38.2
CDE05G3544 Ceratophyllum demersum HOM05D003469 ORTHO05D004084 1.5e-37 162.5 420 31.4
Aa31LG2G17580 Aethionema arabicum HOM05D003469 ORTHO05D004084 3.4e-34 151.4 81 87.7
COL.COLO4_25120 Corchorus olitorius HOM05D003469 ORTHO05D004084 7.0e-32 143.7 443 29.8
Actinidia02459 Actinidia chinensis HOM05D003469 ORTHO05D004084 5.9e-31 140.6 120 56.7
vmacro23125 Vaccinium macrocarpon HOM05D003469 ORTHO05D004084 1.7e-30 139.0 406 26.8
BcaB02g08777 Brassica carinata HOM05D003469 ORTHO05D004084 7.3e-29 133.7 235 46.4
ECA232G2749 Erigeron canadensis HOM05D001807 ORTHO05D002044 9.5e-29 133.3 88 67.0
Cpa.g.sc21.244 Carica papaya HOM05D003469 ORTHO05D004084 8.9e-27 126.7 89 70.8
ATR0002G001 Amborella trichopoda HOM05D003469 ORTHO05D004084 9.8e-26 123.2 84 63.1
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 2.2e-25 122.1 80 73.8
Medtr4g074690 Medicago truncatula HOM05D003469 ORTHO05D004084 2.9e-25 121.7 253 32.8
SEGI_05114 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 2.4e-24 118.6 95 53.7
Ca_16140_v3 Cicer arietinum L. HOM05D003469 ORTHO05D004084 7.0e-24 117.1 160 39.4
Haze_14034 Corylus avellana HOM05D003469 ORTHO05D004084 9.2e-24 116.7 127 44.9
Psat0s3379g0040 Pisum sativum HOM05D003469 ORTHO05D004084 1.1e-21 109.8 108 49.1
Sp4g05220 Schrenkiella parvula HOM05D003469 ORTHO05D004084 3.1e-19 101.7 53 86.8
Aa31LG2G17590 Aethionema arabicum HOM05D003469 ORTHO05D004084 4.4e-18 97.8 55 83.6
Oeu035042.1 Olea europaea HOM05D003469 ORTHO05D004084 9.8e-18 96.7 248 31.0
QL09p054785 Quercus lobata HOM05D003469 ORTHO05D004084 9.8e-18 96.7 152 41.4
Glyma.07G124800 Glycine max HOM05D003469 ORTHO05D004084 2.7e-15 88.6 157 34.4
Ciclev10020572m.g Citrus clementina HOM05D003469 ORTHO05D004084 1.3e-14 86.3 304 26.3
Sabra13G0107500 Salix brachista HOM05D000001 ORTHO05D000003 3.9e-14 84.7 157 36.3
SEGI_39938 Sequoiadendron giganteum HOM05D003469 ORTHO05D004084 6.6e-14 84.0 142 34.5
SHI03013 Sapria himalayana HOM05D003469 ORTHO05D004084 8.6e-14 83.6 91 42.9
Oeu026515.1 Olea europaea HOM05D003469 ORTHO05D004084 8.1e-12 77.0 93 41.9
Lsat_1_v5_gn_0_35341 Lactuca sativa HOM05D003469 ORTHO05D004084 6.8e-11 73.9 139 33.1
Cpa.g.sc21.247 Carica papaya HOM05D003469 ORTHO05D004084 9.9e-10 70.1 100 44.0
PRCOL_00004204 Prasinoderma coloniale HOM05D003469 ORTHO05D004084 1.1e-08 66.6 194 27.8
Haze_14035 Corylus avellana HOM05D003469 ORTHO05D004084 3.2e-08 65.1 88 48.9
Psat0s2166g0160 Pisum sativum HOM05D003469 ORTHO05D004084 2.1e-07 62.4 84 40.5
FAN20G1461 Fragaria x ananassa HOM05D003469 ORTHO05D004084 2.3e-06 58.9 112 34.8


User provided reference genes

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