Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G12250 Arabidopsis thaliana HOM05D007062 ORTHO05D008941 8.5e-109 397.5 281 100.0
Carub.0001s1193 Capsella rubella HOM05D007062 ORTHO05D008941 8.2e-104 380.9 281 96.8
AL1G23540 Arabidopsis lyrata HOM05D007062 ORTHO05D008941 1.4e-103 380.2 281 96.4
Thhalv10008422m.g Eutrema salsugineum HOM05D007062 ORTHO05D008941 2.8e-96 355.9 281 91.8
Sp1g10870 Schrenkiella parvula HOM05D007062 ORTHO05D008941 2.5e-92 342.8 281 90.7
Aa31LG1G2430 Aethionema arabicum HOM05D007062 ORTHO05D008941 2.3e-90 336.3 289 77.2
BcaC07g41714 Brassica carinata HOM05D007062 ORTHO05D008941 1.4e-87 327.0 281 87.5
A09p63980 Brassica napus HOM05D007062 ORTHO05D008941 1.4e-87 327.0 281 87.5
BolC8t52291H Brassica oleracea HOM05D007062 ORTHO05D008941 1.8e-87 326.6 281 87.2
BraA09t41747Z Brassica rapa HOM05D007062 ORTHO05D008941 1.8e-87 326.6 281 87.5
BcaC07g42568 Brassica carinata HOM05D007062 ORTHO05D008941 4.1e-87 325.5 281 87.5
C08p47500 Brassica napus HOM05D007062 ORTHO05D008941 1.2e-86 323.9 281 87.2
THA.LOC104818475 Tarenaya hassleriana HOM05D007062 ORTHO05D008941 9.4e-76 287.7 287 78.0
Manes.01G076100 Manihot esculenta HOM05D007062 ORTHO05D008941 7.0e-63 245.0 284 70.4
Nitab4.5_0000993g0090 Nicotiana tabacum HOM05D007062 ORTHO05D008941 3.5e-62 242.7 284 73.9
Sopen08g027570 Solanum pennellii HOM05D007062 ORTHO05D008941 1.3e-61 240.7 281 73.0
Phvul.002G061100 Phaseolus vulgaris HOM05D007062 ORTHO05D008941 2.3e-61 240.0 284 71.5
Solyc08g079110.4 Solanum lycopersicum HOM05D007062 ORTHO05D008941 2.3e-61 240.0 281 73.0
PGSC0003DMG400004788 Solanum tuberosum HOM05D007062 ORTHO05D008941 5.0e-61 238.8 281 70.8
Nitab4.5_0005649g0010 Nicotiana tabacum HOM05D007062 ORTHO05D008941 6.6e-61 238.4 284 73.2
TAR375G0275 Trochodendron aralioides HOM05D007062 ORTHO05D008941 8.6e-61 238.0 281 71.5
CAN.G1217.21 Capsicum annuum HOM05D007062 ORTHO05D008941 5.6e-60 235.3 281 70.5
VMungo1215G0274 Vigna mungo HOM05D007062 ORTHO05D008941 7.3e-60 235.0 281 71.5
Peaxi162Scf00002g00075 Petunia axillaris HOM05D007062 ORTHO05D008941 2.1e-59 233.4 281 69.4
Ciclev10021545m.g Citrus clementina HOM05D007062 ORTHO05D008941 2.8e-59 233.0 283 71.7
CiPaw.12G106400 Carya illinoinensis HOM05D007062 ORTHO05D008941 3.6e-59 232.6 282 71.3
Cpa.g.sc29.119 Carica papaya HOM05D007062 ORTHO05D008941 6.1e-59 231.9 281 71.2
Atru.chr9.1388 Acer truncatum HOM05D007062 ORTHO05D008941 1.4e-58 230.7 281 71.5
Migut.A00806 Erythranthe guttata HOM05D007062 ORTHO05D008941 1.4e-58 230.7 282 69.5
Prupe.5G075900 Prunus persica HOM05D007062 ORTHO05D008941 4.0e-58 229.2 283 69.3
CSS0040813 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 6.8e-58 228.4 290 69.3
TPR.G25898 Trifolium pratense HOM05D007062 ORTHO05D008941 8.9e-58 228.0 283 72.1
Glyma.11G030700 Glycine max HOM05D007062 ORTHO05D008941 2.0e-57 226.9 282 71.3
Thecc.03G257500 Theobroma cacao HOM05D007062 ORTHO05D008941 2.6e-57 226.5 292 65.1
CSS0025302 Camellia sinensis var. sinensis HOM05D007062 ORTHO05D008941 4.4e-57 225.7 296 67.9
GSVIVG01001267001 Vitis vinifera HOM05D007062 ORTHO05D008941 4.4e-57 225.7 286 70.6
CsaV3_5G003940 Cucumis sativus L. HOM05D007062 ORTHO05D008941 9.8e-57 224.6 283 70.3
Lalb_Chr16g0379721 Lupinus albus HOM05D007062 ORTHO05D008941 9.8e-57 224.6 220 82.3
arahy.Tifrunner.gnm1.ann1.06MV4V Arachis hypogaea HOM05D007062 ORTHO05D008941 1.3e-56 224.2 215 85.1
arahy.Tifrunner.gnm1.ann1.FU46H2 Arachis hypogaea HOM05D007062 ORTHO05D008941 1.3e-56 224.2 215 85.1
Duzib205G0297 Durio zibethinus HOM05D007062 ORTHO05D008941 1.7e-56 223.8 286 71.3
Gohir.D08G190800 Gossypium hirsutum HOM05D007062 ORTHO05D008941 1.7e-56 223.8 287 67.2
Potri.003G112900 Populus trichocarpa HOM05D007062 ORTHO05D008941 1.7e-56 223.8 282 67.7
RcHm_v2.0_Chr7g0202221 Rosa chinensis HOM05D007062 ORTHO05D008941 1.7e-56 223.8 288 71.5
FAN08G1089 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.9e-56 223.0 251 77.7
FAN18G0001 Fragaria x ananassa HOM05D007062 ORTHO05D008941 2.9e-56 223.0 251 77.7
Eucgr.D02028 Eucalyptus grandis HOM05D007062 ORTHO05D008941 4.9e-56 222.2 257 58.8
Sed0027513 Sechium edule HOM05D007062 ORTHO05D008941 4.9e-56 222.2 279 71.3
TWI60G0310 Tripterygium wilfordii HOM05D007062 ORTHO05D008941 8.3e-56 221.5 268 72.8
FvH4_5g00330 Fragaria vesca HOM05D007062 ORTHO05D008941 1.1e-55 221.1 292 70.9
Gorai.004G200900 Gossypium raimondii HOM05D007062 ORTHO05D008941 1.1e-55 221.1 286 62.6
MELO3C005562.2 Cucumis melo HOM05D007062 ORTHO05D008941 1.4e-55 220.7 281 69.0
Cc08_g12960 Coffea canephora HOM05D007062 ORTHO05D008941 3.2e-55 219.5 282 69.5
ClCG01G003790 Citrullus lanatus HOM05D007062 ORTHO05D008941 4.1e-55 219.2 282 69.9
PGR031G1282 Punica granatum HOM05D007062 ORTHO05D008941 4.1e-55 219.2 218 71.1
Lsat_1_v5_gn_6_2361 Lactuca sativa HOM05D007062 ORTHO05D008941 5.4e-55 218.8 281 70.8
CANSAT21G0465 Cannabis sativa HOM05D007062 ORTHO05D008941 1.2e-54 217.6 289 69.9
Os02g0643500 Oryza sativa ssp. japonica HOM05D007062 ORTHO05D008941 2.7e-54 216.5 215 72.6
SalBow6G7097 Salvia bowleyana HOM05D007062 ORTHO05D008941 2.7e-54 216.5 282 69.1
PSO063G0503 Papaver somniferum HOM05D007062 ORTHO05D008941 3.5e-54 216.1 285 70.5
QL12p014002 Quercus lobata HOM05D007062 ORTHO05D008941 4.6e-54 215.7 322 43.8
Lj2g0026876 Lotus japonicus HOM05D007062 ORTHO05D008941 6.0e-54 215.3 280 68.9
SGA_v2.0_scaffold120G32845 Striga asiatica HOM05D007062 ORTHO05D008941 6.0e-54 215.3 280 70.4
Sc06g0007370 Simmondsia chinensis HOM05D007062 ORTHO05D008941 7.8e-54 214.9 281 68.3
HPP92_003260 Vanilla planifolia HOM05D007062 ORTHO05D008941 1.7e-53 213.8 226 81.0
MD06G1065500 Malus domestica HOM05D007062 ORTHO05D008941 2.3e-53 213.4 288 69.4
Hund11577 Selenicereus undatus HOM05D007062 ORTHO05D008941 8.6e-53 211.5 228 76.3
MSTRG.25539 Avicennia marina HOM05D007062 ORTHO05D008941 1.1e-52 211.1 283 59.0
Zm00001eb248670 Zea mays HOM05D007062 ORTHO05D008941 1.5e-52 210.7 275 68.0
Actinidia02105 Actinidia chinensis HOM05D007062 ORTHO05D008941 1.9e-52 210.3 281 69.4
HanXRQChr02g0049591 Helianthus annuus HOM05D007062 ORTHO05D008941 2.5e-52 209.9 308 65.3
PSO782G2909 Papaver somniferum HOM05D007062 ORTHO05D008941 2.5e-52 209.9 294 65.6
FAN04G1528 Fragaria x ananassa HOM05D007062 ORTHO05D008941 4.3e-52 209.1 282 51.4
SEGI_22381 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 1.6e-51 207.2 241 75.9
Ah.02g116970 Amaranthus hybridus HOM05D007062 ORTHO05D008941 4.7e-51 205.7 281 67.3
ATR0568G204 Amborella trichopoda HOM05D007062 ORTHO05D008941 1.4e-50 204.1 194 86.1
ECA232G1654 Erigeron canadensis HOM05D007062 ORTHO05D008941 1.4e-50 204.1 283 65.4
Medtr5g012110 Medicago truncatula HOM05D007062 ORTHO05D008941 1.8e-50 203.8 220 80.9
EL10Ac5g13006 Beta vulgaris HOM05D007062 ORTHO05D008941 2.3e-50 203.4 281 54.8
Mapoly0083s0077 Marchantia polymorpha HOM05D007062 ORTHO05D008941 4.0e-50 202.6 218 67.9
Aqoxy5G03933 Aquilegia oxysepala HOM05D007062 ORTHO05D008941 5.2e-50 202.2 277 69.0
vmacro05405 Vaccinium macrocarpon HOM05D007062 ORTHO05D008941 2.6e-49 199.9 194 82.0
Gohir.A08G172400 Gossypium hirsutum HOM05D007062 ORTHO05D008941 4.9e-48 195.7 193 75.6
SMO137G0193 Selaginella moellendorffii HOM05D007062 ORTHO05D008941 1.9e-47 193.7 217 65.4
Sabra03G0078200 Salix brachista HOM05D007062 ORTHO05D008941 2.4e-47 193.4 369 41.5
AUR62007471 Chenopodium quinoa HOM05D007062 ORTHO05D008941 8.6e-45 184.9 182 81.3
CBR_g19734 Chara braunii HOM05D007062 ORTHO05D008941 1.2e-43 181.0 236 60.6
Pp3c21_17930 Physcomitrium patens HOM05D007062 ORTHO05D008941 1.6e-43 180.6 265 63.0
CARHR012560 Cardamine hirsuta HOM05D007062 ORTHO05D008941 2.0e-41 173.7 85 97.6
FAN13G1422 Fragaria x ananassa HOM05D007062 ORTHO05D008941 3.7e-40 169.5 239 50.6
COL.COLO4_37223 Corchorus olitorius HOM05D007062 ORTHO05D008941 2.5e-36 156.8 87 85.1
CDE04G1356 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 3.3e-36 156.4 85 85.9
Hma1.2p1_1691F.1_g297800 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 1.6e-35 154.1 84 84.5
Hma1.2p1_1691F.1_g297810 Hydrangea macrophylla HOM05D007062 ORTHO05D008941 1.6e-35 154.1 84 84.5
DCAR_004919 Daucus carota HOM05D007062 ORTHO05D008941 6.2e-35 152.1 87 82.8
AUR62039929 Chenopodium quinoa HOM05D007062 ORTHO05D008941 5.2e-34 149.1 87 80.5
AUR62043761 Chenopodium quinoa HOM05D007062 ORTHO05D008941 5.2e-34 149.1 87 80.5
Glyma.01G211100 Glycine max HOM05D007062 ORTHO05D008941 2.3e-29 133.7 250 40.8
AagrBONN_evm.TU.Sc2ySwM_228.1920 Anthoceros agrestis HOM05D000741 ORTHO05D000506 4.7e-27 125.9 179 67.0
Dinv39100 Davidia involucrata HOM05D007062 ORTHO05D008941 2.9e-24 116.7 185 48.6
Cfa012777 Carpinus fangiana HOM05D007062 ORTHO05D008941 5.4e-23 112.5 217 67.3
Nn6g34047 Nelumbo nucifera HOM05D007062 ORTHO05D008941 5.6e-20 102.4 131 49.6
GSVIVG01001268001 Vitis vinifera HOM05D007062 ORTHO05D008941 1.8e-18 97.4 131 48.9
Haze_08582 Corylus avellana HOM05D007062 ORTHO05D008941 1.2e-17 94.7 143 54.5
Psat2g178680 Pisum sativum HOM05D007062 ORTHO05D008941 1.7e-16 90.9 131 48.9
Cre17.g721700 Chlamydomonas reinhardtii HOM05D007062 ORTHO05D008941 3.8e-16 89.7 182 50.5
CDE04G0607 Ceratophyllum demersum HOM05D007062 ORTHO05D008941 1.1e-15 88.2 68 64.7
CAN.G1293.1 Capsicum annuum HOM05D007062 ORTHO05D008941 7.9e-14 82.0 121 44.6
COL.COLO4_37221 Corchorus olitorius HOM05D007062 ORTHO05D008941 1.4e-10 71.2 72 52.8
Lj8A257G61 Lonicera japonica HOM05D007062 ORTHO05D008941 1.4e-10 71.2 43 74.4
MCO12G419 Micromonas commoda HOM05D007062 ORTHO05D008941 5.3e-10 69.3 43 74.4
Rhsim10G0100700 Rhododendron simsii HOM05D000726 ORTHO05D007554 3.8e-08 63.2 87 48.3
SEGI_25676 Sequoiadendron giganteum HOM05D007062 ORTHO05D008941 1.4e-07 61.2 40 70.0
MCO04G309 Micromonas commoda HOM05D007062 ORTHO05D008941 2.4e-07 60.5 51 56.9


User provided reference genes

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