Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 1.4e-240 835.9 419 100.0
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 2.6e-223 778.5 419 92.4
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 5.5e-213 744.2 419 87.1
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 3.0e-211 738.4 419 86.4
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 4.1e-208 728.0 419 85.4
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 3.4e-207 724.9 419 85.2
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 1.0e-206 723.4 419 85.0
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 2.2e-206 722.2 419 85.7
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 6.5e-206 720.7 419 84.5
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 6.5e-206 720.7 419 84.5
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 5.5e-197 691.0 420 82.1
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.4e-176 623.2 421 74.6
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 3.6e-172 608.6 420 72.9
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 3.2e-168 595.5 420 69.3
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 3.0e-166 589.0 420 68.3
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 2.5e-165 585.9 420 67.9
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 2.5e-165 585.9 420 67.9
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 2.5e-165 585.9 420 69.0
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 5.6e-165 584.7 420 68.1
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 7.3e-165 584.3 420 68.1
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 2.1e-164 582.8 420 67.6
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 2.8e-164 582.4 420 68.3
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 4.7e-164 581.6 420 68.1
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 4.0e-163 578.6 420 67.9
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 6.8e-163 577.8 420 67.4
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 8.9e-163 577.4 420 67.9
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 1.2e-162 577.0 420 67.1
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 1.5e-162 576.6 420 67.6
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.5e-162 576.6 420 67.1
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 2.0e-162 576.2 420 67.1
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 5.8e-162 574.7 420 67.6
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 7.5e-162 574.3 420 67.9
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 9.8e-162 573.9 420 67.9
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 1.3e-161 573.5 420 66.7
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 2.2e-161 572.8 420 67.1
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 2.9e-161 572.4 420 67.9
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 2.9e-161 572.4 420 66.7
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 6.4e-161 571.2 420 66.9
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 6.4e-161 571.2 419 67.8
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.4e-160 570.1 420 67.4
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 1.4e-160 570.1 420 64.8
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 1.9e-160 569.7 420 65.5
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 1.9e-160 569.7 420 66.0
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 4.1e-160 568.5 421 66.5
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 4.1e-160 568.5 420 66.7
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 4.1e-160 568.5 425 65.6
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 4.1e-160 568.5 420 66.2
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 9.2e-160 567.4 420 66.7
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 1.2e-159 567.0 420 66.0
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 7.8e-159 564.3 420 67.1
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 1.3e-158 563.5 421 66.3
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 1.3e-158 563.5 420 65.5
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 2.3e-158 562.8 420 66.9
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 3.0e-158 562.4 419 65.2
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 6.6e-158 561.2 420 66.9
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 6.6e-158 561.2 420 65.2
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 6.6e-158 561.2 420 65.2
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 1.1e-157 560.5 420 65.0
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 2.1e-156 556.2 420 65.5
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.1e-156 556.2 420 64.8
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 2.8e-156 555.8 421 65.3
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 3.6e-156 555.4 420 65.7
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 6.2e-156 554.7 420 65.2
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 6.2e-156 554.7 420 66.0
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 6.2e-156 554.7 420 63.8
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 1.1e-155 553.9 420 65.7
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 2.3e-155 552.7 421 64.6
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 5.2e-155 551.6 420 65.2
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.5e-154 550.1 420 64.0
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 3.4e-154 548.9 420 65.2
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 3.4e-154 548.9 420 64.8
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 9.8e-154 547.4 420 64.8
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 3.7e-153 545.4 420 64.8
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 4.9e-153 545.0 420 64.5
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 3.2e-152 542.3 420 63.1
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 4.1e-152 542.0 420 63.3
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 1.2e-151 540.4 410 65.6
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 2.1e-151 539.7 420 62.6
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 4.6e-151 538.5 420 62.1
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 1.7e-150 536.6 420 62.1
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.5e-149 533.5 408 63.7
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 1.5e-149 533.5 420 63.3
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 1.9e-149 533.1 420 62.9
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 2.5e-149 532.7 425 61.9
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 2.5e-149 532.7 420 62.4
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 3.3e-149 532.3 425 62.1
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 3.3e-149 532.3 405 64.2
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 4.3e-149 531.9 423 63.6
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 1.2e-148 530.4 425 62.6
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 1.6e-148 530.0 421 62.5
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 4.7e-148 528.5 420 62.9
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 6.2e-148 528.1 420 61.2
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 8.1e-148 527.7 416 61.8
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 6.8e-147 524.6 423 63.1
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 2.0e-146 523.1 421 63.9
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 3.4e-146 522.3 420 62.1
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 1.9e-144 516.5 420 61.0
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 1.2e-143 513.8 424 62.0
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 3.3e-141 505.8 420 61.7
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 4.3e-141 505.4 421 62.0
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 1.4e-139 500.4 422 60.0
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 3.4e-138 495.7 420 58.8
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 3.5e-135 485.7 420 58.1
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 4.6e-135 485.3 421 59.6
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 7.8e-135 484.6 421 57.0
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 8.7e-134 481.1 420 57.1
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 2.5e-133 479.6 421 60.1
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 9.6e-133 477.6 377 62.6
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 3.6e-132 475.7 420 59.0
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 8.1e-132 474.6 421 60.1
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 1.1e-131 474.2 420 57.1
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 4.8e-124 448.7 425 53.9
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 3.1e-123 446.0 421 53.7
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 5.6e-117 425.2 405 53.3
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 7.4e-117 424.9 356 61.5
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 2.9e-113 412.9 425 51.5
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 2.5e-109 399.8 425 49.9
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 5.7e-101 372.1 251 71.3
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 6.9e-99 365.2 282 62.1
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 2.0e-98 363.6 422 47.6
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 1.0e-97 361.3 402 44.5
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 8.2e-92 341.7 401 47.1
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 3.1e-83 313.2 374 43.3
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 7.0e-83 312.0 302 56.3
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 2.9e-81 306.6 418 41.6
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 7.5e-77 292.0 298 50.3
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 5.5e-72 275.8 248 55.6
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 2.3e-62 243.8 316 40.8
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.7e-57 227.6 266 48.1
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 1.2e-55 221.5 160 71.9
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 7.0e-51 205.7 133 71.4
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 5.6e-40 169.5 125 64.8
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 3.2e-35 153.7 98 75.5
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 4.3e-32 143.3 90 75.6
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.1e-24 118.6 73 75.3
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 2.5e-24 117.5 70 77.1
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 8.1e-23 112.5 70 75.7
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 1.2e-21 108.6 70 74.3
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.2e-21 108.6 70 74.3
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 7.6e-21 105.9 79 62.0
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 3.0e-17 94.0 97 51.5
Medtr7g104490 Medicago truncatula HOM05D003488 ORTHO05D004214 1.3e-09 68.6 302 23.8
Lalb_Chr02g0154961 Lupinus albus HOM05D003488 ORTHO05D004214 5.1e-09 66.6 240 26.7
MSTRG.5840 Avicennia marina HOM05D003488 ORTHO05D004214 4.3e-08 63.5 239 24.7
Medtr4g053260 Medicago truncatula HOM05D003488 ORTHO05D004214 7.4e-08 62.8 309 22.3
HPP92_003226 Vanilla planifolia HOM05D003488 ORTHO05D004214 9.6e-08 62.4 369 21.1
PGR102G1638 Punica granatum HOM05D003488 ORTHO05D004214 2.1e-07 61.2 285 21.1
Solyc07g064260.2 Solanum lycopersicum HOM05D000051 ORTHO05D000015 2.1e-07 61.2 227 28.2
A03p13450 Brassica napus HOM05D000051 ORTHO05D000015 3.7e-07 60.5 196 28.1
BraA03t10652Z Brassica rapa HOM05D000051 ORTHO05D000015 3.7e-07 60.5 196 28.1
Ca_08884_v3 Cicer arietinum L. HOM05D003488 ORTHO05D004214 3.7e-07 60.5 193 25.4
QL05p074545 Quercus lobata HOM05D000051 ORTHO05D000015 3.7e-07 60.5 279 25.4
Nitab4.5_0000397g0270 Nicotiana tabacum HOM05D000051 ORTHO05D000015 4.8e-07 60.1 229 27.9
SGA_v2.0_scaffold24G10274 Striga asiatica HOM05D000312 ORTHO05D000221 4.8e-07 60.1 202 26.7
Lsat_1_v5_gn_7_24441 Lactuca sativa HOM05D001396 ORTHO05D000493 6.2e-07 59.7 253 25.3
Sopen07g032410 Solanum pennellii HOM05D000051 ORTHO05D000015 6.2e-07 59.7 229 28.8
Glyma.19G194600 Glycine max HOM05D003488 ORTHO05D004214 8.1e-07 59.3 240 23.3
CSS0010373 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 1.1e-06 58.9 432 22.7
SEGI_39785 Sequoiadendron giganteum HOM05D003488 ORTHO05D004214 1.1e-06 58.9 312 25.0
vmacro09739 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 1.1e-06 58.9 249 26.1
VMungo1383G0237 Vigna mungo HOM05D003488 ORTHO05D004214 1.1e-06 58.9 298 21.1
CSS0008598 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 1.4e-06 58.5 284 25.4
FvH4_3g17080 Fragaria vesca HOM05D000051 ORTHO05D000015 1.4e-06 58.5 209 27.8
Phvul.001G189500 Phaseolus vulgaris HOM05D003488 ORTHO05D004214 1.4e-06 58.5 298 22.1
Nitab4.5_0011608g0030 Nicotiana tabacum HOM05D000051 ORTHO05D000015 1.8e-06 58.2 229 27.5
CSS0018246 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 2.4e-06 57.8 275 26.5
Lj3g0011633 Lotus japonicus HOM05D003488 ORTHO05D004214 2.4e-06 57.8 306 22.2
Prupe.8G148700 Prunus persica HOM05D000312 ORTHO05D000221 3.1e-06 57.4 201 21.4
CSS0009889 Camellia sinensis var. sinensis HOM05D001477 ORTHO05D001182 4.0e-06 57.0 201 24.4
CAN.G337.100 Capsicum annuum HOM05D000051 ORTHO05D000015 4.0e-06 57.0 229 28.4
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 5.3e-06 56.6 239 26.4
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 5.3e-06 56.6 239 26.4
Lsat_1_v5_gn_7_24981 Lactuca sativa HOM05D001396 ORTHO05D000493 5.3e-06 56.6 196 27.6
PGSC0003DMG401001040 Solanum tuberosum HOM05D000051 ORTHO05D000015 5.3e-06 56.6 229 28.4
CsaV3_3G044070 Cucumis sativus L. HOM05D001477 ORTHO05D001182 6.9e-06 56.2 205 25.4
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 6.9e-06 56.2 239 26.4
Potri.011G098700 Populus trichocarpa HOM05D008030 ORTHO05D003385 6.9e-06 56.2 275 23.6
RcHm_v2.0_Chr4g0421851 Rosa chinensis HOM05D000312 ORTHO05D000221 6.9e-06 56.2 257 24.5
CSS0034448 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 9.0e-06 55.8 432 22.5
Carub.0005s1520 Capsella rubella HOM05D000051 ORTHO05D000015 9.0e-06 55.8 233 24.5


User provided reference genes

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