Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G10522 Arabidopsis thaliana HOM05D003884 ORTHO05D004482 1.7e-99 365.9 180 100.0
AL1G21330 Arabidopsis lyrata HOM05D003884 ORTHO05D004482 4.3e-90 334.7 184 90.8
Carub.0001s0996 Capsella rubella HOM05D003884 ORTHO05D004482 2.0e-87 325.9 188 87.8
CARHR010670 Cardamine hirsuta HOM05D003884 ORTHO05D004482 1.3e-86 323.2 190 84.7
Thhalv10008855m.g Eutrema salsugineum HOM05D003884 ORTHO05D004482 4.6e-84 314.7 191 83.8
Sp1g09160 Schrenkiella parvula HOM05D003884 ORTHO05D004482 2.8e-81 305.4 189 82.5
BcaC05g24933 Brassica carinata HOM05D003884 ORTHO05D004482 1.2e-79 300.1 184 83.7
A06p07300 Brassica napus HOM05D003884 ORTHO05D004482 2.2e-78 295.8 183 83.6
BraA06t23935Z Brassica rapa HOM05D003884 ORTHO05D004482 2.2e-78 295.8 183 83.6
BcaC05g24871 Brassica carinata HOM05D003884 ORTHO05D004482 4.9e-78 294.7 183 83.1
C05p08810 Brassica napus HOM05D003884 ORTHO05D004482 1.9e-77 292.7 183 82.0
BolC5t29627H Brassica oleracea HOM05D003884 ORTHO05D004482 1.9e-77 292.7 183 82.0
Aa31LG1G4430 Aethionema arabicum HOM05D003884 ORTHO05D004482 7.6e-71 270.8 191 73.8
Gohir.D02G165800 Gossypium hirsutum HOM05D003884 ORTHO05D004482 2.8e-57 225.7 185 62.2
Gorai.005G185900 Gossypium raimondii HOM05D003884 ORTHO05D004482 9.1e-56 220.7 185 61.1
Thecc.02G242500 Theobroma cacao HOM05D003884 ORTHO05D004482 1.2e-55 220.3 129 78.3
THA.LOC104819574 Tarenaya hassleriana HOM05D003884 ORTHO05D004482 1.5e-55 219.9 187 65.2
Prupe.1G259800 Prunus persica HOM05D003884 ORTHO05D004482 7.7e-55 217.6 165 67.9
Duzib248G1092 Durio zibethinus HOM05D003884 ORTHO05D004482 1.3e-54 216.9 123 78.0
Atru.chr11.1961 Acer truncatum HOM05D003884 ORTHO05D004482 1.7e-54 216.5 184 59.8
Gohir.A03G142500 Gossypium hirsutum HOM05D003884 ORTHO05D004482 2.2e-54 216.1 184 60.3
Eucgr.B02560 Eucalyptus grandis HOM05D003884 ORTHO05D004482 2.9e-54 215.7 170 65.3
Sc14g0008540 Simmondsia chinensis HOM05D003884 ORTHO05D004482 2.9e-54 215.7 141 71.6
FvH4_4g35001 Fragaria vesca HOM05D003884 ORTHO05D004482 5.0e-54 214.9 125 78.4
Cpa.g.sc5.349 Carica papaya HOM05D003884 ORTHO05D004482 1.1e-53 213.8 114 82.5
Manes.05G090800 Manihot esculenta HOM05D003884 ORTHO05D004482 1.9e-53 213.0 123 76.4
FAN07G1004 Fragaria x ananassa HOM05D003884 ORTHO05D004482 3.2e-53 212.2 125 77.6
RcHm_v2.0_Chr4g0444531 Rosa chinensis HOM05D003884 ORTHO05D004482 3.2e-53 212.2 125 76.8
FAN12G1036 Fragaria x ananassa HOM05D003884 ORTHO05D004482 4.2e-53 211.8 125 77.6
Ciclev10032870m.g Citrus clementina HOM05D003884 ORTHO05D004482 5.5e-53 211.5 118 78.0
MD16G1086800 Malus domestica HOM05D003884 ORTHO05D004482 5.5e-53 211.5 153 66.7
Oeu001657.1 Olea europaea HOM05D003884 ORTHO05D004482 7.2e-53 211.1 150 68.0
TAR629G2251 Trochodendron aralioides HOM05D003884 ORTHO05D004482 9.4e-53 210.7 113 81.4
CSS0013891 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 1.2e-52 210.3 122 77.9
Cc00_g22770 Coffea canephora HOM05D003884 ORTHO05D004482 2.7e-52 209.1 183 61.7
Nn4g22884 Nelumbo nucifera HOM05D003884 ORTHO05D004482 4.7e-52 208.4 185 58.4
Dinv30997 Davidia involucrata HOM05D003884 ORTHO05D004482 7.9e-52 207.6 110 80.9
Dinv31106 Davidia involucrata HOM05D003884 ORTHO05D004482 7.9e-52 207.6 110 80.9
Potri.010G094900 Populus trichocarpa HOM05D003884 ORTHO05D004482 1.0e-51 207.2 191 57.1
PGR119G0467 Punica granatum HOM05D003884 ORTHO05D004482 1.0e-51 207.2 114 79.8
ClCG05G025040 Citrullus lanatus HOM05D003884 ORTHO05D004482 3.0e-51 205.7 113 78.8
MD13G1086700 Malus domestica HOM05D003884 ORTHO05D004482 3.9e-51 205.3 118 78.8
Ah.03g132360 Amaranthus hybridus HOM05D003884 ORTHO05D004482 5.2e-51 204.9 113 77.0
GSVIVG01020172001 Vitis vinifera HOM05D003884 ORTHO05D004482 5.2e-51 204.9 132 70.5
EL10Ac4g10087 Beta vulgaris HOM05D003884 ORTHO05D004482 6.7e-51 204.5 116 76.7
PGSC0003DMG400015599 Solanum tuberosum HOM05D003884 ORTHO05D004482 8.8e-51 204.1 181 58.6
CsaV3_5G031870 Cucumis sativus L. HOM05D003884 ORTHO05D004482 1.1e-50 203.8 139 66.9
Medtr8g063150 Medicago truncatula HOM05D003884 ORTHO05D004482 1.1e-50 203.8 157 65.0
MELO3C012025.2 Cucumis melo HOM05D003884 ORTHO05D004482 1.5e-50 203.4 121 73.6
Sed0006672 Sechium edule HOM05D003884 ORTHO05D004482 1.5e-50 203.4 116 76.7
Glyma.18G132900 Glycine max HOM05D003884 ORTHO05D004482 2.0e-50 203.0 171 59.6
COL.COLO4_38097 Corchorus olitorius HOM05D003884 ORTHO05D004482 2.6e-50 202.6 123 74.0
Solyc05g006110.3 Solanum lycopersicum HOM05D003884 ORTHO05D004482 2.6e-50 202.6 175 60.0
MSTRG.622 Avicennia marina HOM05D003884 ORTHO05D004482 3.3e-50 202.2 155 60.6
Nitab4.5_0000257g0220 Nicotiana tabacum HOM05D003884 ORTHO05D004482 3.3e-50 202.2 161 60.9
Sopen05g002130 Solanum pennellii HOM05D003884 ORTHO05D004482 3.3e-50 202.2 113 77.0
DCAR_026554 Daucus carota HOM05D003884 ORTHO05D004482 5.7e-50 201.4 170 60.0
Lj4g0002760 Lotus japonicus HOM05D003884 ORTHO05D004482 5.7e-50 201.4 156 63.5
Ca_22779_v3 Cicer arietinum L. HOM05D003884 ORTHO05D004482 2.2e-49 199.5 158 59.5
Sabra10G0067200 Salix brachista HOM05D003884 ORTHO05D004482 2.2e-49 199.5 189 56.1
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.8e-49 199.1 118 77.1
Actinidia08183 Actinidia chinensis HOM05D003884 ORTHO05D004482 3.7e-49 198.7 118 74.6
Hma1.2p1_0160F.1_g070580 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 4.8e-49 198.4 110 80.9
Lsat_1_v5_gn_3_49121 Lactuca sativa HOM05D003884 ORTHO05D004482 1.4e-48 196.8 111 77.5
Nitab4.5_0005722g0050 Nicotiana tabacum HOM05D003884 ORTHO05D004482 1.8e-48 196.4 164 59.1
Peaxi162Scf00421g00711 Petunia axillaris HOM05D003884 ORTHO05D004482 3.1e-48 195.7 117 75.2
Aqoxy3G03081 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 4.1e-48 195.3 118 72.9
CDE10G0847 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 4.1e-48 195.3 126 68.3
Rhsim12G0124300 Rhododendron simsii HOM05D003884 ORTHO05D004482 2.0e-47 193.0 118 75.4
VMungo0251G2950 Vigna mungo HOM05D003884 ORTHO05D004482 2.0e-47 193.0 146 60.3
CAN.G1160.2 Capsicum annuum HOM05D003884 ORTHO05D004482 2.6e-47 192.6 177 55.4
CANSAT11G1742 Cannabis sativa HOM05D003884 ORTHO05D004482 4.5e-47 191.8 115 73.9
PSO832G2848 Papaver somniferum HOM05D003884 ORTHO05D004482 4.5e-47 191.8 109 77.1
CDE10G0415 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 1.3e-46 190.3 126 66.7
SGA_v2.0_scaffold8G04247 Striga asiatica HOM05D003884 ORTHO05D004482 1.3e-46 190.3 123 69.1
AUR62039407 Chenopodium quinoa HOM05D003884 ORTHO05D004482 2.2e-46 189.5 164 56.1
Actinidia27769 Actinidia chinensis HOM05D003884 ORTHO05D004482 3.8e-46 188.7 117 71.8
arahy.Tifrunner.gnm1.ann1.FXM0G0 Arachis hypogaea HOM05D000677 ORTHO05D000727 3.8e-46 188.7 114 75.4
Migut.L01446 Erythranthe guttata HOM05D003884 ORTHO05D004482 3.8e-46 188.7 113 73.5
PSO063G2462 Papaver somniferum HOM05D003884 ORTHO05D004482 3.8e-46 188.7 110 74.5
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 5.0e-46 188.3 121 71.1
Phvul.003G055100 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 5.0e-46 188.3 173 56.6
TWI36G1174 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 6.5e-46 188.0 171 53.2
Psat4g126120 Pisum sativum HOM05D003884 ORTHO05D004482 8.5e-46 187.6 168 56.0
arahy.Tifrunner.gnm1.ann1.W247EX Arachis hypogaea HOM05D003884 ORTHO05D004482 1.1e-45 187.2 112 75.9
CiPaw.05G146300 Carya illinoinensis HOM05D003884 ORTHO05D004482 1.5e-45 186.8 126 64.3
Lalb_Chr05g0228011 Lupinus albus HOM05D003884 ORTHO05D004482 2.5e-45 186.0 160 55.0
Haze_12138 Corylus avellana HOM05D003884 ORTHO05D004482 5.5e-45 184.9 121 71.1
QL03p062483 Quercus lobata HOM05D003884 ORTHO05D004482 7.2e-45 184.5 123 66.7
ECA238G2328 Erigeron canadensis HOM05D003884 ORTHO05D004482 2.7e-44 182.6 104 76.9
HPP92_010213 Vanilla planifolia HOM05D003884 ORTHO05D004482 2.7e-44 182.6 157 56.7
unitig_62.g23678 Utricularia gibba HOM05D003884 ORTHO05D004482 4.7e-44 181.8 119 72.3
ATR1149G058 Amborella trichopoda HOM05D003884 ORTHO05D004482 1.4e-43 180.3 115 71.3
Lj3A1049T56 Lonicera japonica HOM05D003884 ORTHO05D004482 5.2e-43 178.3 120 71.7
vmacro16279 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 1.5e-37 160.2 130 60.0
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 2.5e-37 159.5 122 60.7
SalBow2G1244 Salvia bowleyana HOM05D003884 ORTHO05D004482 5.5e-37 158.3 118 61.9
Zm00001eb098980 Zea mays HOM05D003884 ORTHO05D004482 9.4e-37 157.5 120 64.2
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 3.0e-35 152.5 93 71.0
Os09g0382400 Oryza sativa ssp. japonica HOM05D003884 ORTHO05D004482 6.8e-35 151.4 120 60.8
PSO478G1563 Papaver somniferum HOM05D003884 ORTHO05D004482 5.4e-32 141.7 106 59.4
PSO161G0071 Papaver somniferum HOM05D003884 ORTHO05D004482 7.0e-32 141.4 106 59.4
GSVIVG01020166001 Vitis vinifera HOM05D003884 ORTHO05D004482 9.1e-32 141.0 105 61.0
CiPaw.05G149600 Carya illinoinensis HOM05D003884 ORTHO05D004482 1.2e-31 140.6 123 52.0
COL.COLO4_37908 Corchorus olitorius HOM05D003884 ORTHO05D004482 2.0e-31 139.8 104 59.6
Nitab4.5_0004536g0010 Nicotiana tabacum HOM05D003884 ORTHO05D004482 4.5e-31 138.7 106 58.5
TAR622G0672 Trochodendron aralioides HOM05D003884 ORTHO05D004482 1.0e-30 137.5 173 48.0
Manes.01G197000 Manihot esculenta HOM05D003884 ORTHO05D004482 1.3e-30 137.1 105 58.1
HPP92_017073 Vanilla planifolia HOM05D003884 ORTHO05D004482 1.3e-30 137.1 106 56.6
Dinv24898 Davidia involucrata HOM05D003884 ORTHO05D004482 2.3e-30 136.3 105 58.1
MSTRG.2381 Avicennia marina HOM05D003884 ORTHO05D004482 2.9e-30 136.0 108 54.6
Gorai.009G344500 Gossypium raimondii HOM05D003884 ORTHO05D004482 2.9e-30 136.0 105 57.1
Thecc.02G243200 Theobroma cacao HOM05D003884 ORTHO05D004482 2.9e-30 136.0 103 58.3
CSS0028392 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 3.8e-30 135.6 105 59.0
Nitab4.5_0004033g0080 Nicotiana tabacum HOM05D003884 ORTHO05D004482 3.8e-30 135.6 103 60.2
Aqoxy3G00923 Aquilegia oxysepala HOM05D003884 ORTHO05D004482 8.6e-30 134.4 104 58.7
Psat4g125600 Pisum sativum HOM05D003884 ORTHO05D004482 1.5e-29 133.7 179 43.0
Sed0027154 Sechium edule HOM05D003884 ORTHO05D004482 1.9e-29 133.3 106 56.6
PGSC0003DMG400015596 Solanum tuberosum HOM05D003884 ORTHO05D004482 1.9e-29 133.3 105 57.1
Glyma.08G290900 Glycine max HOM05D003884 ORTHO05D004482 2.5e-29 132.9 127 49.6
Gohir.D05G321100 Gossypium hirsutum HOM05D003884 ORTHO05D004482 2.5e-29 132.9 103 57.3
Haze_12163 Corylus avellana HOM05D003884 ORTHO05D004482 3.2e-29 132.5 103 57.3
TWI75G1604 Tripterygium wilfordii HOM05D003884 ORTHO05D004482 3.2e-29 132.5 151 45.0
FAN17G0777 Fragaria x ananassa HOM05D003884 ORTHO05D004482 4.2e-29 132.1 157 45.9
Gohir.A05G318900 Gossypium hirsutum HOM05D003884 ORTHO05D004482 5.5e-29 131.7 103 57.3
Hma1.2p1_1017F.1_g248220 Hydrangea macrophylla HOM05D003884 ORTHO05D004482 2.8e-28 129.4 105 56.2
FvH4_4g34960 Fragaria vesca HOM05D003884 ORTHO05D004482 3.6e-28 129.0 105 55.2
FAN12G0178 Fragaria x ananassa HOM05D003884 ORTHO05D004482 3.6e-28 129.0 105 55.2
Sopen05g002070 Solanum pennellii HOM05D003884 ORTHO05D004482 3.6e-28 129.0 105 55.2
Lsat_1_v5_gn_3_49081 Lactuca sativa HOM05D003884 ORTHO05D004482 4.7e-28 128.6 155 44.5
Duzib248G1263 Durio zibethinus HOM05D003884 ORTHO05D004482 6.1e-28 128.3 105 55.2
Medtr8g063190 Medicago truncatula HOM05D003884 ORTHO05D004482 8.0e-28 127.9 177 42.9
Prupe.1G258900 Prunus persica HOM05D003884 ORTHO05D004482 8.0e-28 127.9 105 53.3
Rhsim12G0124000 Rhododendron simsii HOM05D003884 ORTHO05D004482 8.0e-28 127.9 170 42.4
FAN22G1839 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.0e-27 127.5 157 45.2
CsaV3_5G031830 Cucumis sativus L. HOM05D003884 ORTHO05D004482 1.4e-27 127.1 106 52.8
FAN07G1775 Fragaria x ananassa HOM05D003884 ORTHO05D004482 1.4e-27 127.1 157 45.2
Oeu001665.1 Olea europaea HOM05D003884 ORTHO05D004482 2.3e-27 126.3 105 53.3
SGA_v2.0_scaffold87G27003 Striga asiatica HOM05D003884 ORTHO05D004482 2.3e-27 126.3 127 47.2
ATR1149G127 Amborella trichopoda HOM05D003884 ORTHO05D004482 1.5e-26 123.6 98 57.1
MD16G1087000 Malus domestica HOM05D003884 ORTHO05D004482 1.5e-26 123.6 62 87.1
Lj4g0012912 Lotus japonicus HOM05D003884 ORTHO05D004482 2.0e-26 123.2 115 49.6
Cpa.g.sc5.356 Carica papaya HOM05D003884 ORTHO05D004482 2.6e-26 122.9 108 53.7
CDE05G1492 Ceratophyllum demersum HOM05D003884 ORTHO05D004482 3.4e-26 122.5 105 53.3
MBI15_g16616_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 5.7e-26 121.7 94 60.6
AUR62026600 Chenopodium quinoa HOM05D003884 ORTHO05D004482 7.5e-26 121.3 108 49.1
ClCG05G025070 Citrullus lanatus HOM05D003884 ORTHO05D004482 1.7e-25 120.2 159 41.5
Migut.E00143 Erythranthe guttata HOM05D003884 ORTHO05D004482 1.7e-25 120.2 157 37.6
MBI15_g14835_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 1.7e-25 120.2 61 85.2
VMungo0251G0159 Vigna mungo HOM05D003884 ORTHO05D004482 6.3e-25 118.2 206 35.4
MELO3C012022.2 Cucumis melo HOM05D003884 ORTHO05D004482 1.4e-24 117.1 123 45.5
Peaxi162Scf00421g00615 Petunia axillaris HOM05D003884 ORTHO05D004482 1.8e-24 116.7 153 41.2
Phvul.003G054800 Phaseolus vulgaris HOM05D003884 ORTHO05D004482 5.4e-24 115.2 97 54.6
MBI15_g45678_MAGBIO Magnolia biondii HOM05D003884 ORTHO05D004482 1.2e-23 114.0 102 55.9
ECA246G1403 Erigeron canadensis HOM05D003884 ORTHO05D004482 2.7e-23 112.8 178 38.8
Atru.chr11.1968 Acer truncatum HOM05D003884 ORTHO05D004482 4.5e-23 112.1 88 59.1
Hund25320 Selenicereus undatus HOM05D003884 ORTHO05D004482 4.5e-23 112.1 151 41.1
arahy.Tifrunner.gnm1.ann1.9N1GR3 Arachis hypogaea HOM05D003884 ORTHO05D004482 3.3e-21 105.9 113 46.9
arahy.Tifrunner.gnm1.ann1.QD9WVF Arachis hypogaea HOM05D003884 ORTHO05D004482 3.3e-21 105.9 113 46.9
TPR.G35986 Trifolium pratense HOM05D003884 ORTHO05D004482 1.2e-20 104.0 59 74.6
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 2.8e-20 102.8 169 40.8
Medtr2g099400 Medicago truncatula HOM05D000001 ORTHO05D011365 4.7e-20 102.1 53 83.0
QL03p062328 Quercus lobata HOM05D003884 ORTHO05D004482 6.8e-19 98.2 189 32.8
EL10Ac6g13616 Beta vulgaris HOM05D000625 ORTHO05D000467 1.2e-18 97.4 94 47.9
PGR102G1298 Punica granatum HOM05D003884 ORTHO05D004482 7.5e-18 94.7 169 33.1
vmacro16296 Vaccinium macrocarpon HOM05D003884 ORTHO05D004482 9.8e-18 94.4 98 51.0
QL03p062368 Quercus lobata HOM05D003884 ORTHO05D004482 3.2e-16 89.4 212 29.2
TPR.G40428 Trifolium pratense HOM05D003884 ORTHO05D004482 1.2e-15 87.4 59 61.0
TPR.G39492 Trifolium pratense HOM05D003884 ORTHO05D004482 3.0e-14 82.8 99 46.5
CSS0008150 Camellia sinensis var. sinensis HOM05D003884 ORTHO05D004482 6.8e-11 71.6 75 46.7
Mapoly0021s0016 Marchantia polymorpha HOM05D003884 ORTHO05D004482 2.4e-08 63.2 95 33.7
CAN.G1248.1 Capsicum annuum HOM05D003884 ORTHO05D004482 2.0e-07 60.1 66 43.9
Medtr7g101780 Medicago truncatula HOM05D001475 ORTHO05D001525 1.3e-06 57.4 43 65.1
Nn3g16971 Nelumbo nucifera HOM05D003884 ORTHO05D004482 1.7e-06 57.0 47 57.4
Cc11_g14300 Coffea canephora HOM05D003884 ORTHO05D004482 8.6e-06 54.7 47 51.1


User provided reference genes

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