Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G06570 Arabidopsis thaliana HOM05D003673 ORTHO05D004764 6.9e-240 833.6 419 100.0
AL1G16600 Arabidopsis lyrata HOM05D003673 ORTHO05D004764 1.9e-213 745.7 388 95.6
CARHR006180 Cardamine hirsuta HOM05D003673 ORTHO05D004764 4.2e-213 744.6 408 89.7
Sp1g05330 Schrenkiella parvula HOM05D003673 ORTHO05D004764 8.2e-209 730.3 389 93.1
Thhalv10007634m.g Eutrema salsugineum HOM05D003673 ORTHO05D004764 2.9e-206 721.8 389 92.8
Carub.0001s0594 Capsella rubella HOM05D003673 ORTHO05D004764 2.5e-205 718.8 389 92.8
C08p51160 Brassica napus HOM05D003673 ORTHO05D004764 5.3e-200 701.0 388 90.2
BolC8t52642H Brassica oleracea HOM05D003673 ORTHO05D004764 5.3e-200 701.0 388 90.2
A09p66930 Brassica napus HOM05D003673 ORTHO05D004764 7.0e-200 700.7 389 90.5
BraA09t42028Z Brassica rapa HOM05D003673 ORTHO05D004764 1.0e-198 696.8 395 89.1
BolC5t29254H Brassica oleracea HOM05D003673 ORTHO05D004764 1.3e-198 696.4 390 89.2
BcaNung07075 Brassica carinata HOM05D003673 ORTHO05D004764 2.9e-198 695.3 390 88.7
BraA10t42788Z Brassica rapa HOM05D003673 ORTHO05D004764 8.5e-198 693.7 390 88.5
C05p04810 Brassica napus HOM05D003673 ORTHO05D004764 2.5e-197 692.2 391 88.0
A10p05210 Brassica napus HOM05D003673 ORTHO05D004764 1.2e-194 683.3 392 87.2
BcaC07g42060 Brassica carinata HOM05D003673 ORTHO05D004764 3.3e-194 681.8 389 88.9
Aa31LG1G7910 Aethionema arabicum HOM05D003673 ORTHO05D004764 5.7e-194 681.0 394 86.8
BcaB02g06780 Brassica carinata HOM05D003673 ORTHO05D004764 1.1e-192 676.8 391 88.5
THA.LOC104815838 Tarenaya hassleriana HOM05D003673 ORTHO05D004764 6.5e-182 641.0 392 82.1
Thecc.01G168600 Theobroma cacao HOM05D003673 ORTHO05D004764 3.7e-169 598.6 370 77.8
Gorai.001G092000 Gossypium raimondii HOM05D003673 ORTHO05D004764 7.0e-168 594.3 387 74.4
Gohir.D07G086000 Gossypium hirsutum HOM05D003673 ORTHO05D004764 1.2e-167 593.6 372 76.9
Cpa.g.sc50.111 Carica papaya HOM05D003673 ORTHO05D004764 1.7e-166 589.7 372 78.5
Gohir.A07G080400 Gossypium hirsutum HOM05D003673 ORTHO05D004764 2.3e-166 589.3 372 76.3
COL.COLO4_38400 Corchorus olitorius HOM05D003673 ORTHO05D004764 4.3e-165 585.1 370 76.8
CsaV3_4G032000 Cucumis sativus L. HOM05D003673 ORTHO05D004764 2.3e-163 579.3 383 74.9
MELO3C022961.2 Cucumis melo HOM05D003673 ORTHO05D004764 4.0e-163 578.6 378 74.6
ClCG11G016540 Citrullus lanatus HOM05D003673 ORTHO05D004764 5.2e-163 578.2 383 75.2
Sed0005423 Sechium edule HOM05D003673 ORTHO05D004764 1.2e-162 577.0 390 73.6
Ciclev10031587m.g Citrus clementina HOM05D003673 ORTHO05D004764 3.4e-162 575.5 364 75.5
Manes.02G088900 Manihot esculenta HOM05D003673 ORTHO05D004764 3.4e-162 575.5 384 73.7
Cfa023358 Carpinus fangiana HOM05D003673 ORTHO05D004764 3.7e-161 572.0 396 71.2
CSS0042622 Camellia sinensis var. sinensis HOM05D003673 ORTHO05D004764 1.9e-160 569.7 375 76.0
Haze_13556 Corylus avellana HOM05D003673 ORTHO05D004764 9.2e-160 567.4 396 70.7
Sabra02G0046800 Salix brachista HOM05D003673 ORTHO05D004764 1.2e-159 567.0 371 75.2
Eucgr.A02022 Eucalyptus grandis HOM05D003673 ORTHO05D004764 2.0e-159 566.2 384 72.7
TWI59G0698 Tripterygium wilfordii HOM05D003673 ORTHO05D004764 2.7e-159 565.8 401 70.8
Dinv07706 Davidia involucrata HOM05D003673 ORTHO05D004764 7.8e-159 564.3 395 71.1
Dinv07089 Davidia involucrata HOM05D003673 ORTHO05D004764 1.7e-158 563.1 382 72.5
arahy.Tifrunner.gnm1.ann1.FDUH0H Arachis hypogaea HOM05D003673 ORTHO05D004764 3.0e-158 562.4 387 73.6
arahy.Tifrunner.gnm1.ann1.I7WXBP Arachis hypogaea HOM05D003673 ORTHO05D004764 5.0e-158 561.6 394 73.6
PGR042G2748 Punica granatum HOM05D003673 ORTHO05D004764 5.0e-158 561.6 371 75.2
vmacro04781 Vaccinium macrocarpon HOM05D003673 ORTHO05D004764 5.0e-158 561.6 378 74.3
Potri.002G057400 Populus trichocarpa HOM05D003673 ORTHO05D004764 1.1e-157 560.5 371 74.7
TAR626G0427 Trochodendron aralioides HOM05D003673 ORTHO05D004764 1.1e-157 560.5 369 74.8
CiPaw.03G191900 Carya illinoinensis HOM05D003673 ORTHO05D004764 4.7e-156 555.1 390 69.7
FAN14G2563 Fragaria x ananassa HOM05D003673 ORTHO05D004764 6.2e-156 554.7 371 75.5
FvH4_6g38670 Fragaria vesca HOM05D003673 ORTHO05D004764 1.1e-155 553.9 371 75.5
RcHm_v2.0_Chr2g0152131 Rosa chinensis HOM05D003673 ORTHO05D004764 2.3e-155 552.7 368 74.5
CANSAT64G0060 Cannabis sativa HOM05D003673 ORTHO05D004764 3.1e-155 552.4 378 72.8
FAN02G0649 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.1e-155 552.4 371 74.9
Nn7g37943 Nelumbo nucifera HOM05D003673 ORTHO05D004764 3.1e-155 552.4 382 71.5
Ca_06264_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 6.8e-155 551.2 372 75.0
Ca_30265_v3 Cicer arietinum L. HOM05D003673 ORTHO05D004764 6.8e-155 551.2 372 75.0
FAN09G3261 Fragaria x ananassa HOM05D003673 ORTHO05D004764 6.8e-155 551.2 371 74.7
HanXRQChr14g0451901 Helianthus annuus HOM05D003673 ORTHO05D004764 6.8e-155 551.2 383 72.6
Psat2g017880 Pisum sativum HOM05D003673 ORTHO05D004764 8.9e-155 550.8 372 73.9
Sc19g0001760 Simmondsia chinensis HOM05D003673 ORTHO05D004764 8.9e-155 550.8 378 73.3
RcHm_v2.0_Chr2g0152141 Rosa chinensis HOM05D003673 ORTHO05D004764 2.0e-154 549.7 372 73.7
Prupe.3G177700 Prunus persica HOM05D003673 ORTHO05D004764 3.4e-154 548.9 381 73.0
LjContig00049g0013493 Lotus japonicus HOM05D003673 ORTHO05D004764 4.4e-154 548.5 393 71.0
MD17G1134800 Malus domestica HOM05D003673 ORTHO05D004764 5.8e-154 548.1 380 72.6
Hund22282 Selenicereus undatus HOM05D003673 ORTHO05D004764 9.8e-154 547.4 399 68.9
Ah.01g013590 Amaranthus hybridus HOM05D003673 ORTHO05D004764 2.2e-153 546.2 367 74.1
Glyma.14G030400 Glycine max HOM05D003673 ORTHO05D004764 2.2e-153 546.2 374 72.5
Medtr5g091060 Medicago truncatula HOM05D003673 ORTHO05D004764 2.2e-153 546.2 370 74.6
TPR.G10168 Trifolium pratense HOM05D003673 ORTHO05D004764 2.9e-153 545.8 374 73.3
FAN05G2105 Fragaria x ananassa HOM05D003673 ORTHO05D004764 8.3e-153 544.3 376 74.2
AUR62015128 Chenopodium quinoa HOM05D003673 ORTHO05D004764 1.9e-152 543.1 382 70.9
ECA238G4715 Erigeron canadensis HOM05D003673 ORTHO05D004764 3.2e-152 542.3 372 72.3
QL08p044989 Quercus lobata HOM05D003673 ORTHO05D004764 3.2e-152 542.3 370 73.0
Eucgr.A02024 Eucalyptus grandis HOM05D003673 ORTHO05D004764 4.1e-152 542.0 375 70.7
Rhsim07G0197900 Rhododendron simsii HOM05D003673 ORTHO05D004764 7.1e-152 541.2 380 70.8
CANSAT64G2396 Cannabis sativa HOM05D003673 ORTHO05D004764 9.2e-152 540.8 365 73.4
AUR62017589 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.7e-151 539.3 380 70.5
Lalb_Chr04g0248921 Lupinus albus HOM05D003673 ORTHO05D004764 4.6e-151 538.5 382 70.7
Lsat_1_v5_gn_2_96721 Lactuca sativa HOM05D003673 ORTHO05D004764 7.8e-151 537.7 374 72.5
Peaxi162Scf00416g00004 Petunia axillaris HOM05D003673 ORTHO05D004764 1.3e-150 537.0 380 70.5
Aqoxy1G01891 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 1.7e-150 536.6 374 71.4
DCAR_023045 Daucus carota HOM05D003673 ORTHO05D004764 8.6e-150 534.3 366 72.7
PGSC0003DMG400017420 Solanum tuberosum HOM05D003673 ORTHO05D004764 8.6e-150 534.3 367 72.2
Solyc07g045050.3 Solanum lycopersicum HOM05D003673 ORTHO05D004764 3.3e-149 532.3 391 69.8
Sopen07g023610 Solanum pennellii HOM05D003673 ORTHO05D004764 3.3e-149 532.3 391 69.6
Nitab4.5_0002201g0040 Nicotiana tabacum HOM05D003673 ORTHO05D004764 4.3e-149 531.9 377 70.3
EL10Ac9g22832 Beta vulgaris HOM05D003673 ORTHO05D004764 5.6e-149 531.6 366 72.1
SGA_v2.0_scaffold73G24479 Striga asiatica HOM05D003673 ORTHO05D004764 5.6e-149 531.6 367 73.6
VMungo0647G2026 Vigna mungo HOM05D003673 ORTHO05D004764 5.6e-149 531.6 370 72.7
Nitab4.5_0000006g0440 Nicotiana tabacum HOM05D003673 ORTHO05D004764 9.5e-149 530.8 377 70.3
PGSC0003DMG400017707 Solanum tuberosum HOM05D003673 ORTHO05D004764 2.1e-148 529.6 373 71.0
Aqoxy1G01890 Aquilegia oxysepala HOM05D003673 ORTHO05D004764 3.6e-148 528.9 366 72.4
CAN.G7.15 Capsicum annuum HOM05D003673 ORTHO05D004764 6.2e-148 528.1 368 70.9
Sopen05g024810 Solanum pennellii HOM05D003673 ORTHO05D004764 8.1e-148 527.7 368 71.7
Migut.M00071 Erythranthe guttata HOM05D003673 ORTHO05D004764 1.2e-146 523.9 376 71.0
Phvul.008G194300 Phaseolus vulgaris HOM05D003673 ORTHO05D004764 1.2e-146 523.9 370 70.8
Hma1.2p1_0033F.1_g021200 Hydrangea macrophylla HOM05D003673 ORTHO05D004764 2.2e-145 519.6 374 70.3
Medtr1g022325 Medicago truncatula HOM05D003673 ORTHO05D004764 2.9e-145 519.2 368 70.9
MSTRG.14903 Avicennia marina HOM05D003673 ORTHO05D004764 3.8e-145 518.8 393 68.2
PSO675G0095 Papaver somniferum HOM05D003673 ORTHO05D004764 2.4e-144 516.2 367 68.7
CDE05G0951 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 3.2e-144 515.8 401 67.1
Oeu051389.1 Olea europaea HOM05D003673 ORTHO05D004764 3.2e-144 515.8 374 70.1
Medtr5g090990 Medicago truncatula HOM05D003673 ORTHO05D004764 5.4e-144 515.0 368 70.1
COL.COLO4_38402 Corchorus olitorius HOM05D003673 ORTHO05D004764 9.2e-144 514.2 374 68.2
Eucgr.A02023 Eucalyptus grandis HOM05D003673 ORTHO05D004764 9.2e-144 514.2 395 64.1
MBI18_g13605_MAGBIO Magnolia biondii HOM05D003673 ORTHO05D004764 2.7e-143 512.7 396 66.9
CANSAT64G0777 Cannabis sativa HOM05D003673 ORTHO05D004764 1.7e-142 510.0 379 66.5
SalBow1G2057 Salvia bowleyana HOM05D003673 ORTHO05D004764 3.8e-137 492.3 357 71.1
EL10Ac9g22831 Beta vulgaris HOM05D003673 ORTHO05D004764 5.4e-136 488.4 355 68.7
PSO675G5654 Papaver somniferum HOM05D003673 ORTHO05D004764 1.6e-135 486.9 365 65.8
HPP92_002268 Vanilla planifolia HOM05D003673 ORTHO05D004764 1.0e-134 484.2 391 62.9
unitig_899.g15456 Utricularia gibba HOM05D003673 ORTHO05D004764 2.3e-134 483.0 367 69.2
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 7.3e-133 478.0 344 71.5
Lj8C8T1 Lonicera japonica HOM05D003673 ORTHO05D004764 6.2e-132 474.9 335 71.9
Lsat_1_v5_gn_6_42781 Lactuca sativa HOM05D003673 ORTHO05D004764 2.9e-129 466.1 370 62.4
PSO144G0168 Papaver somniferum HOM05D003673 ORTHO05D004764 2.1e-127 459.9 383 61.6
Actinidia24401 Actinidia chinensis HOM05D003673 ORTHO05D004764 2.3e-126 456.4 392 61.2
PSO210G1881 Papaver somniferum HOM05D003673 ORTHO05D004764 3.9e-126 455.7 386 60.6
PSO210G5105 Papaver somniferum HOM05D003673 ORTHO05D004764 3.9e-126 455.7 388 59.5
Pp3c1_27020 Physcomitrium patens HOM05D003673 ORTHO05D004764 3.9e-126 455.7 383 61.4
PSO210G6115 Papaver somniferum HOM05D003673 ORTHO05D004764 6.7e-126 454.9 389 60.7
PSO170G5322 Papaver somniferum HOM05D003673 ORTHO05D004764 1.5e-125 453.8 374 61.5
Mapoly0126s0038 Marchantia polymorpha HOM05D003673 ORTHO05D004764 1.3e-124 450.7 376 61.2
SEGI_30126 Sequoiadendron giganteum HOM05D003673 ORTHO05D004764 1.6e-124 450.3 370 62.2
ECA233G6193 Erigeron canadensis HOM05D003673 ORTHO05D004764 3.7e-124 449.1 367 62.4
CDE02G2922 Ceratophyllum demersum HOM05D003673 ORTHO05D004764 1.4e-123 447.2 379 63.1
Glyma.02G284600 Glycine max HOM05D003673 ORTHO05D004764 2.4e-123 446.4 355 64.5
Thecc.01G168800 Theobroma cacao HOM05D003673 ORTHO05D004764 5.3e-123 445.3 380 62.1
AagrBONN_evm.TU.Sc2ySwM_368.1457 Anthoceros agrestis HOM05D003673 ORTHO05D004764 1.2e-122 444.1 377 61.5
Zm00001eb232960 Zea mays HOM05D003673 ORTHO05D004764 4.5e-122 442.2 370 60.5
Pp3c2_15470 Physcomitrium patens HOM05D003673 ORTHO05D004764 7.6e-122 441.4 381 59.6
HanXRQChr02g0055101 Helianthus annuus HOM05D003673 ORTHO05D004764 1.7e-121 440.3 369 59.9
Solyc05g041200.4 Solanum lycopersicum HOM05D003673 ORTHO05D004764 1.6e-116 423.7 310 69.7
SMO358G0369 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 9.0e-115 417.9 372 58.6
PRCOL_00001771 Prasinoderma coloniale HOM05D003673 ORTHO05D004764 4.9e-113 412.1 382 56.3
Cre09.g399030 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 1.3e-110 404.1 372 58.1
CBR_g8495 Chara braunii HOM05D003673 ORTHO05D004764 7.6e-106 388.3 393 52.2
Cre09.g398993 Chlamydomonas reinhardtii HOM05D003673 ORTHO05D004764 7.6e-106 388.3 372 55.6
CBR_g41741 Chara braunii HOM05D003673 ORTHO05D004764 4.2e-104 382.5 393 51.4
CBR_g46667 Chara braunii HOM05D003673 ORTHO05D004764 1.0e-102 377.9 393 50.9
MD13G1156600 Malus domestica HOM05D003673 ORTHO05D004764 2.4e-99 366.7 379 52.2
SMO118G0557 Selaginella moellendorffii HOM05D003673 ORTHO05D004764 2.4e-99 366.7 394 50.3
Zm00001eb304950 Zea mays HOM05D003673 ORTHO05D004764 1.5e-98 364.0 355 53.2
AagrBONN_evm.TU.Sc2ySwM_368.1545 Anthoceros agrestis HOM05D003673 ORTHO05D004764 3.4e-98 362.8 372 52.4
MCO11G070 Micromonas commoda HOM05D003673 ORTHO05D004764 9.4e-96 354.8 374 52.7
Potri.005G205200 Populus trichocarpa HOM05D003673 ORTHO05D004764 1.0e-94 351.3 379 52.8
MD09G1148400 Malus domestica HOM05D003673 ORTHO05D004764 1.7e-89 334.0 298 61.4
Medtr5g090980 Medicago truncatula HOM05D003673 ORTHO05D004764 3.3e-85 319.7 319 54.5
Ah.02g114000 Amaranthus hybridus HOM05D003673 ORTHO05D004764 2.8e-84 316.6 324 52.8
Thecc.01G169100 Theobroma cacao HOM05D003673 ORTHO05D004764 4.8e-84 315.8 248 64.9
AUR62016194 Chenopodium quinoa HOM05D003673 ORTHO05D004764 6.3e-84 315.5 298 57.4
arahy.Tifrunner.gnm1.ann1.3I6JIA Arachis hypogaea HOM05D003673 ORTHO05D004764 3.3e-77 293.1 245 66.1
ATR0763G164 Amborella trichopoda HOM05D003673 ORTHO05D004764 1.7e-76 290.8 223 64.6
TPR.G25540 Trifolium pratense HOM05D003673 ORTHO05D004764 4.5e-74 282.7 366 44.8
Os02g0168100 Oryza sativa ssp. japonica HOM05D003673 ORTHO05D004764 1.0e-70 271.6 172 70.3
arahy.Tifrunner.gnm1.ann1.KE2YGW Arachis hypogaea HOM05D003673 ORTHO05D004764 4.7e-63 246.1 324 49.7
AUR62035117 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.9e-56 224.2 216 58.8
AUR62039294 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.9e-56 224.2 216 58.8
AUR62039298 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.9e-56 224.2 216 58.8
Atru.chr6.2046 Acer truncatum HOM05D003673 ORTHO05D004764 2.0e-53 214.2 113 89.4
FvH4_5g31130 Fragaria vesca HOM05D003673 ORTHO05D004764 3.1e-38 163.7 89 85.4
AUR62044532 Chenopodium quinoa HOM05D003673 ORTHO05D017143 1.2e-37 161.8 133 64.7
AUR62039301 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.0e-37 161.0 152 51.3
AUR62044533 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.0e-37 161.0 152 51.3
FAN18G0200 Fragaria x ananassa HOM05D003673 ORTHO05D004764 3.4e-37 160.2 89 83.1
Atru.chr6.2045 Acer truncatum HOM05D003673 ORTHO05D017143 7.5e-37 159.1 107 69.2
AUR62035118 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.2e-36 157.5 145 53.1
AUR62039293 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.2e-36 157.5 145 53.1
AUR62039297 Chenopodium quinoa HOM05D003673 ORTHO05D004764 2.2e-36 157.5 145 53.1
Cfa023357 Carpinus fangiana HOM05D003673 ORTHO05D017143 9.2e-35 152.1 111 70.3
Dinv42661 Davidia involucrata HOM05D002888 ORTHO05D003321 3.9e-33 146.7 125 59.2
Haze_25279 Corylus avellana HOM05D003673 ORTHO05D004764 1.4e-30 138.3 161 48.4
MD05G1024200 Malus domestica HOM05D003673 ORTHO05D004764 2.4e-30 137.5 76 80.3
COL.COLO4_20758 Corchorus olitorius HOM05D003673 ORTHO05D004764 5.6e-24 116.3 71 76.1
COL.COLO4_38401 Corchorus olitorius HOM05D003673 ORTHO05D004764 4.7e-23 113.2 145 46.9
Dinv21956 Davidia involucrata HOM05D003673 ORTHO05D004764 1.1e-22 112.1 107 57.0
ATR0763G191 Amborella trichopoda HOM05D003673 ORTHO05D017143 6.9e-22 109.4 114 50.0
GSVIVG01020837001 Vitis vinifera HOM05D003673 ORTHO05D004764 2.6e-21 107.5 54 88.9
AUR62039302 Chenopodium quinoa HOM05D003673 ORTHO05D017143 4.4e-21 106.7 135 53.3
Cc05_g01440 Coffea canephora HOM05D003673 ORTHO05D004764 5.8e-21 106.3 54 88.9
FAN21G3810 Fragaria x ananassa HOM05D003673 ORTHO05D025527 2.9e-12 77.4 137 39.4
COL.COLO4_19675 Corchorus olitorius HOM05D003673 ORTHO05D163473 6.4e-12 76.3 127 42.5
FAN10G3644 Fragaria x ananassa HOM05D003673 ORTHO05D025527 1.4e-11 75.1 137 38.7
GSVIVG01013079001 Vitis vinifera HOM05D003673 ORTHO05D004764 1.4e-11 75.1 43 79.1
FAN18G2996 Fragaria x ananassa HOM05D003673 ORTHO05D025527 3.2e-11 73.9 137 38.7
FAN25G1183 Fragaria x ananassa HOM05D003673 ORTHO05D025527 1.2e-10 72.0 107 43.0
MD05G1024100 Malus domestica HOM05D003673 ORTHO05D017143 1.0e-09 68.9 45 66.7
FvH4_6g00910 Fragaria vesca HOM05D003673 ORTHO05D025527 5.3e-06 56.6 74 44.6


User provided reference genes

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