Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 0.0e+00 1138.6 791 100.0
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 5.3e-217 758.4 883 66.9
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 1.1e-182 644.4 868 64.9
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 4.8e-141 506.1 862 51.2
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 6.0e-120 436.0 855 48.2
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 3.1e-116 423.7 862 50.2
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 3.2e-105 387.1 855 46.4
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 4.8e-101 373.2 816 51.0
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 8.2e-101 372.5 1054 45.7
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 4.8e-93 346.7 573 47.5
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 2.9e-90 337.4 813 43.1
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 3.8e-90 337.0 922 33.7
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 2.0e-86 324.7 563 46.5
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 2.2e-82 311.2 555 46.1
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 8.0e-80 302.8 408 52.0
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 2.6e-78 297.7 437 52.6
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 3.7e-77 293.9 576 42.0
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 4.2e-73 280.4 567 41.4
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 2.6e-70 271.2 603 39.0
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 9.8e-70 269.2 603 37.6
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 2.8e-69 267.7 602 37.0
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 1.4e-68 265.4 566 41.3
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 1.8e-68 265.0 599 36.1
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 5.9e-67 260.0 600 38.2
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 6.6e-66 256.5 600 37.3
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 2.5e-65 254.6 600 36.8
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 1.2e-64 252.3 605 37.9
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 2.8e-64 251.1 605 35.0
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 1.4e-63 248.8 452 45.1
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 2.3e-63 248.1 588 36.1
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 5.2e-63 246.9 825 30.4
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 1.2e-62 245.7 585 36.9
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 2.0e-62 245.0 513 39.6
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 7.5e-62 243.0 603 35.5
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 2.9e-61 241.1 660 35.3
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 8.3e-61 239.6 558 40.7
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 1.7e-58 231.9 589 35.1
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 5.0e-58 230.3 558 39.8
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 8.6e-58 229.6 340 47.9
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 1.6e-56 225.3 569 35.0
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 2.1e-56 224.9 600 35.3
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 8.0e-56 223.0 650 34.8
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 1.8e-55 221.9 600 33.2
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 4.1e-52 210.7 602 34.7
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 9.2e-52 209.5 583 32.9
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 2.0e-51 208.4 547 38.8
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 7.8e-51 206.5 334 45.2
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 1.0e-50 206.1 631 33.6
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 1.0e-50 206.1 588 32.0
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 3.0e-50 204.5 611 33.2
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 3.9e-50 204.1 602 33.9
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 5.0e-50 203.8 588 33.8
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 8.6e-50 203.0 603 33.3
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 8.6e-50 203.0 588 31.6
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 2.5e-49 201.4 580 34.1
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 7.3e-49 199.9 565 36.6
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 1.6e-48 198.7 340 45.0
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 1.6e-48 198.7 340 45.0
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.1e-47 196.1 586 34.1
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 5.2e-47 193.7 586 33.8
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 5.2e-47 193.7 666 32.6
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 2.6e-46 191.4 583 32.4
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 2.9e-45 188.0 616 32.0
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.4e-44 185.7 600 32.2
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 1.9e-44 185.3 237 53.2
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 2.4e-44 184.9 612 33.5
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 5.4e-44 183.7 316 49.1
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 7.1e-44 183.3 600 31.7
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 7.1e-44 183.3 595 32.6
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 2.7e-43 181.4 600 31.8
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 6.0e-43 180.3 593 33.2
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 2.3e-42 178.3 583 31.7
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 3.9e-42 177.6 597 30.8
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 5.1e-42 177.2 605 30.7
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 6.6e-42 176.8 409 35.2
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 6.6e-42 176.8 237 52.3
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 8.6e-42 176.4 587 31.0
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 4.3e-41 174.1 612 32.0
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 4.7e-40 170.6 613 30.0
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 1.1e-39 169.5 449 34.3
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 1.4e-39 169.1 447 35.6
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 2.3e-39 168.3 588 29.8
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 8.9e-39 166.4 661 27.4
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 1.5e-38 165.6 588 29.6
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 7.6e-38 163.3 401 36.2
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 7.6e-38 163.3 582 30.8
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 9.9e-38 162.9 301 47.5
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 9.9e-38 162.9 574 30.8
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 2.9e-37 161.4 334 40.1
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 4.9e-37 160.6 588 31.1
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 6.4e-37 160.2 503 31.6
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 1.6e-35 155.6 602 30.7
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 3.5e-35 154.5 583 29.7
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 6.0e-35 153.7 585 31.3
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 7.8e-35 153.3 585 29.9
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 3.0e-34 151.4 592 29.7
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 5.1e-34 150.6 419 33.2
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 1.1e-33 149.4 534 31.3
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 1.5e-33 149.1 596 30.5
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 5.6e-33 147.1 599 29.0
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 7.3e-33 146.7 588 30.6
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 9.6e-33 146.4 605 28.4
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 9.6e-33 146.4 583 29.7
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 1.2e-32 146.0 464 31.5
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 1.1e-31 142.9 800 26.1
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.1e-31 142.9 613 28.4
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.1e-31 142.9 613 28.4
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 3.1e-31 141.4 607 29.7
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 4.9e-29 134.0 567 28.6
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 8.4e-29 133.3 649 27.6
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 1.1e-28 132.9 630 28.6
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 2.4e-28 131.7 549 29.9
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 4.2e-28 131.0 584 27.4
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 4.2e-28 131.0 292 37.0
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 2.1e-27 128.6 537 29.8
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 2.1e-27 128.6 368 32.9
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 2.3e-26 125.2 339 32.7
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.9e-26 124.4 288 36.5
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 8.7e-26 123.2 599 28.7
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 2.5e-25 121.7 515 31.3
BcaC07g42136 Brassica carinata HOM05D003806 ORTHO05D004346 1.1e-23 116.3 349 36.4
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 3.4e-22 111.3 584 26.7
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 3.4e-22 111.3 628 28.7
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 8.4e-21 106.7 793 24.3
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 5.4e-20 104.0 513 27.3
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 7.1e-20 103.6 582 25.8
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 2.1e-19 102.1 338 28.7
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 3.5e-19 101.3 296 32.4
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 4.6e-19 100.9 471 29.5
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 2.3e-18 98.6 367 31.1
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 5.1e-18 97.4 272 31.6
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 6.6e-18 97.1 268 34.3
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 7.4e-17 93.6 558 26.9
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 8.1e-16 90.1 496 28.2
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 1.1e-15 89.7 313 30.4
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 2.4e-15 88.6 238 33.6
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 4.5e-14 84.3 487 26.5
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 4.5e-14 84.3 487 26.5
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 5.8e-14 84.0 297 30.6
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 9.3e-12 76.6 406 27.1
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.2e-11 76.3 488 25.4
BcaC09g49104 Brassica carinata HOM05D003806 ORTHO05D004346 3.5e-11 74.7 109 50.5
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 1.8e-10 72.4 683 21.8
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 6.7e-10 70.5 166 38.6
HPP92_027643 Vanilla planifolia HOM05D003806 ORTHO05D004346 6.7e-10 70.5 179 31.8
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.1e-09 69.7 380 26.8
C01p42510 Brassica napus HOM05D003806 ORTHO05D004346 2.1e-08 65.5 117 42.7
Aa31LG1G19290 Aethionema arabicum HOM05D003806 ORTHO05D004346 3.7e-08 64.7 161 36.6
Aa31LG1G19380 Aethionema arabicum HOM05D003806 ORTHO05D004346 3.7e-08 64.7 161 36.6
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 8.1e-08 63.5 196 30.6
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 1.4e-07 62.8 119 40.3
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 9.0e-07 60.1 426 24.6
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 2.0e-06 58.9 211 29.4
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 3.4e-06 58.2 79 41.8
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 4.5e-06 57.8 452 23.5
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 1.0e-05 56.6 70 47.1


User provided reference genes

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