Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 2.1e-151 539.3 293 100.0
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.4e-144 516.5 293 95.9
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 4.8e-132 474.9 293 88.4
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 9.4e-128 460.7 294 86.7
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 6.1e-111 404.8 288 78.5
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 7.0e-107 391.3 294 77.2
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 2.3e-102 376.3 275 76.4
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.2e-101 374.0 289 73.7
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 3.4e-101 372.5 294 73.8
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 5.8e-101 371.7 294 73.8
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 7.8e-98 361.3 302 69.9
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 3.0e-97 359.4 282 72.0
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 3.9e-97 359.0 295 70.5
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 1.1e-96 357.5 299 68.9
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 1.2e-95 354.0 304 68.4
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 3.6e-95 352.4 307 67.8
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 1.1e-94 350.9 296 68.6
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 1.2e-93 347.4 309 65.7
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 9.9e-93 344.4 311 65.6
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.9e-91 340.1 291 68.4
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 2.4e-91 339.7 296 67.2
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 3.2e-91 339.3 301 65.8
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 7.1e-91 338.2 304 67.8
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 1.2e-90 337.4 304 66.1
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 3.5e-90 335.9 306 64.4
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 6.0e-90 335.1 290 67.6
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 6.0e-90 335.1 309 65.0
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.3e-89 334.0 298 65.1
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 1.7e-89 333.6 309 64.1
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 3.0e-89 332.8 303 67.0
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 3.0e-89 332.8 291 68.0
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 3.9e-89 332.4 300 66.3
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 3.9e-89 332.4 300 65.3
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 5.1e-89 332.0 300 66.3
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 8.6e-89 331.3 310 63.5
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 1.1e-88 330.9 307 63.2
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 1.9e-88 330.1 304 65.1
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 5.6e-88 328.6 305 64.3
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 1.2e-87 327.4 304 64.5
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 1.6e-87 327.0 298 63.8
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 3.1e-86 322.8 295 63.4
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 4.0e-86 322.4 271 68.6
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 1.2e-85 320.9 293 65.9
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 4.4e-85 318.9 294 66.3
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 5.8e-85 318.5 291 67.0
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 5.8e-85 318.5 303 65.0
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 9.9e-85 317.8 291 65.3
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 1.7e-84 317.0 295 63.4
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 3.2e-83 312.8 294 64.3
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.2e-83 312.8 305 62.6
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 4.1e-83 312.4 295 64.7
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 5.4e-83 312.0 285 66.7
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 7.1e-83 311.6 257 68.1
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 1.6e-82 310.5 301 62.1
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 2.7e-82 309.7 340 57.4
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 4.6e-82 308.9 295 65.4
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 7.8e-82 308.1 309 62.5
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 1.0e-81 307.8 295 65.1
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 1.0e-81 307.8 306 62.1
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 1.1e-80 304.3 328 58.5
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 1.1e-80 304.3 282 63.5
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 2.5e-80 303.1 294 63.6
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 2.5e-80 303.1 294 63.6
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 4.3e-80 302.4 304 60.9
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 1.6e-79 300.4 303 61.1
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 2.1e-79 300.1 291 61.2
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 3.6e-79 299.3 300 61.3
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 3.1e-78 296.2 278 64.0
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 2.0e-77 293.5 291 61.2
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 2.6e-77 293.1 291 61.2
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 9.9e-77 291.2 290 61.4
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 1.3e-76 290.8 298 59.4
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 1.3e-76 290.8 290 60.0
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 1.7e-76 290.4 310 59.0
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 2.9e-76 289.7 199 80.4
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 1.9e-75 287.0 263 61.6
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 2.4e-75 286.6 288 61.5
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 7.1e-75 285.0 294 58.8
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 1.6e-74 283.9 295 59.0
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 1.7e-73 280.4 275 59.3
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 1.7e-73 280.4 293 59.4
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 3.9e-73 279.3 310 55.8
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 5.1e-73 278.9 294 58.8
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 5.1e-73 278.9 302 59.6
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 8.7e-73 278.1 293 60.1
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 2.5e-72 276.6 313 57.8
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 5.6e-72 275.4 242 67.4
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 7.3e-72 275.0 308 57.8
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 1.1e-70 271.2 257 63.0
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 1.4e-70 270.8 206 73.8
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 1.4e-70 270.8 206 73.8
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 1.8e-70 270.4 293 59.4
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.6e-69 266.5 271 59.8
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.6e-69 266.5 271 59.8
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 1.9e-67 260.4 222 67.1
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 1.2e-66 257.7 295 57.3
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 6.0e-66 255.4 271 57.9
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.0e-65 254.6 238 64.3
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 1.2e-61 241.1 277 54.9
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 5.8e-61 238.8 200 67.5
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 1.3e-60 237.7 304 51.6
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 1.1e-59 234.6 231 61.9
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.1e-59 234.6 294 50.3
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.1e-59 234.6 310 52.9
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 2.4e-59 233.4 200 66.0
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 1.2e-58 231.1 279 54.1
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 1.8e-57 227.3 296 54.7
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 2.3e-57 226.9 304 51.3
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 3.9e-57 226.1 244 56.6
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 5.1e-57 225.7 304 51.0
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 1.1e-56 224.6 191 67.5
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.1e-55 220.3 162 72.8
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 4.0e-54 216.1 294 48.3
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 3.4e-53 213.0 317 48.9
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.7e-52 210.7 319 47.0
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 1.7e-52 210.7 296 48.3
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 3.8e-52 209.5 255 52.5
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 8.4e-52 208.4 331 44.4
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 1.1e-51 208.0 313 47.6
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 4.2e-51 206.1 203 59.1
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 7.9e-50 201.8 239 55.2
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 1.3e-49 201.1 222 56.3
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 3.0e-49 199.9 149 72.5
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.5e-48 197.6 245 51.4
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 6.3e-47 192.2 146 74.7
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 3.2e-43 179.9 270 46.3
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 4.2e-43 179.5 292 44.2
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 1.4e-41 174.5 303 43.2
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 3.3e-40 169.9 293 43.0
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 4.3e-40 169.5 253 46.6
BcaC06g34635 Brassica carinata HOM05D004913 ORTHO05D006150 4.5e-37 159.5 129 74.4
Ah.13g071540 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.1e-35 154.8 156 62.2
TAR365G1176 Trochodendron aralioides HOM05D004913 ORTHO05D006150 2.3e-33 147.1 150 59.3
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 1.5e-32 144.4 294 39.8
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 1.1e-24 118.2 95 69.5
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 1.8e-22 110.9 136 47.8
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 8.5e-20 102.1 160 43.1
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 1.4e-14 84.7 88 52.3
Cre10.g452600 Chlamydomonas reinhardtii HOM05D004913 ORTHO05D006150 1.0e-09 68.6 220 27.7
Zm00001eb060940 Zea mays HOM05D004913 ORTHO05D006150 2.0e-08 64.3 58 67.2
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 7.5e-08 62.4 59 59.3
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 4.8e-07 59.7 172 31.4


User provided reference genes

Program Settings