Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G03180 Arabidopsis thaliana HOM05D007546 ORTHO05D009542 9.6e-98 360.1 180 100.0
AL1G12670 Arabidopsis lyrata HOM05D007546 ORTHO05D009542 4.6e-92 341.3 180 95.0
Carub.0001s0232 Capsella rubella HOM05D007546 ORTHO05D009542 1.1e-85 320.1 184 89.7
CARHR002520 Cardamine hirsuta HOM05D007546 ORTHO05D009542 3.7e-81 305.1 183 85.8
Thhalv10008478m.g Eutrema salsugineum HOM05D007546 ORTHO05D009542 4.6e-76 288.1 183 80.9
Sp1g02200 Schrenkiella parvula HOM05D007546 ORTHO05D009542 1.8e-75 286.2 183 80.9
BraA08t35641Z Brassica rapa HOM05D005387 ORTHO05D006711 1.4e-69 266.5 171 79.5
Aa31LG1G9350 Aethionema arabicum HOM05D007546 ORTHO05D009542 3.2e-69 265.4 163 85.3
C08p00480 Brassica napus HOM05D005387 ORTHO05D006711 5.5e-69 264.6 170 80.6
THA.LOC104801231 Tarenaya hassleriana HOM05D007546 ORTHO05D009542 1.1e-66 256.9 183 73.2
BcaC07g36978 Brassica carinata HOM05D005387 ORTHO05D006711 1.5e-66 256.5 168 80.4
A08p37430 Brassica napus HOM05D005387 ORTHO05D006711 9.1e-64 247.3 196 68.9
Atru.chr5.1426 Acer truncatum HOM05D007546 ORTHO05D009542 7.7e-55 217.6 195 59.0
Cpa.g.sc52.28 Carica papaya HOM05D007546 ORTHO05D009542 2.9e-54 215.7 191 59.2
TWI14G0110 Tripterygium wilfordii HOM05D007546 ORTHO05D009542 6.1e-52 208.0 193 56.5
Hma1.2p1_0257F.1_g103530 Hydrangea macrophylla HOM05D007546 ORTHO05D009542 1.4e-51 206.8 186 56.5
Gohir.D08G076500 Gossypium hirsutum HOM05D007546 ORTHO05D009542 3.0e-51 205.7 192 56.8
Potri.005G208700 Populus trichocarpa HOM05D007546 ORTHO05D009542 3.0e-51 205.7 194 55.7
CSS0011141 Camellia sinensis var. sinensis HOM05D007546 ORTHO05D009542 6.7e-51 204.5 185 58.4
Peaxi162Scf01622g00012 Petunia axillaris HOM05D007546 ORTHO05D009542 6.7e-51 204.5 193 56.5
Dinv34747 Davidia involucrata HOM05D007546 ORTHO05D009542 1.5e-50 203.4 185 57.8
Sabra05G0158800 Salix brachista HOM05D007546 ORTHO05D009542 2.0e-50 203.0 195 55.4
TPR.G6147 Trifolium pratense HOM05D007546 ORTHO05D009542 3.3e-50 202.2 180 58.9
Actinidia24887 Actinidia chinensis HOM05D007546 ORTHO05D009542 9.7e-50 200.7 184 57.1
Medtr7g094790 Medicago truncatula HOM05D007546 ORTHO05D009542 2.8e-49 199.1 180 57.8
Aqoxy2G03310 Aquilegia oxysepala HOM05D007546 ORTHO05D009542 4.8e-49 198.4 192 56.2
QL12p022024 Quercus lobata HOM05D007546 ORTHO05D009542 4.8e-49 198.4 195 53.3
Duzib138G1282 Durio zibethinus HOM05D007546 ORTHO05D009542 1.8e-48 196.4 194 51.5
ECA247G1813 Erigeron canadensis HOM05D007546 ORTHO05D009542 3.1e-48 195.7 190 52.6
Psat3g064520 Pisum sativum HOM05D007546 ORTHO05D009542 3.1e-48 195.7 180 56.1
Gohir.A08G068100 Gossypium hirsutum HOM05D007546 ORTHO05D009542 4.1e-48 195.3 192 53.6
VMungo1383G0744 Vigna mungo HOM05D007546 ORTHO05D009542 7.0e-48 194.5 183 55.7
CsaV3_7G028190 Cucumis sativus L. HOM05D007546 ORTHO05D009542 9.1e-48 194.1 196 52.6
PGSC0003DMG402012883 Solanum tuberosum HOM05D007546 ORTHO05D009542 1.6e-47 193.4 195 54.9
MELO3C015843.2 Cucumis melo HOM05D007546 ORTHO05D009542 2.6e-47 192.6 196 52.0
CANSAT25G0166 Cannabis sativa HOM05D007546 ORTHO05D009542 3.5e-47 192.2 192 51.6
HanXRQChr10g0282741 Helianthus annuus HOM05D007546 ORTHO05D009542 4.5e-47 191.8 195 49.7
MSTRG.18229 Avicennia marina HOM05D007546 ORTHO05D009542 1.7e-46 189.9 177 55.4
DCAR_018417 Daucus carota HOM05D007546 ORTHO05D009542 2.9e-46 189.1 194 51.5
Migut.D00289 Erythranthe guttata HOM05D007546 ORTHO05D009542 2.9e-46 189.1 193 52.8
Sed0013948 Sechium edule HOM05D007546 ORTHO05D009542 2.9e-46 189.1 193 50.3
Prupe.8G241900 Prunus persica HOM05D007546 ORTHO05D009542 3.8e-46 188.7 196 50.0
Nn2g12733 Nelumbo nucifera HOM05D007546 ORTHO05D009542 6.5e-46 188.0 194 51.5
Solyc09g065110.4 Solanum lycopersicum HOM05D007546 ORTHO05D009542 6.5e-46 188.0 195 53.3
Sopen09g026830 Solanum pennellii HOM05D007546 ORTHO05D009542 1.1e-45 187.2 195 53.3
SGA_v2.0_scaffold1G00465 Striga asiatica HOM05D007546 ORTHO05D009542 1.5e-45 186.8 184 52.7
GSVIVG01011126001 Vitis vinifera HOM05D007546 ORTHO05D009542 1.9e-45 186.4 196 50.0
SalBow4G0341 Salvia bowleyana HOM05D007546 ORTHO05D009542 3.2e-45 185.7 193 53.4
MBI19_g16657_MAGBIO Magnolia biondii HOM05D007546 ORTHO05D009542 4.2e-45 185.3 185 55.7
PSO170G1280 Papaver somniferum HOM05D007546 ORTHO05D009542 4.2e-45 185.3 179 53.6
Lj1g0009003 Lotus japonicus HOM05D007546 ORTHO05D009542 5.5e-45 184.9 187 52.4
Lalb_Chr01g0013761 Lupinus albus HOM05D007546 ORTHO05D009542 1.6e-44 183.3 180 50.6
Ciclev10023872m.g Citrus clementina HOM05D007546 ORTHO05D009542 3.6e-44 182.2 180 54.4
Lsat_1_v5_gn_9_3860 Lactuca sativa HOM05D007546 ORTHO05D009542 1.0e-43 180.6 181 52.5
Eucgr.H01486 Eucalyptus grandis HOM05D007546 ORTHO05D009542 1.4e-43 180.3 192 51.0
ClCG09G006970 Citrullus lanatus HOM05D007546 ORTHO05D009542 2.3e-43 179.5 215 46.5
Gorai.004G081100 Gossypium raimondii HOM05D007546 ORTHO05D009542 3.0e-43 179.1 175 55.4
Ca_08577_v3 Cicer arietinum L. HOM05D007546 ORTHO05D009542 6.7e-43 177.9 161 56.5
PGR119G0241 Punica granatum HOM05D007546 ORTHO05D009542 2.0e-42 176.4 184 51.6
unitig_61.g26331 Utricularia gibba HOM05D007546 ORTHO05D009542 2.6e-42 176.0 183 49.7
Cc01_g19550 Coffea canephora HOM05D007546 ORTHO05D009542 4.4e-42 175.3 188 48.4
arahy.Tifrunner.gnm1.ann1.P6ZKNU Arachis hypogaea HOM05D007546 ORTHO05D009542 5.7e-42 174.9 180 48.9
Hund05346 Selenicereus undatus HOM05D007546 ORTHO05D009542 9.7e-42 174.1 195 47.7
arahy.Tifrunner.gnm1.ann1.99CH68 Arachis hypogaea HOM05D007546 ORTHO05D009542 1.3e-41 173.7 180 48.3
arahy.Tifrunner.gnm1.ann1.N7I060 Arachis hypogaea HOM05D007546 ORTHO05D009542 1.3e-41 173.7 180 48.3
COL.COLO4_09104 Corchorus olitorius HOM05D007546 ORTHO05D009542 3.7e-41 172.2 177 52.0
FvH4_2g23671 Fragaria vesca HOM05D007546 ORTHO05D009542 3.7e-41 172.2 188 46.8
FAN24G2921 Fragaria x ananassa HOM05D005331 ORTHO05D007596 3.7e-41 172.2 188 46.8
MD11G1286600 Malus domestica HOM05D007546 ORTHO05D009542 4.8e-41 171.8 186 48.9
RcHm_v2.0_Chr6g0291141 Rosa chinensis HOM05D007546 ORTHO05D009542 6.3e-41 171.4 184 46.7
AUR62036823 Chenopodium quinoa HOM05D007546 ORTHO05D009542 8.2e-41 171.0 194 45.9
Thecc.01G280300 Theobroma cacao HOM05D007546 ORTHO05D009542 8.2e-41 171.0 147 57.8
AUR62038619 Chenopodium quinoa HOM05D007546 ORTHO05D009542 1.4e-40 170.2 194 45.4
FAN20G2110 Fragaria x ananassa HOM05D005331 ORTHO05D007596 5.3e-40 168.3 188 45.7
vmacro14926 Vaccinium macrocarpon HOM05D007546 ORTHO05D009542 3.5e-39 165.6 174 48.3
HPP92_010632 Vanilla planifolia HOM05D007546 ORTHO05D009542 7.7e-39 164.5 178 48.9
Nitab4.5_0010448g0030 Nicotiana tabacum HOM05D007546 ORTHO05D009542 1.0e-38 164.1 148 58.8
Lj2C1174G3 Lonicera japonica HOM05D007546 ORTHO05D009542 1.3e-38 163.7 174 53.4
Nitab4.5_0001028g0010 Nicotiana tabacum HOM05D007546 ORTHO05D009542 1.3e-38 163.7 147 59.2
EL10Ac7g17228 Beta vulgaris HOM05D007546 ORTHO05D009542 1.1e-37 160.6 194 42.3
FAN15G1459 Fragaria x ananassa HOM05D005331 ORTHO05D007596 2.5e-37 159.5 215 41.9
Hma1.2p1_0257F.1_g103520 Hydrangea macrophylla HOM05D007546 ORTHO05D009542 9.4e-37 157.5 145 56.6
Os05g0251400 Oryza sativa ssp. japonica HOM05D007546 ORTHO05D009542 1.2e-36 157.1 194 46.4
Manes.01G208300 Manihot esculenta HOM05D007546 ORTHO05D009542 2.1e-36 156.4 141 60.3
Haze_04718 Corylus avellana HOM05D007546 ORTHO05D009542 3.6e-36 155.6 148 56.1
Oeu012757.1 Olea europaea HOM05D007546 ORTHO05D009542 5.2e-35 151.8 141 56.0
CAN.G242.7 Capsicum annuum HOM05D007546 ORTHO05D009542 8.3e-33 144.4 139 56.8
ATR0626G078 Amborella trichopoda HOM05D007546 ORTHO05D009542 2.7e-31 139.4 176 45.5
Sc05g0004940 Simmondsia chinensis HOM05D007546 ORTHO05D009542 1.7e-30 136.7 132 55.3
Zm00001eb132020 Zea mays HOM05D007546 ORTHO05D009542 5.0e-30 135.2 188 42.6
Potri.002G053801 Populus trichocarpa HOM05D007546 ORTHO05D009542 1.9e-29 133.3 141 53.2
AUR62043164 Chenopodium quinoa HOM05D007546 ORTHO05D009542 2.5e-29 132.9 134 50.7
Ah.15g091950 Amaranthus hybridus HOM05D007546 ORTHO05D009542 5.7e-26 121.7 145 44.8
Phvul.001G150400 Phaseolus vulgaris HOM05D007546 ORTHO05D009542 7.5e-18 94.7 105 51.4
Glyma.03G153000 Glycine max HOM05D007546 ORTHO05D009542 2.4e-16 89.7 103 48.5
Mapoly0002s0121 Marchantia polymorpha HOM05D007546 ORTHO05D009542 3.7e-09 65.9 194 27.8
MCO04G533 Micromonas commoda HOM05D007546 ORTHO05D009542 2.0e-07 60.1 180 25.6


User provided reference genes

Program Settings