Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 7.9e-234 813.5 451 100.0
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 5.7e-208 727.6 453 92.1
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 2.2e-183 646.0 452 83.8
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 1.3e-175 620.2 457 79.6
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 3.4e-160 568.9 452 73.5
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 8.4e-159 564.3 453 71.7
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 5.3e-145 518.5 464 65.3
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 6.0e-141 505.0 476 64.7
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 2.3e-140 503.1 473 64.9
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 1.7e-135 486.9 458 66.4
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 5.5e-134 481.9 460 63.9
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 3.9e-132 475.7 460 62.2
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 1.1e-129 467.6 450 64.2
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 3.8e-127 459.1 439 65.1
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 5.0e-127 458.8 444 63.5
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 4.2e-126 455.7 445 64.0
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 4.8e-122 442.2 453 61.6
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 6.3e-114 415.2 470 59.8
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 2.3e-79 300.4 459 45.1
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 1.5e-78 297.7 463 45.6
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 9.5e-78 295.0 465 45.4
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 2.1e-77 293.9 462 43.5
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 1.0e-76 291.6 459 45.1
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 2.6e-75 287.0 461 44.3
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 5.8e-75 285.8 460 43.5
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 2.9e-74 283.5 469 43.5
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 9.2e-73 278.5 466 42.9
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 2.0e-72 277.3 480 45.6
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.3e-71 273.9 480 45.2
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 3.9e-71 273.1 423 44.7
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 6.6e-71 272.3 466 43.8
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 7.3e-70 268.9 467 41.8
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 7.3e-70 268.9 469 42.0
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 1.8e-68 264.2 458 42.8
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 3.1e-68 263.5 471 42.7
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 6.8e-68 262.3 457 43.5
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.2e-67 261.5 472 43.0
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.6e-67 260.4 471 44.6
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 4.4e-67 259.6 470 41.1
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.7e-66 256.5 469 42.2
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 4.9e-66 256.1 424 43.2
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 8.3e-66 255.4 380 43.7
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 2.4e-65 253.8 279 54.1
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 3.9e-63 246.5 434 41.0
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 3.9e-63 246.5 473 41.0
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 3.3e-62 243.4 459 40.3
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 9.5e-62 241.9 456 40.8
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 1.2e-61 241.5 468 37.4
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 8.1e-61 238.8 434 40.1
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 8.9e-60 235.3 462 41.1
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 8.9e-60 235.3 468 39.7
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 1.5e-59 234.6 475 38.1
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 2.6e-59 233.8 471 38.2
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 1.3e-58 231.5 470 38.5
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 2.2e-58 230.7 458 39.1
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 6.4e-58 229.2 458 40.0
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 4.6e-56 223.0 255 53.3
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 7.8e-56 222.2 461 38.0
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 3.9e-55 219.9 430 39.8
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 8.6e-55 218.8 482 38.0
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 2.5e-54 217.2 464 38.6
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 4.3e-54 216.5 258 50.8
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 2.8e-53 213.8 436 36.0
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 2.0e-51 207.6 325 43.4
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 3.4e-51 206.8 443 36.8
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 4.4e-51 206.5 464 36.4
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 7.6e-51 205.7 454 36.1
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 1.7e-50 204.5 472 37.1
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.1e-48 197.6 284 45.8
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 2.1e-48 197.6 459 38.6
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 2.7e-48 197.2 431 37.1
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 6.0e-48 196.1 422 37.4
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 7.8e-48 195.7 454 36.6
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 7.8e-48 195.7 521 34.4
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 8.7e-47 192.2 217 58.5
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 1.1e-46 191.8 407 38.8
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 2.5e-46 190.7 471 35.0
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 5.6e-46 189.5 243 49.8
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 5.6e-46 189.5 442 37.6
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 7.3e-46 189.1 475 34.9
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 2.8e-45 187.2 256 43.8
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 3.6e-45 186.8 469 34.3
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.1e-44 185.3 453 34.0
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.4e-44 184.9 269 44.2
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 1.4e-44 184.9 451 34.4
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 7.6e-43 179.1 433 34.2
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 1.3e-42 178.3 471 32.1
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 2.2e-42 177.6 429 35.2
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 3.8e-42 176.8 264 47.0
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 8.4e-42 175.6 241 48.1
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 1.2e-40 171.8 188 54.8
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 1.6e-40 171.4 390 36.7
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 4.6e-40 169.9 276 45.7
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 5.1e-39 166.4 467 32.8
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.5e-38 164.1 255 44.7
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 3.3e-38 163.7 405 34.8
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 1.3e-37 161.8 299 40.5
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 1.3e-37 161.8 330 38.5
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 3.1e-36 157.1 249 46.2
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 9.0e-36 155.6 261 42.5
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 9.0e-36 155.6 452 33.8
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 5.8e-35 152.9 406 32.8
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 1.3e-34 151.8 418 31.3
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 3.9e-31 140.2 469 29.9
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 5.1e-31 139.8 197 49.2
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 4.8e-29 133.3 219 42.5
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 8.1e-29 132.5 467 29.3
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 8.4e-26 122.5 372 31.2
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 1.1e-25 122.1 297 35.0
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 1.9e-25 121.3 300 32.7
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 3.5e-24 117.1 296 33.8
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 9.0e-20 102.4 113 54.9
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 9.0e-20 102.4 141 50.4
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 4.2e-17 93.6 120 45.0
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 9.3e-17 92.4 518 30.5
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 2.7e-16 90.9 316 29.1
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 3.5e-16 90.5 347 29.4
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.3e-15 88.6 136 45.6
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 2.3e-15 87.8 118 48.3
BcaB08g36158 Brassica carinata HOM05D005648 ORTHO05D039826 4.3e-14 83.6 86 55.8
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 7.4e-14 82.8 279 35.5
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 1.0e-10 72.4 105 47.6
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.9e-10 70.9 72 51.4
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 3.8e-10 70.5 83 54.2
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 5.0e-10 70.1 72 52.8
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 7.2e-09 66.2 67 49.3
Ciclev10024524m.g Citrus clementina HOM05D005648 ORTHO05D007357 9.4e-09 65.9 63 58.7
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 9.4e-09 65.9 77 53.2
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 4.6e-08 63.5 72 61.1
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.8e-07 61.6 115 39.1
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 3.0e-07 60.8 84 51.2
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 5.1e-07 60.1 103 35.0
Sabra02G0127100 Salix brachista HOM05D005648 ORTHO05D007357 6.7e-07 59.7 153 32.7
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 7.4e-06 56.2 147 32.0


User provided reference genes

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