Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G46860 Arabidopsis lyrata HOM05D000070 ORTHO05D080410 3.6e-22 107.5 58 100.0
AL9U10570 Arabidopsis lyrata HOM05D000070 ORTHO05D080384 3.6e-22 107.5 58 100.0
THA.LOC104814549 Tarenaya hassleriana HOM05D000070 ORTHO05D003190 2.1e-09 65.1 48 77.1
Aa31LG2G21370 Aethionema arabicum HOM05D000070 ORTHO05D003190 2.7e-09 64.7 41 82.9
AL3G47950 Arabidopsis lyrata HOM05D000070 ORTHO05D003190 2.7e-09 64.7 41 82.9
AL7G23400 Arabidopsis lyrata HOM05D000070 ORTHO05D003190 2.7e-09 64.7 41 82.9
AT4G29040 Arabidopsis thaliana HOM05D000070 ORTHO05D003190 2.7e-09 64.7 41 82.9
CANSAT01G0767 Cannabis sativa HOM05D000070 ORTHO05D003190 2.7e-09 64.7 40 85.0
CANSAT01G0959 Cannabis sativa HOM05D000070 ORTHO05D003190 2.7e-09 64.7 40 85.0
Carub.0007s1155 Capsella rubella HOM05D000070 ORTHO05D003190 2.7e-09 64.7 41 82.9
CARHR236780 Cardamine hirsuta HOM05D000070 ORTHO05D003190 2.7e-09 64.7 41 82.9
Thhalv10026925m.g Eutrema salsugineum HOM05D000070 ORTHO05D003190 2.7e-09 64.7 41 82.9
Glyma.03G170600 Glycine max HOM05D000070 ORTHO05D003190 2.7e-09 64.7 40 85.0
Glyma.10G043000 Glycine max HOM05D000070 ORTHO05D003190 2.7e-09 64.7 48 72.9
Glyma.19G171700 Glycine max HOM05D000070 ORTHO05D003190 2.7e-09 64.7 40 85.0
Lj1g0008600 Lotus japonicus HOM05D000070 ORTHO05D003190 2.7e-09 64.7 40 85.0
Lj5g0018311 Lotus japonicus HOM05D000070 ORTHO05D003190 2.7e-09 64.7 40 85.0
Phvul.001G168800 Phaseolus vulgaris HOM05D000070 ORTHO05D003190 2.7e-09 64.7 40 85.0
VMungo1383G0522 Vigna mungo HOM05D000070 ORTHO05D003190 2.7e-09 64.7 40 85.0
Glyma.13G130400 Glycine max HOM05D000070 ORTHO05D003190 4.6e-09 63.9 48 72.9
Carub.0003s3444 Capsella rubella HOM05D000070 ORTHO05D003190 6.0e-09 63.5 41 80.5
THA.LOC104804026 Tarenaya hassleriana HOM05D000070 ORTHO05D003190 6.0e-09 63.5 48 75.0
Aa31LG8G17100 Aethionema arabicum HOM05D000070 ORTHO05D003190 7.8e-09 63.2 44 75.0
AT2G20140 Arabidopsis thaliana HOM05D000070 ORTHO05D003190 7.8e-09 63.2 41 80.5
Phvul.007G156500 Phaseolus vulgaris HOM05D000070 ORTHO05D003190 7.8e-09 63.2 48 70.8
Sp7g26990 Schrenkiella parvula HOM05D000070 ORTHO05D003190 7.8e-09 63.2 41 80.5
VMungo0720G2228 Vigna mungo HOM05D000070 ORTHO05D003190 7.8e-09 63.2 48 70.8
Duzib211G0279 Durio zibethinus HOM05D000070 ORTHO05D003190 1.0e-08 62.8 42 78.6
COL.COLO4_35742 Corchorus olitorius HOM05D000070 ORTHO05D003190 1.3e-08 62.4 40 82.5
COL.COLO4_35744 Corchorus olitorius HOM05D000070 ORTHO05D003190 1.3e-08 62.4 40 82.5
Duzib133G0232 Durio zibethinus HOM05D000070 ORTHO05D003190 1.3e-08 62.4 40 82.5
Duzib138G1446 Durio zibethinus HOM05D000070 ORTHO05D003190 1.3e-08 62.4 40 82.5
MD05G1182100 Malus domestica HOM05D000070 ORTHO05D003190 1.3e-08 62.4 40 82.5
MD10G1170400 Malus domestica HOM05D000070 ORTHO05D003190 1.3e-08 62.4 40 82.5
Prupe.8G208900 Prunus persica HOM05D000070 ORTHO05D003190 1.3e-08 62.4 40 82.5
RcHm_v2.0_Chr6g0285461 Rosa chinensis HOM05D000070 ORTHO05D003190 1.3e-08 62.4 40 82.5
BcaC09g51684 Brassica carinata HOM05D000070 ORTHO05D003190 3.0e-08 61.2 41 75.6
BcaNung01336 Brassica carinata HOM05D000070 ORTHO05D003190 3.0e-08 61.2 41 75.6
A01p08950 Brassica napus HOM05D000070 ORTHO05D003190 3.0e-08 61.2 41 75.6
C01p10490 Brassica napus HOM05D000070 ORTHO05D003190 3.0e-08 61.2 41 75.6
BraA01t00841Z Brassica rapa HOM05D000070 ORTHO05D003190 3.0e-08 61.2 41 75.6
FvH4_2g19750 Fragaria vesca HOM05D000070 ORTHO05D003190 3.0e-08 61.2 40 80.0
FAN15G1242 Fragaria x ananassa HOM05D000070 ORTHO05D003190 3.0e-08 61.2 40 80.0
FAN24G0177 Fragaria x ananassa HOM05D000070 ORTHO05D003190 3.0e-08 61.2 40 80.0
FAN20G1037 Fragaria x ananassa HOM05D000070 ORTHO05D003190 3.9e-08 60.8 40 80.0
Lalb_Chr20g0113331 Lupinus albus HOM05D000070 ORTHO05D015155 5.1e-08 60.5 42 73.8
Manes.12G043700 Manihot esculenta HOM05D000070 ORTHO05D003190 5.1e-08 60.5 40 80.0
QL09p044323 Quercus lobata HOM05D000070 ORTHO05D003190 6.6e-08 60.1 40 77.5
BcaNung00449 Brassica carinata HOM05D000070 ORTHO05D003190 8.6e-08 59.7 40 77.5
BcaNung02887 Brassica carinata HOM05D000070 ORTHO05D003190 8.6e-08 59.7 40 77.5
C07p56640 Brassica napus HOM05D000070 ORTHO05D003190 8.6e-08 59.7 40 77.5
BolC7t46145H Brassica oleracea HOM05D000070 ORTHO05D003190 8.6e-08 59.7 40 77.5
Haze_22121 Corylus avellana HOM05D000070 ORTHO05D003190 8.6e-08 59.7 40 80.0
AL3G22430 Arabidopsis lyrata HOM05D000315 ORTHO05D019721 1.1e-07 59.3 78 51.3
CiPaw.03G152800 Carya illinoinensis HOM05D000070 ORTHO05D003190 1.1e-07 59.3 40 80.0
Thhalv10001985m.g Eutrema salsugineum HOM05D000070 ORTHO05D003190 1.1e-07 59.3 41 75.6
Gohir.A08G193300 Gossypium hirsutum HOM05D000070 ORTHO05D003190 1.1e-07 59.3 40 80.0
Gohir.D08G211300 Gossypium hirsutum HOM05D000070 ORTHO05D003190 1.1e-07 59.3 40 80.0
Gorai.004G224000 Gossypium raimondii HOM05D000070 ORTHO05D003190 1.1e-07 59.3 40 80.0
RcHm_v2.0_Chr5g0070701 Rosa chinensis HOM05D000070 ORTHO05D015155 1.1e-07 59.3 40 80.0
BcaC07g38373 Brassica carinata HOM05D000070 ORTHO05D003190 1.5e-07 58.9 41 80.5
C08p11250 Brassica napus HOM05D000070 ORTHO05D003190 1.5e-07 58.9 41 80.5
Cpa.g.sc8.197 Carica papaya HOM05D000070 ORTHO05D003190 1.5e-07 58.9 42 76.2
Cfa002524 Carpinus fangiana HOM05D000070 ORTHO05D003190 1.5e-07 58.9 40 80.0
CiPaw.04G108100 Carya illinoinensis HOM05D000070 ORTHO05D003190 1.5e-07 58.9 40 80.0
CiPaw.07G189900 Carya illinoinensis HOM05D000070 ORTHO05D003190 1.5e-07 58.9 52 65.4
Duzib187G1350 Durio zibethinus HOM05D000070 ORTHO05D003190 1.5e-07 58.9 40 80.0
Nitab4.5_0001511g0030 Nicotiana tabacum HOM05D000070 ORTHO05D003190 1.5e-07 58.9 40 82.5
Nitab4.5_0002085g0160 Nicotiana tabacum HOM05D000070 ORTHO05D003190 1.5e-07 58.9 40 82.5
Nitab4.5_0006211g0040 Nicotiana tabacum HOM05D000070 ORTHO05D003190 1.5e-07 58.9 40 82.5
Nitab4.5_0028387g0010 Nicotiana tabacum HOM05D000070 ORTHO05D015155 1.5e-07 58.9 40 82.5
Peaxi162Scf00052g01813 Petunia axillaris HOM05D000070 ORTHO05D003190 1.5e-07 58.9 40 82.5
Cc01_g17400 Coffea canephora HOM05D000070 ORTHO05D003190 1.9e-07 58.5 40 82.5
Hma1.2p1_1858F.1_g305530 Hydrangea macrophylla HOM05D000070 ORTHO05D003190 1.9e-07 58.5 40 82.5
Lsat_1_v5_gn_9_11120 Lactuca sativa HOM05D000070 ORTHO05D003190 1.9e-07 58.5 40 82.5
Lj1A81T58 Lonicera japonica HOM05D000070 ORTHO05D003190 1.9e-07 58.5 40 82.5
PGSC0003DMG400015804 Solanum tuberosum HOM05D000070 ORTHO05D003190 1.9e-07 58.5 40 82.5
SGA_v2.0_scaffold8G04665 Striga asiatica HOM05D000070 ORTHO05D003190 1.9e-07 58.5 41 78.0
GSVIVG01028520001 Vitis vinifera HOM05D000070 ORTHO05D003190 1.9e-07 58.5 40 82.5
DCAR_004703 Daucus carota HOM05D000070 ORTHO05D003190 2.5e-07 58.2 40 77.5
Eucgr.H00817 Eucalyptus grandis HOM05D000070 ORTHO05D003190 2.5e-07 58.2 40 77.5
HanXRQChr15g0468451 Helianthus annuus HOM05D000070 ORTHO05D003190 2.5e-07 58.2 40 82.5
PGR044G2074 Punica granatum HOM05D000070 ORTHO05D003190 2.5e-07 58.2 40 77.5
PGR083G0470 Punica granatum HOM05D000070 ORTHO05D003190 2.5e-07 58.2 40 77.5
Sc17g0002490 Simmondsia chinensis HOM05D000070 ORTHO05D003190 2.5e-07 58.2 51 62.7
Solyc06g083620.3 Solanum lycopersicum HOM05D000070 ORTHO05D003190 2.5e-07 58.2 40 80.0
Sopen06g035010 Solanum pennellii HOM05D000070 ORTHO05D003190 2.5e-07 58.2 40 80.0
PGSC0003DMG400020086 Solanum tuberosum HOM05D000070 ORTHO05D003190 2.5e-07 58.2 40 80.0
Thecc.01G232300 Theobroma cacao HOM05D000070 ORTHO05D003190 2.5e-07 58.2 40 77.5
Atru.chr5.1932 Acer truncatum HOM05D000070 ORTHO05D003190 3.3e-07 57.8 40 77.5
A08p19790 Brassica napus HOM05D000070 ORTHO05D003190 3.3e-07 57.8 41 78.0
BolC8t48799H Brassica oleracea HOM05D000070 ORTHO05D003190 3.3e-07 57.8 41 78.0
BraA08t33939Z Brassica rapa HOM05D000070 ORTHO05D003190 3.3e-07 57.8 41 78.0
CAN.G771.53 Capsicum annuum HOM05D000070 ORTHO05D003190 3.3e-07 57.8 40 82.5
Ciclev10020143m.g Citrus clementina HOM05D000070 ORTHO05D003190 3.3e-07 57.8 40 77.5
DCAR_018545 Daucus carota HOM05D000070 ORTHO05D003190 3.3e-07 57.8 40 77.5
Nn1g03101 Nelumbo nucifera HOM05D000070 ORTHO05D003190 3.3e-07 57.8 40 82.5
Nn3g19876 Nelumbo nucifera HOM05D000070 ORTHO05D003190 3.3e-07 57.8 40 82.5
unitig_26.g10116 Utricularia gibba HOM05D000070 ORTHO05D003190 3.3e-07 57.8 41 78.0
Actinidia23743 Actinidia chinensis HOM05D000070 ORTHO05D003190 4.3e-07 57.4 40 80.0
BcaB03g12593 Brassica carinata HOM05D000070 ORTHO05D003190 4.3e-07 57.4 44 72.7
Hma1.2p1_0825F.1_g224830 Hydrangea macrophylla HOM05D000070 ORTHO05D003190 4.3e-07 57.4 40 80.0
Rhsim13G0042200 Rhododendron simsii HOM05D000070 ORTHO05D003190 4.3e-07 57.4 40 80.0
TAR365G0354 Trochodendron aralioides HOM05D000070 ORTHO05D003190 4.3e-07 57.4 40 80.0
TAR365G0468 Trochodendron aralioides HOM05D000070 ORTHO05D003190 4.3e-07 57.4 40 80.0
vmacro02735 Vaccinium macrocarpon HOM05D000070 ORTHO05D003190 4.3e-07 57.4 40 80.0
Actinidia30100 Actinidia chinensis HOM05D000070 ORTHO05D003190 5.6e-07 57.0 40 80.0
Actinidia37574 Actinidia chinensis HOM05D000070 ORTHO05D003190 5.6e-07 57.0 40 80.0
CSS0019222 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D003190 5.6e-07 57.0 40 80.0
CSS0047454 Camellia sinensis var. sinensis HOM05D000070 ORTHO05D003190 5.6e-07 57.0 40 80.0
CARHR110650 Cardamine hirsuta HOM05D000070 ORTHO05D003190 5.6e-07 57.0 41 73.2
AUR62008896 Chenopodium quinoa HOM05D000070 ORTHO05D003190 5.6e-07 57.0 40 80.0
AUR62031812 Chenopodium quinoa HOM05D000070 ORTHO05D003190 5.6e-07 57.0 40 80.0
Ca_09621_v3 Cicer arietinum L. HOM05D000070 ORTHO05D003190 5.6e-07 57.0 40 75.0
Gohir.D11G230700 Gossypium hirsutum HOM05D000070 ORTHO05D003190 5.6e-07 57.0 40 77.5
Gorai.003G066800 Gossypium raimondii HOM05D000070 ORTHO05D003190 5.6e-07 57.0 40 77.5
Lsat_1_v5_gn_5_179060 Lactuca sativa HOM05D000070 ORTHO05D003190 5.6e-07 57.0 40 80.0
Lj2C1136G3 Lonicera japonica HOM05D000070 ORTHO05D003190 5.6e-07 57.0 41 78.0
Medtr1g069105 Medicago truncatula HOM05D000070 ORTHO05D003190 5.6e-07 57.0 40 75.0
Psat6g065440 Pisum sativum HOM05D000070 ORTHO05D003190 5.6e-07 57.0 40 75.0
TPR.G10057 Trifolium pratense HOM05D000070 ORTHO05D003190 5.6e-07 57.0 40 75.0
MSTRG.18372 Avicennia marina HOM05D000070 ORTHO05D003190 7.3e-07 56.6 40 77.5
Dinv41270 Davidia involucrata HOM05D000070 ORTHO05D003190 7.3e-07 56.6 40 80.0
Lalb_Chr06g0170951 Lupinus albus HOM05D000070 ORTHO05D028413 7.3e-07 56.6 40 72.5
Potri.014G194700 Populus trichocarpa HOM05D000070 ORTHO05D003190 7.3e-07 56.6 40 75.0
SalBow4G3250 Salvia bowleyana HOM05D000070 ORTHO05D003190 7.3e-07 56.6 40 77.5
Sed0010284 Sechium edule HOM05D000070 ORTHO05D003190 7.3e-07 56.6 40 72.5
SGA_v2.0_scaffold42G16153 Striga asiatica HOM05D000070 ORTHO05D003190 7.3e-07 56.6 40 77.5
TAR362G0976 Trochodendron aralioides HOM05D000070 ORTHO05D003190 7.3e-07 56.6 40 75.0
Oeu015914.1 Olea europaea HOM05D000070 ORTHO05D015155 9.5e-07 56.2 40 77.5
QL02p097062 Quercus lobata HOM05D000070 ORTHO05D003190 9.5e-07 56.2 40 72.5
RcHm_v2.0_Chr5g0067921 Rosa chinensis HOM05D000070 ORTHO05D015155 9.5e-07 56.2 40 75.0
SalBow6G4408 Salvia bowleyana HOM05D000070 ORTHO05D003190 9.5e-07 56.2 40 77.5
MSTRG.17536 Avicennia marina HOM05D000070 ORTHO05D003190 1.2e-06 55.8 40 77.5
MSTRG.21441 Avicennia marina HOM05D000070 ORTHO05D003190 1.2e-06 55.8 40 75.0
CDE02G0898 Ceratophyllum demersum HOM05D000070 ORTHO05D003190 1.2e-06 55.8 41 75.6
CDE05G2713 Ceratophyllum demersum HOM05D000070 ORTHO05D003190 1.2e-06 55.8 41 75.6
ClCG11G012520 Citrullus lanatus HOM05D000070 ORTHO05D003190 1.2e-06 55.8 40 72.5
CsaV3_2G008010 Cucumis sativus L. HOM05D000070 ORTHO05D003190 1.2e-06 55.8 40 72.5
Dinv43030 Davidia involucrata HOM05D000070 ORTHO05D003190 1.2e-06 55.8 40 77.5
Rhsim01G0258200 Rhododendron simsii HOM05D000070 ORTHO05D003190 1.2e-06 55.8 40 75.0
Hund18373 Selenicereus undatus HOM05D000070 ORTHO05D003190 1.6e-06 55.5 40 77.5
Peaxi162Scf00499g00110 Petunia axillaris HOM05D000070 ORTHO05D003190 2.1e-06 55.1 40 72.5
Ah.08g214210 Amaranthus hybridus HOM05D000070 ORTHO05D003190 2.8e-06 54.7 41 73.2
Pp3c19_3770 Physcomitrium patens HOM05D000070 ORTHO05D003190 2.8e-06 54.7 46 65.2
THA.LOC104820054 Tarenaya hassleriana HOM05D000070 ORTHO05D003190 2.8e-06 54.7 41 75.6
Cpa.g.sc95.66 Carica papaya HOM05D000070 ORTHO05D003190 3.6e-06 54.3 40 72.5
Migut.N02249 Erythranthe guttata HOM05D000070 ORTHO05D003190 3.6e-06 54.3 39 76.9
Pp3c22_7710 Physcomitrium patens HOM05D000070 ORTHO05D003190 3.6e-06 54.3 40 72.5
RcHm_v2.0_Chr2g0132611 Rosa chinensis HOM05D000070 ORTHO05D015155 3.6e-06 54.3 40 72.5
Sed0001703 Sechium edule HOM05D000070 ORTHO05D003190 3.6e-06 54.3 40 75.0
HPP92_000140 Vanilla planifolia HOM05D000070 ORTHO05D003190 3.6e-06 54.3 40 77.5
Sed0003762 Sechium edule HOM05D000070 ORTHO05D003190 6.2e-06 53.5 40 72.5
PSO063G2438 Papaver somniferum HOM05D000070 ORTHO05D003190 8.1e-06 53.1 40 70.0
PSO782G4133 Papaver somniferum HOM05D000070 ORTHO05D003190 8.1e-06 53.1 40 70.0


User provided reference genes

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