Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 7.8e-153 543.9 302 100.0
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.8e-134 482.3 307 90.2
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 2.2e-118 429.5 304 81.9
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.1e-117 427.2 338 77.2
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 6.7e-112 407.9 344 73.0
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 4.5e-100 368.6 334 69.2
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 5.4e-93 345.1 261 78.9
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 5.0e-91 338.6 261 77.4
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 4.2e-90 335.5 280 73.2
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 7.2e-90 334.7 235 83.0
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 1.6e-89 333.6 343 59.2
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 2.1e-89 333.2 272 74.6
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 2.6e-87 326.2 344 58.1
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 3.4e-87 325.9 343 58.6
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 7.5e-87 324.7 343 57.7
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 1.2e-84 317.4 343 56.3
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 5.9e-84 315.1 343 56.9
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 1.0e-83 314.3 343 56.6
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 1.3e-83 313.9 343 57.7
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 2.9e-83 312.8 343 55.4
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 5.0e-83 312.0 343 56.0
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 1.5e-82 310.5 343 55.7
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 4.2e-82 308.9 344 54.9
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 5.6e-82 308.5 343 56.0
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 9.5e-82 307.8 343 55.7
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 1.2e-81 307.4 343 56.0
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.6e-81 307.0 324 58.3
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.1e-81 306.6 343 55.4
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 2.1e-81 306.6 343 55.4
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.8e-81 306.2 343 55.4
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 3.6e-81 305.8 343 54.2
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 4.7e-81 305.4 343 55.1
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 8.0e-81 304.7 343 55.1
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.4e-80 303.9 345 56.2
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.8e-80 303.5 339 56.6
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 1.8e-80 303.5 337 56.4
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 1.8e-80 303.5 344 54.7
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 2.3e-80 303.1 337 56.7
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 2.3e-80 303.1 342 55.6
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 2.3e-80 303.1 343 55.4
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 4.0e-80 302.4 287 62.0
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 6.8e-80 301.6 343 55.1
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 8.9e-80 301.2 343 55.1
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 2.0e-79 300.1 343 54.8
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 2.0e-79 300.1 353 54.1
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 2.0e-79 300.1 343 54.2
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 9.8e-79 297.7 343 54.2
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 2.9e-78 296.2 343 53.4
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 6.4e-78 295.0 341 55.1
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 8.3e-78 294.7 343 53.9
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 1.1e-77 294.3 348 53.4
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 1.1e-77 294.3 343 52.5
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 1.4e-77 293.9 343 52.5
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 1.8e-77 293.5 337 54.3
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 3.2e-77 292.7 343 52.8
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 5.4e-77 292.0 285 61.4
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 1.6e-76 290.4 336 53.0
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 1.6e-76 290.4 339 54.3
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 2.7e-76 289.7 317 58.0
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 4.6e-76 288.9 213 79.8
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 1.3e-75 287.3 325 54.2
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.7e-75 287.0 343 52.2
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 2.9e-75 286.2 262 63.4
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 5.0e-75 285.4 346 51.7
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 5.0e-75 285.4 343 52.2
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 1.5e-74 283.9 342 52.0
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 4.3e-74 282.3 345 52.2
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 5.6e-74 282.0 343 51.0
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 7.3e-74 281.6 343 51.0
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.6e-73 280.4 331 51.7
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 8.0e-73 278.1 339 51.3
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 5.2e-72 275.4 336 50.6
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 1.2e-71 274.2 344 51.7
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 2.0e-71 273.5 338 51.2
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 2.6e-71 273.1 343 51.6
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.3e-70 270.8 337 49.0
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.3e-70 270.8 343 50.7
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 1.7e-70 270.4 319 50.8
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.7e-70 270.4 343 50.4
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 2.2e-70 270.0 301 53.2
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 2.9e-70 269.6 319 51.1
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 2.9e-70 269.6 319 51.1
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 8.3e-70 268.1 336 49.1
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 8.3e-70 268.1 317 52.4
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 1.4e-69 267.3 319 50.2
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.4e-69 267.3 334 49.7
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 1.4e-69 267.3 343 49.9
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 2.0e-68 263.5 307 53.7
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 2.7e-68 263.1 343 49.9
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 2.7e-68 263.1 315 53.7
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 2.7e-68 263.1 272 58.1
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 4.6e-68 262.3 343 48.1
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 6.0e-68 261.9 324 50.9
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 6.0e-68 261.9 343 48.7
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 3.0e-67 259.6 341 49.9
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 1.1e-66 257.7 313 51.8
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.3e-66 256.1 321 50.5
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 7.3e-66 255.0 264 63.6
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 7.3e-66 255.0 247 58.3
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 1.2e-65 254.2 247 58.3
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 1.6e-65 253.8 287 54.0
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 2.1e-65 253.4 247 57.9
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 3.6e-65 252.7 326 49.7
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 8.1e-65 251.5 308 51.0
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.8e-64 250.4 339 49.6
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 8.9e-64 248.1 237 59.1
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 2.0e-63 246.9 325 49.5
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.0e-63 246.9 343 47.8
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 2.9e-62 243.0 312 51.3
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 2.9e-62 243.0 342 48.0
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 4.9e-62 242.3 343 48.7
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 4.9e-62 242.3 343 48.7
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 6.4e-62 241.9 343 46.9
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 8.3e-62 241.5 339 46.6
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.1e-61 239.2 342 47.7
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 7.1e-61 238.4 343 46.4
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 2.1e-60 236.9 343 47.5
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 4.6e-60 235.7 315 51.1
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 1.3e-59 234.2 314 48.1
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.3e-59 233.4 340 47.4
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.9e-58 230.3 291 50.9
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 5.6e-58 228.8 319 48.6
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 3.6e-57 226.1 344 45.6
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 4.7e-57 225.7 343 45.2
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 4.7e-57 225.7 343 45.5
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 4.7e-57 225.7 340 45.0
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 1.1e-56 224.6 392 41.3
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 2.2e-54 216.9 343 44.3
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 4.9e-54 215.7 342 44.7
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 6.4e-54 215.3 256 52.0
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 8.4e-54 214.9 343 44.0
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 1.9e-53 213.8 343 44.6
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 5.4e-53 212.2 291 47.1
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 4.6e-52 209.1 280 46.4
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 7.8e-52 208.4 337 40.9
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 1.7e-51 207.2 287 48.4
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 2.3e-51 206.8 288 45.8
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.9e-51 206.1 289 47.1
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 6.6e-51 205.3 134 84.3
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 6.2e-49 198.7 332 44.0
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 1.1e-48 198.0 264 49.6
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.4e-48 197.6 343 41.1
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 1.8e-48 197.2 290 44.8
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 2.4e-48 196.8 344 41.6
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 7.6e-47 191.8 268 44.0
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 7.6e-47 191.8 305 44.3
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 2.2e-46 190.3 341 41.1
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.4e-45 187.6 287 44.6
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 2.7e-44 183.3 320 43.1
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 6.0e-44 182.2 146 68.5
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 4.4e-39 166.0 176 55.1
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 2.9e-38 163.3 290 40.3
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 4.9e-38 162.5 307 39.7
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 3.2e-37 159.8 258 44.2
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 1.2e-36 157.9 266 41.7
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.1e-36 157.1 168 58.3
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 1.3e-33 147.9 304 35.5
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.3e-33 147.9 264 42.0
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.4e-29 134.4 248 40.7
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 3.2e-29 133.3 262 38.9
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 1.5e-26 124.4 280 36.4
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 1.5e-26 124.4 201 44.8
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 2.8e-25 120.2 312 31.7
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 4.8e-25 119.4 166 47.6
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 1.3e-22 111.3 266 36.5
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 1.3e-19 101.3 256 35.2
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 1.3e-19 101.3 256 35.2
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 6.7e-19 99.0 57 98.2
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 8.7e-19 98.6 343 29.7
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 6.3e-17 92.4 127 52.0
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 1.3e-14 84.7 162 37.7
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 1.9e-13 80.9 54 79.6
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 1.6e-12 77.8 111 48.6
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 7.4e-10 68.9 266 30.5
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 1.0e-06 58.5 125 40.0
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 1.3e-06 58.2 131 39.7


User provided reference genes

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