Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 7.2e-293 1010.0 560 100.0
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 2.5e-229 798.9 563 76.9
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 2.7e-207 725.7 566 70.0
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 5.7e-189 664.8 554 68.8
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 6.3e-188 661.4 554 68.2
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 5.3e-187 658.3 561 70.4
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 5.3e-187 658.3 570 67.2
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 2.6e-186 656.0 555 67.7
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 2.6e-186 656.0 560 70.0
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 7.6e-186 654.4 555 67.6
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 7.6e-186 654.4 555 67.6
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.4e-184 650.2 554 69.1
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 1.8e-163 580.1 569 60.3
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 9.1e-155 551.2 550 58.5
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 5.6e-128 462.2 479 54.9
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 4.1e-123 446.0 499 53.9
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 9.3e-99 365.2 483 43.5
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 9.3e-99 365.2 486 44.0
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 1.6e-95 354.4 483 42.2
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 4.8e-95 352.8 498 41.8
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 2.4e-94 350.5 481 42.6
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 3.1e-94 350.1 493 43.0
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 7.6e-93 345.5 482 42.5
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 6.4e-92 342.4 474 44.1
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 6.4e-92 342.4 482 42.3
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 1.1e-91 341.7 475 43.4
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 1.1e-91 341.7 475 43.4
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 4.2e-91 339.7 482 42.5
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 5.4e-91 339.3 477 41.3
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 7.1e-91 339.0 486 42.6
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 1.5e-88 331.3 479 39.9
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 4.3e-88 329.7 484 40.7
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 3.7e-87 326.6 487 42.7
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 4.8e-87 326.2 484 40.1
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 1.4e-86 324.7 521 39.7
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 2.4e-86 323.9 493 42.4
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 6.9e-86 322.4 484 39.9
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.2e-85 321.6 485 40.0
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 1.2e-85 321.6 489 41.3
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 2.6e-85 320.5 507 42.4
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 2.6e-85 320.5 514 40.1
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 2.6e-85 320.5 494 41.3
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 2.2e-84 317.4 497 39.6
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 2.9e-84 317.0 507 40.0
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 2.9e-84 317.0 485 41.4
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 6.4e-84 315.8 497 38.8
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 4.2e-83 313.2 489 38.0
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 5.5e-83 312.8 497 39.2
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 7.1e-83 312.4 431 40.6
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 9.3e-83 312.0 463 41.3
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 1.6e-82 311.2 494 38.5
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 2.1e-82 310.8 497 39.4
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 4.6e-82 309.7 476 39.9
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 6.0e-82 309.3 507 40.2
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 3.9e-81 306.6 498 39.8
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 5.1e-81 306.2 520 39.4
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 6.7e-81 305.8 553 36.2
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 6.7e-81 305.8 446 40.8
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 3.3e-80 303.5 481 40.3
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 4.3e-80 303.1 475 38.5
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 4.3e-80 303.1 527 37.2
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 5.6e-80 302.8 477 38.8
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 2.1e-79 300.8 472 39.6
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 4.8e-79 299.7 509 37.5
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 6.2e-79 299.3 467 38.8
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 8.2e-79 298.9 400 42.8
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.4e-78 298.1 455 37.1
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 1.4e-78 298.1 533 39.0
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 3.1e-78 297.0 497 38.6
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 4.0e-78 296.6 414 41.3
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 6.9e-78 295.8 494 38.9
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 9.0e-78 295.4 480 37.3
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 1.2e-77 295.0 486 39.7
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 3.4e-77 293.5 455 39.6
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 5.8e-77 292.7 544 35.3
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 5.8e-77 292.7 549 38.1
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 1.3e-76 291.6 498 38.8
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 3.8e-76 290.0 494 39.1
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 6.5e-76 289.3 514 38.1
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 8.4e-76 288.9 521 36.5
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.5e-75 287.3 425 40.7
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 9.3e-75 285.4 472 37.3
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 9.3e-75 285.4 446 38.3
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 1.6e-74 284.6 519 36.2
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 1.0e-73 282.0 418 38.0
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 1.3e-73 281.6 409 38.9
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.3e-73 281.6 493 37.3
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 3.9e-73 280.0 455 37.6
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 6.7e-73 279.3 463 39.1
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.7e-72 276.2 538 34.8
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 7.4e-72 275.8 503 37.2
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 9.7e-72 275.4 481 38.5
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 1.6e-71 274.6 455 38.2
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 2.8e-71 273.9 525 34.9
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 1.1e-70 271.9 454 35.5
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 9.0e-70 268.9 481 36.6
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 9.0e-70 268.9 441 39.0
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 5.9e-69 266.2 481 35.8
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 7.7e-69 265.8 506 34.4
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 2.2e-68 264.2 487 33.7
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 5.0e-68 263.1 510 35.7
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 3.2e-67 260.4 393 40.2
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.5e-67 259.6 425 37.9
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 5.9e-61 239.6 498 33.5
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 1.2e-58 231.9 456 33.8
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 1.6e-58 231.5 342 37.1
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 2.7e-58 230.7 463 32.0
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 2.8e-55 220.7 421 37.3
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 1.8e-54 218.0 486 36.2
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 3.5e-53 213.8 379 38.0
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 2.9e-52 210.7 478 35.8
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 2.9e-52 210.7 478 35.8
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 2.9e-52 210.7 478 35.8
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 4.2e-51 206.8 478 35.4
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 4.2e-51 206.8 478 35.4
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.1e-50 204.5 228 43.9
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 4.7e-42 176.8 324 39.8
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 3.0e-41 174.1 311 39.5
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 4.4e-40 170.2 319 39.8
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 9.7e-40 169.1 353 38.5
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 8.3e-39 166.0 350 35.4
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 3.1e-38 164.1 163 44.2
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.7e-37 161.0 241 35.7
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.6e-32 144.4 291 38.8
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 3.5e-29 134.0 134 44.0
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 1.0e-28 132.5 325 32.0
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 1.5e-27 128.6 355 32.4
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 9.5e-27 125.9 285 30.9
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 9.5e-27 125.9 285 30.9
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 6.1e-26 123.2 240 30.8
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.8e-25 121.7 213 34.7
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 1.5e-24 118.6 279 31.2
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 1.3e-20 105.5 375 26.9
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.7e-20 105.1 259 29.7
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 3.9e-20 104.0 369 27.9
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 6.1e-18 96.7 156 38.5
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 1.3e-15 89.0 130 35.4
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 1.1e-14 85.9 331 23.9
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 3.2e-14 84.3 415 23.9
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.6e-13 82.0 85 41.2
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.6e-13 82.0 85 41.2
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 6.6e-12 76.6 153 30.7
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 4.4e-08 63.9 123 40.7


User provided reference genes

Program Settings