Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G36800 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 3.4e-132 474.9 227 100.0
AL817U10010 Arabidopsis lyrata HOM05D004427 ORTHO05D005381 7.0e-130 467.2 227 98.2
AT5G60190 Arabidopsis thaliana HOM05D004427 ORTHO05D005381 1.9e-122 442.6 227 92.5
CARHR273870 Cardamine hirsuta HOM05D004427 ORTHO05D005381 2.3e-112 409.1 227 83.3
BcaB01g04643 Brassica carinata HOM05D004427 ORTHO05D005381 1.5e-111 406.4 222 83.3
BraA03t10444Z Brassica rapa HOM05D004427 ORTHO05D005381 5.6e-111 404.4 222 83.3
Sp6g21820 Schrenkiella parvula HOM05D004427 ORTHO05D005381 2.1e-110 402.5 222 83.3
A03p11310 Brassica napus HOM05D004427 ORTHO05D005381 2.8e-110 402.1 222 83.3
Carub.0008s2094 Capsella rubella HOM05D004427 ORTHO05D005381 6.8e-109 397.5 227 82.4
BolC3t13765H Brassica oleracea HOM05D004427 ORTHO05D005381 5.8e-108 394.4 222 80.2
C03p13030 Brassica napus HOM05D004427 ORTHO05D005381 2.2e-107 392.5 222 80.2
A10p17340 Brassica napus HOM05D004427 ORTHO05D005381 3.3e-103 378.6 222 78.4
BraA10t43818Z Brassica rapa HOM05D004427 ORTHO05D005381 7.3e-103 377.5 225 77.8
BcaB08g36313 Brassica carinata HOM05D004427 ORTHO05D005381 1.6e-102 376.3 224 79.5
Thhalv10014584m.g Eutrema salsugineum HOM05D004427 ORTHO05D005381 4.4e-100 368.2 224 79.0
Aa31LG1G12350 Aethionema arabicum HOM05D004427 ORTHO05D005381 4.2e-98 361.7 222 75.2
THA.LOC104799482 Tarenaya hassleriana HOM05D004427 ORTHO05D005381 1.4e-85 320.1 222 65.3
BcaC04g19664 Brassica carinata HOM05D004427 ORTHO05D005381 1.7e-83 313.2 222 67.6
ClCG02G020830 Citrullus lanatus HOM05D004427 ORTHO05D005381 4.0e-77 292.0 227 60.8
Haze_23944 Corylus avellana HOM05D004427 ORTHO05D005381 1.1e-74 283.9 226 60.6
Cfa011378 Carpinus fangiana HOM05D004427 ORTHO05D005381 7.1e-74 281.2 226 60.2
COL.COLO4_25263 Corchorus olitorius HOM05D004427 ORTHO05D005381 9.3e-74 280.8 227 59.0
CsaV3_6G021480 Cucumis sativus L. HOM05D004427 ORTHO05D005381 4.6e-73 278.5 227 58.6
MELO3C025732.2 Cucumis melo HOM05D004427 ORTHO05D005381 7.9e-73 277.7 227 59.0
Gorai.009G079500 Gossypium raimondii HOM05D004427 ORTHO05D005381 1.0e-72 277.3 227 58.1
Sopen05g001320 Solanum pennellii HOM05D004427 ORTHO05D005381 1.0e-72 277.3 222 56.3
TWI75G0497 Tripterygium wilfordii HOM05D004427 ORTHO05D005381 1.0e-72 277.3 226 58.4
Lj1C183T3 Lonicera japonica HOM05D004427 ORTHO05D005381 1.8e-72 276.6 220 56.8
Sed0015128 Sechium edule HOM05D004427 ORTHO05D005381 1.8e-72 276.6 223 58.7
Gohir.D05G078000 Gossypium hirsutum HOM05D004427 ORTHO05D005381 2.3e-72 276.2 227 57.7
Gohir.A05G075200 Gossypium hirsutum HOM05D004427 ORTHO05D005381 3.0e-72 275.8 227 56.8
vmacro14479 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 5.1e-72 275.0 223 58.3
Ca_19237_v3 Cicer arietinum L. HOM05D004427 ORTHO05D005381 8.7e-72 274.2 226 57.5
Lj1C183T1 Lonicera japonica HOM05D004427 ORTHO05D005381 8.7e-72 274.2 220 58.2
PGSC0003DMG400013475 Solanum tuberosum HOM05D004427 ORTHO05D005381 8.7e-72 274.2 222 55.0
Eucgr.J00959 Eucalyptus grandis HOM05D004427 ORTHO05D005381 1.9e-71 273.1 229 56.3
TPR.G2989 Trifolium pratense HOM05D004427 ORTHO05D005381 2.5e-71 272.7 226 57.5
Rhsim01G0221200 Rhododendron simsii HOM05D004427 ORTHO05D005381 5.7e-71 271.6 223 57.4
C09p52680 Brassica napus HOM05D004427 ORTHO05D005381 7.4e-71 271.2 168 72.6
BolC9t58136H Brassica oleracea HOM05D004427 ORTHO05D005381 7.4e-71 271.2 168 72.6
AUR62037165 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.6e-70 270.0 224 56.7
ECA233G4215 Erigeron canadensis HOM05D004427 ORTHO05D005381 2.1e-70 269.6 220 57.7
QL01p036593 Quercus lobata HOM05D004427 ORTHO05D005381 2.8e-70 269.2 225 56.4
Dinv10838 Davidia involucrata HOM05D004427 ORTHO05D005381 3.7e-70 268.9 222 56.8
Hma1.2p1_2156F.1_g315430 Hydrangea macrophylla HOM05D004427 ORTHO05D005381 3.7e-70 268.9 223 57.4
Lalb_Chr19g0137481 Lupinus albus HOM05D004427 ORTHO05D005381 4.8e-70 268.5 231 55.8
Ciclev10029217m.g Citrus clementina HOM05D004427 ORTHO05D005381 6.2e-70 268.1 227 56.4
CiPaw.14G077000 Carya illinoinensis HOM05D004427 ORTHO05D005381 1.1e-69 267.3 229 56.8
Psat7g222000 Pisum sativum HOM05D004427 ORTHO05D005381 1.1e-69 267.3 231 55.8
PGR119G1466 Punica granatum HOM05D004427 ORTHO05D005381 4.1e-69 265.4 225 58.2
Duzib168G1361 Durio zibethinus HOM05D004427 ORTHO05D005381 5.3e-69 265.0 227 57.3
Medtr4g061080 Medicago truncatula HOM05D004427 ORTHO05D005381 5.3e-69 265.0 232 55.6
MSTRG.21151 Avicennia marina HOM05D004427 ORTHO05D005381 6.9e-69 264.6 215 56.3
AUR62025117 Chenopodium quinoa HOM05D004427 ORTHO05D005381 6.9e-69 264.6 224 55.8
EL10Ac9g22377 Beta vulgaris HOM05D004427 ORTHO05D005381 9.0e-69 264.2 225 57.3
Manes.04G026600 Manihot esculenta HOM05D004427 ORTHO05D005381 3.4e-68 262.3 224 56.7
GSVIVG01025117001 Vitis vinifera HOM05D004427 ORTHO05D005381 3.4e-68 262.3 223 57.0
Aqoxy4G03193 Aquilegia oxysepala HOM05D004427 ORTHO05D005381 4.5e-68 261.9 225 55.6
Lj3g0007721 Lotus japonicus HOM05D004427 ORTHO05D005381 5.8e-68 261.5 228 55.3
TAR623G1453 Trochodendron aralioides HOM05D004427 ORTHO05D005381 7.6e-68 261.2 227 55.5
CAN.G765.37 Capsicum annuum HOM05D004427 ORTHO05D005381 1.7e-67 260.0 223 52.9
HanXRQChr02g0051371 Helianthus annuus HOM05D004427 ORTHO05D005381 1.7e-67 260.0 220 55.9
Glyma.12G072600 Glycine max HOM05D004427 ORTHO05D005381 5.0e-67 258.5 226 55.8
Oeu062268.1 Olea europaea HOM05D004427 ORTHO05D005381 6.5e-67 258.1 223 55.2
CSS0010329 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.1e-66 257.3 227 55.1
CAN.G354.26 Capsicum annuum HOM05D004427 ORTHO05D005381 1.1e-66 257.3 223 52.9
RcHm_v2.0_Chr5g0061241 Rosa chinensis HOM05D004427 ORTHO05D005381 2.5e-66 256.1 226 58.8
Thecc.09G261900 Theobroma cacao HOM05D004427 ORTHO05D005381 2.5e-66 256.1 227 55.9
Duzib150G0661 Durio zibethinus HOM05D004427 ORTHO05D005381 3.2e-66 255.8 227 54.6
CANSAT54G0683 Cannabis sativa HOM05D004427 ORTHO05D005381 2.1e-65 253.1 229 53.7
arahy.Tifrunner.gnm1.ann1.T6X9B2 Arachis hypogaea HOM05D004427 ORTHO05D005381 6.1e-65 251.5 228 55.3
Nitab4.5_0000100g0070 Nicotiana tabacum HOM05D004427 ORTHO05D005381 6.1e-65 251.5 200 55.0
Nitab4.5_0000607g0030 Nicotiana tabacum HOM05D004427 ORTHO05D005381 7.9e-65 251.1 201 55.7
arahy.Tifrunner.gnm1.ann1.JL7YN4 Arachis hypogaea HOM05D004427 ORTHO05D005381 1.0e-64 250.8 228 55.7
Nn2g10653 Nelumbo nucifera HOM05D004427 ORTHO05D005381 1.0e-64 250.8 227 53.3
Ah.02g113850 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.3e-64 250.4 223 53.8
Phvul.011G071700 Phaseolus vulgaris HOM05D004427 ORTHO05D005381 2.3e-64 249.6 220 53.6
Cc01_g11690 Coffea canephora HOM05D004427 ORTHO05D005381 3.0e-64 249.2 215 50.7
PSO210G5092 Papaver somniferum HOM05D004427 ORTHO05D005381 3.0e-64 249.2 219 53.4
VMungo1127G1062 Vigna mungo HOM05D004427 ORTHO05D005381 8.7e-64 247.7 226 52.7
FAN16G3079 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.1e-63 247.3 228 57.9
FvH4_3g33710 Fragaria vesca HOM05D004427 ORTHO05D005381 1.5e-63 246.9 228 57.0
FAN25G0902 Fragaria x ananassa HOM05D004427 ORTHO05D005381 3.3e-63 245.7 228 57.0
Lsat_1_v5_gn_6_24041 Lactuca sativa HOM05D004427 ORTHO05D005381 4.3e-63 245.4 218 54.1
FAN11G1819 Fragaria x ananassa HOM05D004427 ORTHO05D005381 1.6e-62 243.4 228 57.0
FAN21G1733 Fragaria x ananassa HOM05D004427 ORTHO05D005381 2.8e-62 242.7 228 56.6
MD11G1123000 Malus domestica HOM05D004427 ORTHO05D005381 4.1e-61 238.8 225 55.6
unitig_0.g1522 Utricularia gibba HOM05D004427 ORTHO05D005381 4.1e-61 238.8 223 46.6
CSS0042497 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.3e-61 238.4 223 52.0
Migut.N02630 Erythranthe guttata HOM05D004427 ORTHO05D005381 5.3e-61 238.4 224 51.8
Peaxi162Scf00155g00071 Petunia axillaris HOM05D004427 ORTHO05D005381 6.9e-61 238.0 204 52.9
Prupe.6G092400 Prunus persica HOM05D004427 ORTHO05D005381 2.6e-60 236.1 225 52.9
CSS0013146 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 5.9e-60 235.0 227 50.7
MD09G1211300 Malus domestica HOM05D004427 ORTHO05D005381 1.9e-58 229.9 225 54.7
SGA_v2.0_scaffold80G25743 Striga asiatica HOM05D004427 ORTHO05D005381 2.5e-58 229.6 225 51.6
CSS0008575 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 9.7e-55 217.6 184 55.4
PSO210G2821 Papaver somniferum HOM05D004427 ORTHO05D005381 1.7e-54 216.9 227 49.8
ATR0069G023 Amborella trichopoda HOM05D004427 ORTHO05D005381 1.0e-51 207.6 224 46.0
SHI06027 Sapria himalayana HOM05D004427 ORTHO05D005381 5.5e-50 201.8 221 50.7
QL03p001209 Quercus lobata HOM05D004427 ORTHO05D005381 7.2e-50 201.4 250 41.6
CSS0048170 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.2e-49 200.7 217 47.5
SEGI_39191 Sequoiadendron giganteum HOM05D004427 ORTHO05D005381 2.6e-47 193.0 222 45.5
Sabra13G0002300 Salix brachista HOM05D004427 ORTHO05D005381 3.5e-44 182.6 243 41.6
AagrBONN_evm.TU.Sc2ySwM_344.2535 Anthoceros agrestis HOM05D004427 ORTHO05D005381 5.9e-44 181.8 226 42.0
Potri.013G002700 Populus trichocarpa HOM05D004427 ORTHO05D005381 1.0e-43 181.0 243 42.0
QL01p000714 Quercus lobata HOM05D004427 ORTHO05D005381 1.7e-43 180.3 238 39.9
TAR629G2862 Trochodendron aralioides HOM05D004427 ORTHO05D005381 6.5e-43 178.3 243 38.3
TAR371G1244 Trochodendron aralioides HOM05D004427 ORTHO05D005381 5.5e-42 175.3 255 36.9
Mapoly0009s0037 Marchantia polymorpha HOM05D004427 ORTHO05D005381 1.2e-41 174.1 187 43.3
Os12g0102350 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 2.7e-41 172.9 230 41.3
Sc06g0007950 Simmondsia chinensis HOM05D004427 ORTHO05D005381 8.0e-41 171.4 150 55.3
TAR376G0174 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.8e-40 170.2 253 36.4
Os11g0102700 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 4.0e-40 169.1 231 41.6
Ah.02g123640 Amaranthus hybridus HOM05D004427 ORTHO05D005381 6.7e-40 168.3 229 37.6
Zm00001eb413910 Zea mays HOM05D004427 ORTHO05D005381 6.7e-40 168.3 230 40.0
TAR371G1167 Trochodendron aralioides HOM05D004427 ORTHO05D005381 1.1e-39 167.5 230 38.3
Solyc05g005310.3 Solanum lycopersicum HOM05D004427 ORTHO05D005381 4.4e-39 165.6 146 49.3
DCAR_002673 Daucus carota HOM05D004427 ORTHO05D005381 1.3e-38 164.1 226 37.6
EL10Ac8g19614 Beta vulgaris HOM05D004427 ORTHO05D005381 2.8e-38 162.9 270 33.7
AUR62003115 Chenopodium quinoa HOM05D004427 ORTHO05D005381 4.8e-38 162.2 202 42.1
vmacro14781 Vaccinium macrocarpon HOM05D004427 ORTHO05D005381 2.4e-37 159.8 227 36.1
SMO367G1171 Selaginella moellendorffii HOM05D002435 ORTHO05D002550 1.6e-36 157.1 185 42.2
Hund22380 Selenicereus undatus HOM05D004427 ORTHO05D005381 3.5e-36 156.0 227 35.2
Ah.03g139880 Amaranthus hybridus HOM05D004427 ORTHO05D005381 5.9e-36 155.2 264 33.0
EL10Ac5g12984 Beta vulgaris HOM05D004427 ORTHO05D005381 5.9e-36 155.2 241 35.3
Pp3c21_14830 Physcomitrium patens HOM05D004427 ORTHO05D005381 8.5e-35 151.4 239 34.3
Ah.02g123630 Amaranthus hybridus HOM05D004427 ORTHO05D005381 1.5e-34 150.6 264 33.0
EL10Ac9g22643 Beta vulgaris HOM05D004427 ORTHO05D005381 1.5e-34 150.6 262 32.1
Lj3A845T93 Lonicera japonica HOM05D004427 ORTHO05D005381 1.9e-34 150.2 215 39.1
DCAR_026152 Daucus carota HOM05D004427 ORTHO05D005381 1.4e-32 144.1 228 36.0
MCO07G761 Micromonas commoda HOM05D004427 ORTHO05D005381 1.8e-32 143.7 226 34.1
CSS0032605 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 3.0e-32 142.9 222 37.8
Prupe.1G350400 Prunus persica HOM05D004427 ORTHO05D005381 8.8e-32 141.4 151 44.4
Cre01.g055050 Chlamydomonas reinhardtii HOM05D004427 ORTHO05D005381 5.7e-31 138.7 213 35.7
AUR62032911 Chenopodium quinoa HOM05D004427 ORTHO05D005381 9.8e-31 137.9 255 32.9
CDE04G2448 Ceratophyllum demersum HOM05D004427 ORTHO05D005381 1.3e-30 137.5 156 43.6
DCAR_012615 Daucus carota HOM05D004427 ORTHO05D005381 3.7e-30 136.0 255 33.7
CSS0019084 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 1.4e-29 134.0 223 36.8
RcHm_v2.0_Chr4g0447061 Rosa chinensis HOM05D004427 ORTHO05D005381 1.4e-29 134.0 140 45.0
MD00G1127100 Malus domestica HOM05D004427 ORTHO05D005381 3.1e-29 132.9 150 44.0
CBR_g4323 Chara braunii HOM05D004427 ORTHO05D005381 5.4e-29 132.1 179 39.1
CSS0026652 Camellia sinensis var. sinensis HOM05D004427 ORTHO05D005381 2.0e-28 130.2 223 36.3
FvH4_4g37251 Fragaria vesca HOM05D004427 ORTHO05D005381 5.9e-28 128.6 139 43.2
Os12g0127600 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 5.9e-28 128.6 174 38.5
Actinidia09505 Actinidia chinensis HOM05D004427 ORTHO05D005381 1.5e-26 124.0 143 44.1
Lj1C183G2 Lonicera japonica HOM05D004427 ORTHO05D005381 4.2e-26 122.5 102 52.9
FvH4_6g48790 Fragaria vesca HOM05D004427 ORTHO05D005381 1.2e-25 120.9 311 27.3
CAN.G682.5 Capsicum annuum HOM05D004427 ORTHO05D005381 2.1e-25 120.2 110 44.5
FAN02G3329 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.7e-25 119.0 271 29.2
FAN05G2706 Fragaria x ananassa HOM05D004427 ORTHO05D005381 4.0e-24 115.9 140 42.1
RcHm_v2.0_Chr4g0387651 Rosa chinensis HOM05D028185 ORTHO05D025555 2.6e-23 113.2 152 40.1
FAN12G0369 Fragaria x ananassa HOM05D028185 ORTHO05D025555 7.5e-23 111.7 143 39.2
FAN17G0248 Fragaria x ananassa HOM05D004427 ORTHO05D025555 1.7e-22 110.5 143 39.9
Os12g0103580 Oryza sativa ssp. japonica HOM05D004427 ORTHO05D005381 1.7e-22 110.5 237 30.4
Manes.11G140201 Manihot esculenta HOM05D004427 ORTHO05D005381 7.0e-21 105.1 187 38.5
FAN07G0825 Fragaria x ananassa HOM05D000639 ORTHO05D006731 1.2e-17 94.4 179 27.4
FAN17G0618 Fragaria x ananassa HOM05D000639 ORTHO05D006731 6.1e-17 92.0 110 39.1
AUR62037167 Chenopodium quinoa HOM05D004427 ORTHO05D005381 8.9e-16 88.2 77 49.4
FAN09G1397 Fragaria x ananassa HOM05D004427 ORTHO05D005381 6.4e-14 82.0 215 28.8
AUR62008635 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.9e-10 70.5 95 35.8
AUR62015500 Chenopodium quinoa HOM05D004427 ORTHO05D005381 1.2e-09 67.8 81 39.5
Cc02_g20940 Coffea canephora HOM05D001292 ORTHO05D001202 4.0e-08 62.8 263 22.8
Pp3c25_3200 Physcomitrium patens HOM05D001292 ORTHO05D001202 6.8e-08 62.0 210 24.8
MSTRG.24428 Avicennia marina HOM05D001292 ORTHO05D001202 1.5e-07 60.8 208 24.5
Cfa026731 Carpinus fangiana HOM05D004427 ORTHO05D005381 1.5e-07 60.8 110 34.5
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 1.5e-07 60.8 212 26.4
Rhsim01G0258900 Rhododendron simsii HOM05D004427 ORTHO05D005381 2.0e-07 60.5 52 46.2
Glyma.18G281500 Glycine max HOM05D001292 ORTHO05D001202 3.4e-07 59.7 260 23.1
EL10Ac1g01055 Beta vulgaris HOM05D001292 ORTHO05D001202 5.8e-07 58.9 217 26.3
Peaxi162Scf00495g00216 Petunia axillaris HOM05D001292 ORTHO05D001202 5.8e-07 58.9 197 27.9
Zm00001eb367170 Zea mays HOM05D001292 ORTHO05D001202 9.8e-07 58.2 200 28.5
Haze_22451 Corylus avellana HOM05D001292 ORTHO05D001202 1.7e-06 57.4 178 27.5
CsaV3_7G006900 Cucumis sativus L. HOM05D001292 ORTHO05D001202 1.7e-06 57.4 208 24.5
Rhsim07G0211800 Rhododendron simsii HOM05D001292 ORTHO05D001202 1.7e-06 57.4 180 28.9
SGA_v2.0_scaffold48G17832 Striga asiatica HOM05D001292 ORTHO05D001202 1.7e-06 57.4 214 23.4
CARHR241710 Cardamine hirsuta HOM05D001292 ORTHO05D001202 2.9e-06 56.6 203 23.6
Migut.N02858 Erythranthe guttata HOM05D001292 ORTHO05D001202 2.9e-06 56.6 208 25.0
unitig_8.g4849 Utricularia gibba HOM05D001292 ORTHO05D001202 2.9e-06 56.6 184 22.3
ClCG08G011690 Citrullus lanatus HOM05D001292 ORTHO05D001202 3.7e-06 56.2 170 24.1
Migut.B00556 Erythranthe guttata HOM05D001292 ORTHO05D001202 3.7e-06 56.2 254 23.6
LjContig00408g0003702 Lotus japonicus HOM05D001292 ORTHO05D001202 4.9e-06 55.8 203 26.1
Eucgr.F02147 Eucalyptus grandis HOM05D001292 ORTHO05D001202 6.4e-06 55.5 198 26.3
HanXRQChr15g0484871 Helianthus annuus HOM05D001292 ORTHO05D001202 6.4e-06 55.5 208 24.5
Oeu041818.1 Olea europaea HOM05D001292 ORTHO05D001202 6.4e-06 55.5 206 23.8
Os05g0207900 Oryza sativa ssp. japonica HOM05D001292 ORTHO05D001202 6.4e-06 55.5 202 24.8
GSVIVG01009173001 Vitis vinifera HOM05D001292 ORTHO05D001202 6.4e-06 55.5 206 23.8


User provided reference genes

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