Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G32790 Arabidopsis lyrata HOM05D010535 ORTHO05D005895 0.0e+00 1240.3 667 100.0
AL52U10020 Arabidopsis lyrata HOM05D010535 ORTHO05D005895 0.0e+00 1083.2 667 88.9
AT5G56930 Arabidopsis thaliana HOM05D010535 ORTHO05D005895 1.2e-283 979.5 694 80.7
Carub.0008s1741 Capsella rubella HOM05D010535 ORTHO05D005895 8.7e-245 850.5 700 72.1
Sp6g18630 Schrenkiella parvula HOM05D010535 ORTHO05D005895 1.4e-226 790.0 714 67.6
Thhalv10012834m.g Eutrema salsugineum HOM05D010535 ORTHO05D005895 1.0e-216 757.3 718 66.7
CARHR270670 Cardamine hirsuta HOM05D010535 ORTHO05D005895 2.7e-206 722.6 699 68.0
BraA02t05956Z Brassica rapa HOM05D010535 ORTHO05D005895 2.4e-194 682.9 688 63.2
A02p08870 Brassica napus HOM05D010535 ORTHO05D005895 5.9e-193 678.3 682 63.6
BcaC03g14196 Brassica carinata HOM05D010535 ORTHO05D005895 2.2e-192 676.4 693 62.8
C02p14780 Brassica napus HOM05D010535 ORTHO05D005895 2.2e-192 676.4 693 62.8
BolC2t07607H Brassica oleracea HOM05D010535 ORTHO05D005895 2.2e-192 676.4 693 62.8
BcaB05g22299 Brassica carinata HOM05D010535 ORTHO05D005895 9.2e-146 521.5 547 61.6
Aa31LG11G5970 Aethionema arabicum HOM05D010535 ORTHO05D005895 2.8e-118 430.3 608 49.7
Aa31LG11G5940 Aethionema arabicum HOM05D010535 ORTHO05D005895 2.6e-116 423.7 570 51.4
Aa31LG11G5930 Aethionema arabicum HOM05D010535 ORTHO05D005895 1.0e-88 332.0 370 61.1
TPR.G14423 Trifolium pratense HOM05D006920 ORTHO05D005895 4.1e-29 134.0 327 37.0
PGSC0003DMG400014565 Solanum tuberosum HOM05D006920 ORTHO05D005895 6.6e-27 126.7 256 43.4
DCAR_015050 Daucus carota HOM05D006920 ORTHO05D005895 7.3e-26 123.2 373 33.5
MD15G1209300 Malus domestica HOM05D006920 ORTHO05D005895 7.3e-26 123.2 520 31.2
Sed0019505 Sechium edule HOM05D006920 ORTHO05D005895 1.2e-25 122.5 582 30.1
Cc06_g11560 Coffea canephora HOM05D006920 ORTHO05D005895 4.7e-25 120.6 489 30.5
Nitab4.5_0005104g0050 Nicotiana tabacum HOM05D006920 ORTHO05D005895 6.8e-24 116.7 384 33.9
Nitab4.5_0008077g0010 Nicotiana tabacum HOM05D006920 ORTHO05D005895 2.0e-23 115.2 357 34.5
RcHm_v2.0_Chr3g0459471 Rosa chinensis HOM05D006920 ORTHO05D005895 2.0e-23 115.2 478 31.0
Sc08g0008560 Simmondsia chinensis HOM05D006920 ORTHO05D005895 2.0e-23 115.2 359 32.6
SGA_v2.0_scaffold4G02308 Striga asiatica HOM05D006920 ORTHO05D005895 5.8e-23 113.6 390 32.1
RcHm_v2.0_Chr2g0093651 Rosa chinensis HOM05D006920 ORTHO05D005895 7.6e-23 113.2 251 40.2
arahy.Tifrunner.gnm1.ann1.50MPSE Arachis hypogaea HOM05D006920 ORTHO05D005895 3.8e-22 110.9 690 28.1
ECA233G4205 Erigeron canadensis HOM05D006920 ORTHO05D005895 1.9e-21 108.6 254 38.6
Peaxi162Scf00028g00415 Petunia axillaris HOM05D006920 ORTHO05D005895 1.9e-21 108.6 452 31.6
PSO063G3291 Papaver somniferum HOM05D006920 ORTHO05D005895 3.2e-21 107.8 229 38.4
Duzib150G1610 Durio zibethinus HOM05D006920 ORTHO05D005895 4.1e-21 107.5 404 36.6
ClCG11G016050 Citrullus lanatus HOM05D006920 ORTHO05D005895 1.0e-19 102.8 375 34.9
DCAR_031337 Daucus carota HOM05D006920 ORTHO05D005895 1.3e-19 102.4 548 29.0
Nn6g35509 Nelumbo nucifera HOM05D006920 ORTHO05D005895 1.3e-19 102.4 525 27.4
PGR142G4106 Punica granatum HOM05D006920 ORTHO05D005895 1.3e-19 102.4 287 36.2
Dinv42334 Davidia involucrata HOM05D006920 ORTHO05D005895 1.7e-19 102.1 499 29.9
CsaV3_4G027920 Cucumis sativus L. HOM05D006920 ORTHO05D005895 3.0e-19 101.3 642 28.8
SalBow6G1737 Salvia bowleyana HOM05D006920 ORTHO05D005895 8.6e-19 99.8 334 35.0
CANSAT56G3092 Cannabis sativa HOM05D006920 ORTHO05D005895 1.5e-18 99.0 469 30.7
Hund06669 Selenicereus undatus HOM05D006920 ORTHO05D005895 1.9e-18 98.6 234 38.5
MSTRG.19500 Avicennia marina HOM05D006920 ORTHO05D005895 2.5e-18 98.2 741 25.6
Prupe.7G207100 Prunus persica HOM05D006920 ORTHO05D005895 2.5e-18 98.2 525 30.3
arahy.Tifrunner.gnm1.ann1.IGMF9F Arachis hypogaea HOM05D006920 ORTHO05D005895 3.3e-18 97.8 581 29.1
FAN19G0513 Fragaria x ananassa HOM05D006920 ORTHO05D005895 3.3e-18 97.8 351 29.9
Hma1.2p1_0476F.1_g160830 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 3.3e-18 97.8 479 29.4
MBI04_g34755_MAGBIO Magnolia biondii HOM05D006920 ORTHO05D005895 3.3e-18 97.8 345 34.2
Sopen05g005130 Solanum pennellii HOM05D006920 ORTHO05D005895 3.3e-18 97.8 419 31.5
PSO384G1468 Papaver somniferum HOM05D006920 ORTHO05D005895 4.3e-18 97.4 375 29.6
Dinv36779 Davidia involucrata HOM05D006920 ORTHO05D005895 7.3e-18 96.7 678 28.0
Hma1.2p1_0169F.1_g074930 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 7.3e-18 96.7 415 32.8
PSO832G2112 Papaver somniferum HOM05D006920 ORTHO05D005895 7.3e-18 96.7 229 37.6
Rhsim05G0018400 Rhododendron simsii HOM05D006920 ORTHO05D005895 1.2e-17 95.9 138 49.3
Atru.chr7.1617 Acer truncatum HOM05D006920 ORTHO05D005895 3.6e-17 94.4 392 32.4
Lj3g0019860 Lotus japonicus HOM05D006920 ORTHO05D005895 4.7e-17 94.0 247 37.7
HanXRQChr10g0310341 Helianthus annuus HOM05D001214 ORTHO05D001029 6.2e-17 93.6 123 52.0
Medtr5g096500 Medicago truncatula HOM05D006920 ORTHO05D005895 1.1e-16 92.8 363 31.1
Solyc05g009350.4 Solanum lycopersicum HOM05D006920 ORTHO05D005895 1.1e-16 92.8 256 38.3
HPP92_005499 Vanilla planifolia HOM05D006920 ORTHO05D005895 1.1e-16 92.8 424 29.2
Oeu064585.1 Olea europaea HOM05D006920 ORTHO05D005895 2.4e-16 91.7 528 28.2
Phvul.010G094400 Phaseolus vulgaris HOM05D006920 ORTHO05D005895 2.4e-16 91.7 613 28.4
Lj6g0023447 Lotus japonicus HOM05D006920 ORTHO05D005895 3.1e-16 91.3 247 38.1
HanXRQChr14g0436791 Helianthus annuus HOM05D006920 ORTHO05D005895 4.0e-16 90.9 71 54.9
Manes.01G178200 Manihot esculenta HOM05D006920 ORTHO05D005895 8.9e-16 89.7 329 31.0
TWI63G0676 Tripterygium wilfordii HOM05D006920 ORTHO05D005895 1.2e-15 89.4 491 29.3
Psat5g132560 Pisum sativum HOM05D006920 ORTHO05D005895 2.0e-15 88.6 444 29.1
A10p14250 Brassica napus HOM05D010535 ORTHO05D005895 2.6e-15 88.2 55 78.2
BraA10t43516Z Brassica rapa HOM05D010535 ORTHO05D005895 2.6e-15 88.2 55 78.2
Gohir.A05G030600 Gossypium hirsutum HOM05D006920 ORTHO05D005895 2.6e-15 88.2 393 30.8
GSVIVG01015184001 Vitis vinifera HOM05D006920 ORTHO05D005895 3.4e-15 87.8 353 30.3
Migut.J00581 Erythranthe guttata HOM05D006920 ORTHO05D005895 7.6e-15 86.7 663 28.7
Gohir.A10G064850 Gossypium hirsutum HOM05D006920 ORTHO05D005895 7.6e-15 86.7 318 30.5
FvH4_1g07770 Fragaria vesca HOM05D006920 ORTHO05D005895 9.9e-15 86.3 441 29.7
Oeu000320.3 Olea europaea HOM05D006920 ORTHO05D005895 9.9e-15 86.3 445 25.6
CDE04G1224 Ceratophyllum demersum HOM05D006920 ORTHO05D005895 1.7e-14 85.5 124 44.4
Eucgr.C01704 Eucalyptus grandis HOM05D006920 ORTHO05D005895 1.7e-14 85.5 294 34.4
Gorai.009G032200 Gossypium raimondii HOM05D006920 ORTHO05D005895 1.7e-14 85.5 394 31.2
Thecc.09G086800 Theobroma cacao HOM05D006920 ORTHO05D005895 1.7e-14 85.5 593 29.7
Actinidia25244 Actinidia chinensis HOM05D006920 ORTHO05D005895 2.9e-14 84.7 515 28.0
VMungo0331G1985 Vigna mungo HOM05D006920 ORTHO05D005895 2.9e-14 84.7 592 25.5
Haze_25928 Corylus avellana HOM05D006920 ORTHO05D005895 6.4e-14 83.6 109 49.5
Glyma.14G213000 Glycine max HOM05D006920 ORTHO05D005895 6.4e-14 83.6 566 27.2
unitig_699.g19418 Utricularia gibba HOM05D006920 ORTHO05D005895 6.4e-14 83.6 557 29.3
EL10Ac8g19187 Beta vulgaris HOM05D036879 ORTHO05D005895 1.4e-13 82.4 111 57.7
ATR0178G033 Amborella trichopoda HOM05D006920 ORTHO05D005895 1.9e-13 82.0 125 40.0
Aqoxy7G02156 Aquilegia oxysepala HOM05D006920 ORTHO05D005895 3.2e-13 81.3 467 28.3
Cfa003067 Carpinus fangiana HOM05D006920 ORTHO05D005895 4.2e-13 80.9 308 33.8
Potri.006G148400 Populus trichocarpa HOM05D006920 ORTHO05D005895 4.2e-13 80.9 287 35.5
FAN28G2753 Fragaria x ananassa HOM05D006920 ORTHO05D005895 7.1e-13 80.1 474 28.9
FAN23G0431 Fragaria x ananassa HOM05D006920 ORTHO05D005895 9.3e-13 79.7 507 29.2
FAN26G3372 Fragaria x ananassa HOM05D006920 ORTHO05D005895 9.3e-13 79.7 647 26.9
HanXRQChr03g0060321 Helianthus annuus HOM05D006920 ORTHO05D005895 1.6e-12 79.0 119 53.8
HanXRQChr05g0128971 Helianthus annuus HOM05D006920 ORTHO05D005895 1.6e-12 79.0 119 53.8
FAN26G1238 Fragaria x ananassa HOM05D006920 ORTHO05D005895 2.7e-12 78.2 647 26.9
Sed0003269 Sechium edule HOM05D006920 ORTHO05D005895 3.5e-12 77.8 438 29.5
Ciclev10007413m.g Citrus clementina HOM05D006920 ORTHO05D005895 6.0e-12 77.0 543 30.2
Gohir.D05G032000 Gossypium hirsutum HOM05D006920 ORTHO05D005895 6.0e-12 77.0 393 29.8
Lsat_1_v5_gn_7_36681 Lactuca sativa HOM05D006920 ORTHO05D005895 1.0e-11 76.3 169 32.5
Mapoly0131s0021 Marchantia polymorpha HOM05D006920 ORTHO05D005895 1.3e-11 75.9 198 37.9
Lj4A292T33 Lonicera japonica HOM05D006920 ORTHO05D005895 1.7e-11 75.5 395 26.6
Migut.J00579 Erythranthe guttata HOM05D006920 ORTHO05D005895 2.3e-11 75.1 113 50.4
Sabra06G0117400 Salix brachista HOM05D006920 ORTHO05D005895 3.0e-11 74.7 281 33.8
ECA240G4801 Erigeron canadensis HOM05D006920 ORTHO05D005895 5.1e-11 73.9 63 58.7
CAN.G610.81 Capsicum annuum HOM05D006920 ORTHO05D005895 1.1e-10 72.8 419 28.6
Lalb_Chr25g0278561 Lupinus albus HOM05D006920 ORTHO05D005895 1.1e-10 72.8 327 33.0
CDE06G2477 Ceratophyllum demersum HOM05D002968 ORTHO05D005895 1.5e-10 72.4 207 36.7
MELO3C010521.2 Cucumis melo HOM05D006920 ORTHO05D005895 4.8e-09 67.4 532 26.9
Glyma.18G092000 Glycine max HOM05D006920 ORTHO05D005895 4.8e-09 67.4 202 32.2
TAR383G0297 Trochodendron aralioides HOM05D006920 ORTHO05D005895 4.8e-09 67.4 584 27.7
COL.COLO4_18185 Corchorus olitorius HOM05D006920 ORTHO05D005895 6.2e-09 67.0 663 26.2
SMO147G0117 Selaginella moellendorffii HOM05D010535 ORTHO05D005895 8.1e-09 66.6 70 52.9
AagrBONN_evm.TU.Sc2ySwM_228.2245 Anthoceros agrestis HOM05D006920 ORTHO05D005895 1.1e-08 66.2 163 38.0
Zm00001eb160100 Zea mays HOM05D006920 ORTHO05D005895 1.4e-08 65.9 202 34.7
Ah.12g064230 Amaranthus hybridus HOM05D006920 ORTHO05D005895 1.8e-08 65.5 54 66.7
Hma1.2p1_1540F.1_g289660 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 1.8e-08 65.5 146 34.2
Hma1.2p1_3164F.1_g333530 Hydrangea macrophylla HOM05D006920 ORTHO05D005895 1.8e-08 65.5 68 44.1
SEGI_28908 Sequoiadendron giganteum HOM05D006920 ORTHO05D005895 6.9e-08 63.5 162 38.3
CiPaw.03G213600 Carya illinoinensis HOM05D006920 ORTHO05D005895 2.6e-07 61.6 421 29.5
vmacro17256 Vaccinium macrocarpon HOM05D006920 ORTHO05D005895 5.8e-07 60.5 236 27.5
Ca_12179_v3 Cicer arietinum L. HOM05D006920 ORTHO05D005895 1.7e-06 58.9 432 24.5
Eucgr.C01628 Eucalyptus grandis HOM05D006920 ORTHO05D005895 2.2e-06 58.5 193 25.4
QL02p062309 Quercus lobata HOM05D006920 ORTHO05D005895 2.2e-06 58.5 518 28.2
Pp3c19_22680 Physcomitrium patens HOM05D006920 ORTHO05D005895 4.9e-06 57.4 266 28.9


User provided reference genes

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