Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 1.8e-50 203.0 167 100.0
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 4.0e-50 201.8 167 99.4
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 5.3e-50 201.4 167 99.4
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 6.5e-48 194.5 167 96.4
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 8.4e-48 194.1 167 96.4
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 5.5e-47 191.4 167 95.2
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 5.5e-47 191.4 167 95.2
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 5.5e-47 191.4 167 95.2
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 7.1e-47 191.0 167 95.2
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 7.1e-47 191.0 167 95.2
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 2.1e-46 189.5 167 95.2
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 2.1e-46 189.5 167 94.6
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 3.5e-46 188.7 167 94.0
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 7.4e-44 181.0 166 90.4
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 4.8e-43 178.3 166 88.6
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 4.8e-43 178.3 166 88.6
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 2.4e-42 176.0 166 89.2
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 4.1e-42 175.3 166 91.6
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 5.3e-42 174.9 166 86.7
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 1.2e-41 173.7 166 86.7
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 1.5e-41 173.3 165 87.3
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 2.0e-41 172.9 165 87.3
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 2.0e-41 172.9 166 87.3
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 2.0e-41 172.9 165 86.7
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 2.0e-41 172.9 165 86.7
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 2.0e-41 172.9 165 86.7
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 2.6e-41 172.6 165 86.7
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 2.6e-41 172.6 166 86.1
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 2.6e-41 172.6 166 86.1
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 4.5e-41 171.8 166 84.3
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 4.5e-41 171.8 166 87.3
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 4.5e-41 171.8 166 86.7
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 7.6e-41 171.0 165 86.1
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 7.6e-41 171.0 164 87.2
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 1.0e-40 170.6 166 86.7
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.0e-40 170.6 166 86.7
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 1.0e-40 170.6 166 84.9
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 1.0e-40 170.6 164 87.8
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 1.0e-40 170.6 165 87.9
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 1.0e-40 170.6 165 84.8
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 1.7e-40 169.9 166 86.1
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.2e-40 169.5 166 85.5
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.2e-40 169.5 166 85.5
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 2.2e-40 169.5 166 85.5
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 2.9e-40 169.1 166 86.1
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.9e-40 169.1 166 85.5
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 3.8e-40 168.7 166 84.9
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 3.8e-40 168.7 166 84.3
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 3.8e-40 168.7 166 84.9
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 3.8e-40 168.7 166 84.9
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 3.8e-40 168.7 166 84.9
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 5.0e-40 168.3 166 84.9
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 5.0e-40 168.3 166 84.3
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 5.0e-40 168.3 164 85.4
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 6.5e-40 167.9 166 86.1
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 6.5e-40 167.9 166 83.7
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 1.1e-39 167.2 166 84.9
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 1.1e-39 167.2 166 84.3
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 1.4e-39 166.8 164 81.7
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 1.4e-39 166.8 166 84.9
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 2.5e-39 166.0 166 83.7
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 2.5e-39 166.0 166 83.1
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 2.5e-39 166.0 166 84.9
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 2.5e-39 166.0 164 85.4
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 3.2e-39 165.6 166 84.3
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 3.2e-39 165.6 166 83.7
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 4.2e-39 165.2 166 83.1
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 4.2e-39 165.2 166 84.9
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 4.2e-39 165.2 166 83.7
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 7.2e-39 164.5 166 53.6
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 7.2e-39 164.5 163 85.9
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 7.2e-39 164.5 166 85.5
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 9.3e-39 164.1 165 84.2
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 9.3e-39 164.1 162 85.2
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 1.2e-38 163.7 165 84.2
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 1.2e-38 163.7 165 84.2
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 1.2e-38 163.7 165 83.6
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 1.2e-38 163.7 166 83.1
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 2.1e-38 162.9 164 84.8
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 2.1e-38 162.9 166 82.5
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 2.7e-38 162.5 164 82.9
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 2.7e-38 162.5 169 84.6
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 3.6e-38 162.2 165 83.6
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.6e-38 162.2 166 81.9
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 7.9e-38 161.0 166 84.9
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.0e-37 160.6 166 83.1
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 1.0e-37 160.6 164 84.1
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 1.0e-37 160.6 166 81.9
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 1.0e-37 160.6 166 88.0
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 1.8e-37 159.8 165 83.6
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 1.8e-37 159.8 190 58.9
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 2.3e-37 159.5 177 64.4
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.3e-37 159.5 166 64.5
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 5.1e-37 158.3 165 84.8
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 6.7e-37 157.9 166 82.5
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 8.8e-37 157.5 166 80.7
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 1.9e-36 156.4 166 68.1
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 4.3e-36 155.2 158 84.2
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 4.3e-36 155.2 167 85.6
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 5.7e-36 154.8 157 86.0
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 5.7e-36 154.8 166 82.5
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 9.7e-36 154.1 166 84.9
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 9.7e-36 154.1 167 79.6
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 2.2e-35 152.9 162 83.3
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 3.1e-34 149.1 80 86.2
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.1e-34 148.7 167 50.3
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 1.2e-33 147.1 81 82.7
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 2.6e-33 146.0 80 83.8
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.7e-32 143.3 81 82.7
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.7e-32 143.3 81 82.7
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.7e-32 143.3 81 82.7
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.8e-32 142.1 81 81.5
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 8.5e-32 141.0 168 75.6
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.9e-31 139.8 81 80.2
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.5e-31 139.4 81 81.5
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 3.2e-31 139.0 73 87.7
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 3.2e-31 139.0 73 87.7
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.2e-31 139.0 81 80.2
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.1e-30 136.3 166 51.8
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.4e-29 133.7 166 77.1
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 1.8e-29 133.3 170 72.9
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.3e-28 129.0 71 83.1
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 7.4e-28 127.9 72 83.3
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 9.7e-28 127.5 156 76.3
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 4.1e-26 122.1 72 79.2
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.2e-25 120.6 166 48.8
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 2.6e-17 92.8 166 68.1
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 1.3e-16 90.5 58 67.2
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 9.1e-10 67.8 107 38.3
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 2.5e-07 59.7 115 73.0


User provided reference genes

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