Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G26780 Arabidopsis lyrata HOM05D000368 ORTHO05D009348 3.9e-95 352.1 269 100.0
AT5G52380 Arabidopsis thaliana HOM05D000368 ORTHO05D009348 2.9e-90 335.9 269 95.2
Carub.0008s1248 Capsella rubella HOM05D000368 ORTHO05D009348 1.5e-83 313.5 269 92.6
CARHR265330 Cardamine hirsuta HOM05D000368 ORTHO05D009348 2.1e-72 276.6 273 86.4
Thhalv10014379m.g Eutrema salsugineum HOM05D000368 ORTHO05D009348 1.1e-57 227.6 275 78.5
Sp6g14600 Schrenkiella parvula HOM05D000368 ORTHO05D000289 1.6e-56 223.8 269 78.8
Aa31LG3G8750 Aethionema arabicum HOM05D000368 ORTHO05D009348 7.9e-56 221.5 276 76.1
C03p18350 Brassica napus HOM05D000368 ORTHO05D000289 9.4e-49 198.0 271 76.4
BolC3t14232H Brassica oleracea HOM05D000368 ORTHO05D000289 1.2e-48 197.6 271 75.3
A03p15700 Brassica napus HOM05D000368 ORTHO05D000289 2.2e-45 186.8 271 73.4
BolC9t57061H Brassica oleracea HOM05D000368 ORTHO05D009348 5.9e-43 178.7 298 61.1
THA.LOC104811975 Tarenaya hassleriana HOM05D000368 ORTHO05D009348 4.2e-41 172.6 279 67.4
Solyc03g025740.4 Solanum lycopersicum HOM05D000368 ORTHO05D009348 5.5e-41 172.2 273 69.2
Sopen03g004560 Solanum pennellii HOM05D000368 ORTHO05D009348 5.5e-41 172.2 273 69.2
BraA03t10861Z Brassica rapa HOM05D000368 ORTHO05D000289 7.2e-41 171.8 287 59.6
PGSC0003DMG402014344 Solanum tuberosum HOM05D000368 ORTHO05D009348 2.0e-38 163.7 273 67.8
Eucgr.K00263 Eucalyptus grandis HOM05D000368 ORTHO05D009348 3.4e-38 162.9 275 64.4
VMungo0720G3173 Vigna mungo HOM05D000368 ORTHO05D009348 4.4e-38 162.5 271 64.9
C09p41730 Brassica napus HOM05D000368 ORTHO05D000289 2.2e-37 160.2 318 42.8
Potri.012G141700 Populus trichocarpa HOM05D000368 ORTHO05D009348 6.3e-37 158.7 280 66.4
Rhsim09G0197900 Rhododendron simsii HOM05D000368 ORTHO05D009348 3.1e-36 156.4 273 64.8
Potri.015G144600 Populus trichocarpa HOM05D000368 ORTHO05D009348 2.7e-35 153.3 279 65.6
Sabra15G0154200 Salix brachista HOM05D000368 ORTHO05D009348 1.0e-34 151.4 277 65.0
TAR629G3168 Trochodendron aralioides HOM05D000368 ORTHO05D009348 1.3e-34 151.0 290 59.7
HanXRQChr07g0207001 Helianthus annuus HOM05D000368 ORTHO05D009348 2.9e-34 149.8 277 61.4
MD07G1269700 Malus domestica HOM05D000368 ORTHO05D009348 2.9e-34 149.8 280 57.9
Prupe.2G295100 Prunus persica HOM05D000368 ORTHO05D009348 1.1e-33 147.9 280 56.1
FAN06G0492 Fragaria x ananassa HOM05D000368 ORTHO05D009348 1.5e-33 147.5 278 56.8
FAN06G1486 Fragaria x ananassa HOM05D000368 ORTHO05D009348 1.5e-33 147.5 278 56.8
Cfa008323 Carpinus fangiana HOM05D000368 ORTHO05D009348 1.9e-33 147.1 302 60.3
PSO063G1784 Papaver somniferum HOM05D000368 ORTHO05D009348 1.9e-33 147.1 291 61.5
Cc02_g02880 Coffea canephora HOM05D000368 ORTHO05D009348 2.5e-33 146.7 282 55.7
Manes.14G025600 Manihot esculenta HOM05D000368 ORTHO05D009348 5.5e-33 145.6 280 63.2
Ciclev10005579m.g Citrus clementina HOM05D000368 ORTHO05D009348 7.2e-33 145.2 282 64.5
Hund11743 Selenicereus undatus HOM05D000368 ORTHO05D009348 7.2e-33 145.2 284 63.0
MELO3C006911.2 Cucumis melo HOM05D000368 ORTHO05D009348 1.6e-32 144.1 243 70.8
ECA238G2658 Erigeron canadensis HOM05D000368 ORTHO05D000289 1.6e-32 144.1 274 63.1
Phvul.007G070700 Phaseolus vulgaris HOM05D000368 ORTHO05D009348 1.6e-32 144.1 274 57.7
EL10Ac3g05631 Beta vulgaris HOM05D000368 ORTHO05D009348 2.8e-32 143.3 275 61.5
RcHm_v2.0_Chr1g0377401 Rosa chinensis HOM05D000368 ORTHO05D009348 2.8e-32 143.3 282 57.1
PGR142G2510 Punica granatum HOM05D000368 ORTHO05D009348 8.0e-32 141.7 281 61.9
GSVIVG01028962001 Vitis vinifera HOM05D000368 ORTHO05D009348 8.0e-32 141.7 280 62.5
DCAR_020244 Daucus carota HOM05D000368 ORTHO05D009348 1.0e-31 141.4 237 66.7
PSO782G2079 Papaver somniferum HOM05D000368 ORTHO05D009348 1.0e-31 141.4 291 61.9
Dinv35216 Davidia involucrata HOM05D000368 ORTHO05D000289 1.8e-31 140.6 281 59.8
Ah.13g068650 Amaranthus hybridus HOM05D000368 ORTHO05D009348 3.0e-31 139.8 274 57.7
Cpa.g.sc107.59 Carica papaya HOM05D000368 ORTHO05D009348 8.8e-31 138.3 278 62.6
CiPaw.04G071400 Carya illinoinensis HOM05D000368 ORTHO05D009348 1.2e-30 137.9 279 63.4
ClCG05G008070 Citrullus lanatus HOM05D000368 ORTHO05D009348 1.5e-30 137.5 277 63.5
CsaV3_3G017130 Cucumis sativus L. HOM05D000368 ORTHO05D009348 2.0e-30 137.1 276 63.0
TPR.G27005 Trifolium pratense HOM05D000368 ORTHO05D009348 4.4e-30 136.0 273 46.9
Thecc.03G177600 Theobroma cacao HOM05D000368 ORTHO05D009348 1.3e-29 134.4 281 60.9
MD01G1201700 Malus domestica HOM05D000368 ORTHO05D009348 2.2e-29 133.7 282 56.4
Sed0010584 Sechium edule HOM05D000368 ORTHO05D009348 2.2e-29 133.7 276 62.7
vmacro09836 Vaccinium macrocarpon HOM05D000368 ORTHO05D000289 4.9e-29 132.5 257 47.9
Gohir.D12G258500 Gossypium hirsutum HOM05D000368 ORTHO05D009348 1.6e-27 127.5 278 55.4
Aqoxy5G04003 Aquilegia oxysepala HOM05D000368 ORTHO05D009348 2.0e-27 127.1 283 60.4
FAN01G1188 Fragaria x ananassa HOM05D000368 ORTHO05D009348 2.0e-27 127.1 232 59.5
Gorai.008G276900 Gossypium raimondii HOM05D000368 ORTHO05D009348 2.0e-27 127.1 277 55.2
FvH4_7g29542 Fragaria vesca HOM05D000368 ORTHO05D009348 3.5e-27 126.3 152 53.9
Gohir.A12G257200 Gossypium hirsutum HOM05D000368 ORTHO05D009348 5.9e-27 125.6 279 55.9
Nn1g01474 Nelumbo nucifera HOM05D000368 ORTHO05D009348 5.9e-27 125.6 287 59.9
MSTRG.8734 Avicennia marina HOM05D000368 ORTHO05D009348 7.8e-27 125.2 268 61.2
Haze_13700 Corylus avellana HOM05D000368 ORTHO05D009348 7.8e-27 125.2 264 62.5
Lsat_1_v5_gn_2_132381 Lactuca sativa HOM05D000368 ORTHO05D009348 7.8e-27 125.2 272 59.2
Ca_10757_v3 Cicer arietinum L. HOM05D000368 ORTHO05D009348 1.3e-26 124.4 274 36.1
Psat0s3135g0040 Pisum sativum HOM05D000368 ORTHO05D009348 1.7e-26 124.0 272 58.1
FAN10G1532 Fragaria x ananassa HOM05D000368 ORTHO05D009348 2.3e-26 123.6 278 54.3
Hma1.2p1_0270F.1_g107970 Hydrangea macrophylla HOM05D000368 ORTHO05D009348 2.9e-26 123.2 286 59.8
Lalb_Chr21g0305051 Lupinus albus HOM05D000368 ORTHO05D009348 2.9e-26 123.2 271 60.5
Sc19g0001470 Simmondsia chinensis HOM05D000368 ORTHO05D009348 2.9e-26 123.2 276 60.9
TWI39G0209 Tripterygium wilfordii HOM05D000368 ORTHO05D009348 8.6e-26 121.7 282 59.6
Atru.BG.181.p Acer truncatum HOM05D000368 ORTHO05D009348 1.5e-25 120.9 98 62.2
Atru.chr1.452 Acer truncatum HOM05D000368 ORTHO05D009348 1.5e-25 120.9 98 62.2
Glyma.10G235200 Glycine max HOM05D000368 ORTHO05D009348 1.5e-25 120.9 272 56.2
Nitab4.5_0002117g0050 Nicotiana tabacum HOM05D000368 ORTHO05D009348 1.5e-25 120.9 303 47.2
Lj5g0009535 Lotus japonicus HOM05D000368 ORTHO05D009348 1.9e-25 120.6 273 59.3
CSS0042203 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D009348 2.5e-25 120.2 149 60.4
Glyma.20G159100 Glycine max HOM05D000368 ORTHO05D009348 5.6e-25 119.0 273 56.0
FAN10G1519 Fragaria x ananassa HOM05D000368 ORTHO05D009348 2.8e-24 116.7 274 53.3
Dinv24555 Davidia involucrata HOM05D000368 ORTHO05D009348 6.1e-24 115.5 105 56.2
Dinv28433 Davidia involucrata HOM05D000368 ORTHO05D009348 1.0e-23 114.8 127 59.1
CSS0028945 Camellia sinensis var. sinensis HOM05D000368 ORTHO05D009348 1.4e-23 114.4 149 61.7
Migut.F00336 Erythranthe guttata HOM05D000368 ORTHO05D009348 3.0e-23 113.2 277 58.1
arahy.Tifrunner.gnm1.ann1.C4Z81U Arachis hypogaea HOM05D000368 ORTHO05D009348 4.0e-23 112.8 285 56.5
QL09p014019 Quercus lobata HOM05D000368 ORTHO05D009348 8.9e-23 111.7 319 52.7
arahy.Tifrunner.gnm1.ann1.HM7G91 Arachis hypogaea HOM05D000368 ORTHO05D009348 2.0e-22 110.5 287 54.7
HPP92_018588 Vanilla planifolia HOM05D000368 ORTHO05D009348 2.6e-22 110.2 278 59.4
SGA_v2.0_scaffold44G16725 Striga asiatica HOM05D000368 ORTHO05D009348 4.4e-22 109.4 277 56.3
HPP92_006518 Vanilla planifolia HOM05D000368 ORTHO05D009348 5.7e-22 109.0 279 58.8
CANSAT21G1838 Cannabis sativa HOM05D000368 ORTHO05D009348 2.9e-21 106.7 248 63.3
Actinidia31822 Actinidia chinensis HOM05D000368 ORTHO05D009348 3.7e-21 106.3 151 61.6
AUR62015971 Chenopodium quinoa HOM05D000368 ORTHO05D009348 3.7e-21 106.3 230 67.0
MBI17_g19093_MAGBIO Magnolia biondii HOM05D000368 ORTHO05D009348 3.7e-21 106.3 106 53.8
Zm00001eb074410 Zea mays HOM05D000368 ORTHO05D009348 1.7e-18 97.4 286 55.6
Duzib205G0377 Durio zibethinus HOM05D000368 ORTHO05D000289 8.6e-18 95.1 278 47.8
Os04g0555800 Oryza sativa ssp. japonica HOM05D000368 ORTHO05D009348 3.3e-17 93.2 100 52.0
ATR0680G368 Amborella trichopoda HOM05D000368 ORTHO05D009348 5.6e-17 92.4 287 54.4
A10p09970 Brassica napus HOM05D000368 ORTHO05D009348 5.2e-15 85.9 249 33.3
BcaC01g06184 Brassica carinata HOM05D000368 ORTHO05D000289 1.2e-14 84.7 72 69.4
BraA10t43080Z Brassica rapa HOM05D000368 ORTHO05D009348 1.5e-14 84.3 180 40.0
Actinidia03122 Actinidia chinensis HOM05D000368 ORTHO05D009348 2.4e-12 77.0 99 47.5
Pp3c16_20170 Physcomitrium patens HOM05D000368 ORTHO05D009348 1.6e-11 74.3 54 59.3
AagrBONN_evm.TU.Sc2ySwM_117.528 Anthoceros agrestis HOM05D000368 ORTHO05D009348 1.7e-10 70.9 55 56.4
SEGI_15321 Sequoiadendron giganteum HOM05D000368 ORTHO05D009348 1.5e-09 67.8 101 40.6
Mapoly0006s0064 Marchantia polymorpha HOM05D000368 ORTHO05D009348 2.1e-08 63.9 54 50.0
Nitab4.5_0001842g0090 Nicotiana tabacum HOM05D000368 ORTHO05D009348 2.8e-08 63.5 272 36.0


User provided reference genes

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