Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G26610 Arabidopsis lyrata HOM05D012366 ORTHO05D003332 0.0e+00 1245.3 681 100.0
AT5G52230 Arabidopsis thaliana HOM05D012366 ORTHO05D003332 8.8e-269 930.2 759 74.0
Carub.0008s1232 Capsella rubella HOM05D012366 ORTHO05D003332 8.0e-254 880.6 691 74.8
Thhalv10012954m.g Eutrema salsugineum HOM05D012366 ORTHO05D003332 2.3e-216 756.1 694 65.1
Sp6g14480 Schrenkiella parvula HOM05D012366 ORTHO05D003332 1.1e-213 747.3 696 65.2
C09p41640 Brassica napus HOM05D012366 ORTHO05D003332 5.1e-184 648.7 669 61.3
BcaB08g35576 Brassica carinata HOM05D012366 ORTHO05D003332 1.5e-183 647.1 703 59.6
BcaC04g20600 Brassica carinata HOM05D012366 ORTHO05D003332 3.1e-181 639.4 669 60.8
BraA10t43073Z Brassica rapa HOM05D012366 ORTHO05D003332 4.3e-167 592.4 663 59.3
A10p09930 Brassica napus HOM05D012366 ORTHO05D003332 2.8e-166 589.7 665 59.5
CARHR265150 Cardamine hirsuta HOM05D012366 ORTHO05D003332 3.7e-134 483.0 536 64.0
Aa31LG3G8610 Aethionema arabicum HOM05D012366 ORTHO05D003332 3.1e-125 453.4 690 47.8
THA.LOC104800257 Tarenaya hassleriana HOM05D012366 ORTHO05D003332 1.6e-81 308.1 765 36.5
CARHR265160 Cardamine hirsuta HOM05D012366 ORTHO05D003332 4.4e-42 177.2 108 83.3
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 6.7e-27 126.7 793 26.9
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.8e-25 121.3 733 25.4
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 2.4e-24 118.2 542 27.7
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 4.1e-24 117.5 544 28.5
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 1.6e-23 115.5 737 25.4
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 8.5e-22 109.8 544 27.2
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 2.8e-17 94.7 320 30.6
Atru.chr1.477_Atru.chr1.478 Acer truncatum HOM05D003520 ORTHO05D003332 7.0e-16 90.1 667 24.9
Phvul.004G117900 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 1.6e-15 89.0 279 29.0
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 2.0e-15 88.6 671 25.5
QL09p014562 Quercus lobata HOM05D003520 ORTHO05D003332 3.5e-15 87.8 549 25.0
Cpa.g.sc107.38 Carica papaya HOM05D003520 ORTHO05D003332 1.7e-14 85.5 280 32.1
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 1.7e-14 85.5 762 24.1
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 2.9e-14 84.7 583 23.7
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 3.8e-14 84.3 691 23.2
Sabra12G0103700 Salix brachista HOM05D003520 ORTHO05D003332 3.8e-14 84.3 117 45.3
Gohir.D12G259800 Gossypium hirsutum HOM05D003520 ORTHO05D003332 5.0e-14 84.0 617 24.3
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 8.6e-14 83.2 263 30.8
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 1.1e-13 82.8 91 47.3
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 5.5e-13 80.5 597 25.0
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 5.5e-13 80.5 275 31.3
CiPaw.03G105100 Carya illinoinensis HOM05D003520 ORTHO05D003332 7.2e-13 80.1 582 24.7
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 7.2e-13 80.1 189 32.8
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 9.5e-13 79.7 264 30.3
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 1.2e-12 79.3 684 24.1
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.2e-12 79.3 703 23.0
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 1.0e-11 76.3 217 31.3
Nitab4.5_0001508g0010 Nicotiana tabacum HOM05D012625 ORTHO05D003332 1.2e-10 72.8 107 42.1
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 2.0e-10 72.0 95 40.0
Lsat_1_v5_gn_6_86841 Lactuca sativa HOM05D003520 ORTHO05D003332 4.4e-10 70.9 88 43.2
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 4.4e-10 70.9 82 43.9
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 4.4e-10 70.9 677 24.2
Nitab4.5_0000716g0220 Nicotiana tabacum HOM05D012625 ORTHO05D003332 4.4e-10 70.9 105 41.9
Manes.14G027150 Manihot esculenta HOM05D003520 ORTHO05D003332 9.8e-10 69.7 171 31.0
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.3e-09 69.3 96 42.7
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 2.2e-09 68.6 73 43.8
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 2.8e-09 68.2 155 32.3
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 2.8e-09 68.2 624 23.4
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 2.8e-09 68.2 624 23.4
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 4.9e-09 67.4 262 28.2
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 4.9e-09 67.4 99 35.4
Lj8C25T11 Lonicera japonica HOM05D003520 ORTHO05D003332 4.9e-09 67.4 100 41.0
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 6.3e-09 67.0 90 41.1
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 6.3e-09 67.0 98 39.8
AUR62017242 Chenopodium quinoa HOM05D003520 ORTHO05D003332 6.3e-09 67.0 268 27.6
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 6.3e-09 67.0 210 33.3
Peaxi162Scf00915g00037 Petunia axillaris HOM05D012625 ORTHO05D003332 6.3e-09 67.0 100 41.0
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 8.3e-09 66.6 125 37.6
FAN03G2536 Fragaria x ananassa HOM05D016299 ORTHO05D003332 8.3e-09 66.6 212 30.2
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 1.4e-08 65.9 82 42.7
FvH4_7g29290 Fragaria vesca HOM05D016299 ORTHO05D003332 1.4e-08 65.9 212 30.2
FAN01G0032 Fragaria x ananassa HOM05D016299 ORTHO05D003332 1.4e-08 65.9 213 31.9
FAN03G3032 Fragaria x ananassa HOM05D016299 ORTHO05D003332 1.4e-08 65.9 212 30.2
FAN06G4500 Fragaria x ananassa HOM05D016299 ORTHO05D003332 1.4e-08 65.9 212 30.2
FAN06G4083 Fragaria x ananassa HOM05D016299 ORTHO05D003332 1.8e-08 65.5 212 30.2
HanXRQChr09g0253501 Helianthus annuus HOM05D003520 ORTHO05D003332 1.8e-08 65.5 117 35.0
Ah.12g057370 Amaranthus hybridus HOM05D003520 ORTHO05D003332 2.4e-08 65.1 289 28.0
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 3.1e-08 64.7 568 23.8
MELO3C005647.2 Cucumis melo HOM05D003520 ORTHO05D003332 3.1e-08 64.7 112 40.2
FAN10G1120 Fragaria x ananassa HOM05D016299 ORTHO05D003332 3.1e-08 64.7 206 29.1
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 3.1e-08 64.7 277 31.0
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 4.1e-08 64.3 279 27.2
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 4.1e-08 64.3 156 31.4
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 5.4e-08 63.9 86 41.9
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 7.0e-08 63.5 671 22.8
RcHm_v2.0_Chr1g0377031 Rosa chinensis HOM05D016299 ORTHO05D003332 7.0e-08 63.5 213 29.1
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 7.0e-08 63.5 79 41.8
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 9.2e-08 63.2 75 44.0
Oeu024236.1 Olea europaea HOM05D012625 ORTHO05D003332 1.6e-07 62.4 94 42.6
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 2.7e-07 61.6 175 32.6
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 4.5e-07 60.8 93 36.6
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 5.9e-07 60.5 76 39.5
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 7.8e-07 60.1 244 28.3
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 1.0e-06 59.7 172 30.2
arahy.Tifrunner.gnm1.ann1.SM3UTK Arachis hypogaea HOM05D003520 ORTHO05D003332 1.3e-06 59.3 120 32.5
Lj4g0003069 Lotus japonicus HOM05D003520 ORTHO05D003332 2.9e-06 58.2 103 33.0
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 3.8e-06 57.8 277 27.4
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 3.8e-06 57.8 630 24.3
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 6.6e-06 57.0 75 41.3
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 6.6e-06 57.0 86 32.6
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 8.6e-06 56.6 177 28.2


User provided reference genes

Program Settings