Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G25470 Arabidopsis lyrata HOM05D003776 ORTHO05D004459 0.0e+00 3634.3 1870 100.0
AT5G51200 Arabidopsis thaliana HOM05D003776 ORTHO05D004459 0.0e+00 3546.5 1870 97.5
Carub.0008s1091 Capsella rubella HOM05D003776 ORTHO05D004459 0.0e+00 3475.3 1870 95.3
CARHR118630 Cardamine hirsuta HOM05D003776 ORTHO05D004459 0.0e+00 3424.0 1870 94.1
Sp4g09050 Schrenkiella parvula HOM05D003776 ORTHO05D004459 0.0e+00 3390.5 1871 93.1
Thhalv10002339m.g Eutrema salsugineum HOM05D003776 ORTHO05D004459 0.0e+00 3288.4 1871 90.2
BraA07t29494Z Brassica rapa HOM05D003776 ORTHO05D004459 0.0e+00 3270.3 1910 89.1
A07p17720 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 3258.0 1876 90.0
C07p25670 Brassica napus HOM05D003776 ORTHO05D004459 0.0e+00 3240.7 1876 89.5
BolC7t43085H Brassica oleracea HOM05D003776 ORTHO05D004459 0.0e+00 3236.0 1877 89.5
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 0.0e+00 3100.8 1873 85.2
THA.LOC104808989 Tarenaya hassleriana HOM05D003776 ORTHO05D004459 0.0e+00 3019.6 1877 81.8
Thecc.09G126200 Theobroma cacao HOM05D003776 ORTHO05D004459 0.0e+00 2620.1 1882 71.3
Atru.chr7.1164 Acer truncatum HOM05D003776 ORTHO05D004459 0.0e+00 2614.0 1884 70.5
MD02G1032900 Malus domestica HOM05D003776 ORTHO05D004459 0.0e+00 2588.9 1880 69.7
Cfa003371 Carpinus fangiana HOM05D003776 ORTHO05D004459 0.0e+00 2572.3 1883 69.5
Prupe.7G242500 Prunus persica HOM05D003776 ORTHO05D004459 0.0e+00 2551.5 1882 68.7
GSVIVG01015528001 Vitis vinifera HOM05D003776 ORTHO05D004459 0.0e+00 2549.6 1887 68.6
TWI34G1787 Tripterygium wilfordii HOM05D003776 ORTHO05D004459 0.0e+00 2546.2 1881 68.8
Manes.05G119700 Manihot esculenta HOM05D003776 ORTHO05D004459 0.0e+00 2544.2 1884 68.5
CANSAT11G0130 Cannabis sativa HOM05D003776 ORTHO05D004459 0.0e+00 2535.0 1882 68.2
RcHm_v2.0_Chr2g0088511 Rosa chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2533.8 1883 68.3
FvH4_1g03320 Fragaria vesca HOM05D003776 ORTHO05D004459 0.0e+00 2528.1 1883 67.9
FAN26G1438 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2520.0 1883 67.6
Gorai.001G042000 Gossypium raimondii HOM05D003776 ORTHO05D004459 0.0e+00 2516.9 1899 68.6
FAN23G1640 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2504.9 1883 67.4
Potri.006G119600 Populus trichocarpa HOM05D003776 ORTHO05D004459 0.0e+00 2504.6 1886 68.0
Glyma.06G222100 Glycine max HOM05D003776 ORTHO05D004459 0.0e+00 2494.9 1886 67.2
Rhsim03G0247900 Rhododendron simsii HOM05D003776 ORTHO05D004459 0.0e+00 2486.8 1911 67.4
TAR625G0211 Trochodendron aralioides HOM05D003776 ORTHO05D004459 0.0e+00 2484.9 1886 67.1
Lj3g0001115 Lotus japonicus HOM05D003776 ORTHO05D004459 0.0e+00 2483.8 1887 67.1
Haze_25580 Corylus avellana HOM05D003776 ORTHO05D004459 0.0e+00 2472.2 1916 66.9
Dinv36529 Davidia involucrata HOM05D003776 ORTHO05D004459 0.0e+00 2472.2 1910 67.3
FAN28G2120 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2466.0 1883 66.5
Phvul.009G198200 Phaseolus vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2462.2 1886 67.0
Ca_14403_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 0.0e+00 2457.2 1891 67.0
Lalb_Chr11g0072121 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 2457.2 1889 66.5
Eucgr.C04218 Eucalyptus grandis HOM05D003776 ORTHO05D004459 0.0e+00 2455.6 1882 66.8
Nn8g39448 Nelumbo nucifera HOM05D003776 ORTHO05D004459 0.0e+00 2455.6 1884 66.6
Medtr7g099880 Medicago truncatula HOM05D003776 ORTHO05D004459 0.0e+00 2449.9 1896 66.7
Psat1g024680 Pisum sativum HOM05D003776 ORTHO05D004459 0.0e+00 2446.0 1895 66.2
TPR.G21471 Trifolium pratense HOM05D003776 ORTHO05D004459 0.0e+00 2443.7 1895 66.3
FAN19G1245 Fragaria x ananassa HOM05D003776 ORTHO05D004459 0.0e+00 2442.5 1889 66.0
vmacro06129 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 0.0e+00 2432.9 1946 65.5
Sabra06G0094200 Salix brachista HOM05D003776 ORTHO05D004459 0.0e+00 2424.0 2016 63.6
Sed0006794 Sechium edule HOM05D003776 ORTHO05D004459 0.0e+00 2421.0 1886 65.2
CsaV3_2G002830 Cucumis sativus L. HOM05D003776 ORTHO05D004459 0.0e+00 2410.2 1885 64.9
Duzib168G2222 Durio zibethinus HOM05D003776 ORTHO05D004459 0.0e+00 2409.8 1888 66.7
Sopen12g002420 Solanum pennellii HOM05D003776 ORTHO05D004459 0.0e+00 2402.1 1880 65.4
Solyc12g006480.2 Solanum lycopersicum HOM05D003776 ORTHO05D004459 0.0e+00 2395.5 1880 65.4
PGR102G3028 Punica granatum HOM05D003776 ORTHO05D004459 0.0e+00 2387.8 1887 64.8
Cc06_g08530 Coffea canephora HOM05D003776 ORTHO05D004459 0.0e+00 2376.7 1884 64.3
Aqoxy7G02178 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2371.3 1884 65.0
Sc08g0006640 Simmondsia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 2363.6 1884 63.7
Aqoxy3G01756 Aquilegia oxysepala HOM05D003776 ORTHO05D004459 0.0e+00 2348.5 1884 64.5
ECA234G1804 Erigeron canadensis HOM05D003776 ORTHO05D004459 0.0e+00 2348.5 1881 63.5
HanXRQChr10g0315491 Helianthus annuus HOM05D003776 ORTHO05D004459 0.0e+00 2334.3 1871 64.3
MSTRG.19598 Avicennia marina HOM05D003776 ORTHO05D004459 0.0e+00 2333.5 1881 63.3
QL02p088328 Quercus lobata HOM05D003776 ORTHO05D004459 0.0e+00 2325.8 1711 69.7
Lsat_1_v5_gn_5_96021 Lactuca sativa HOM05D003776 ORTHO05D004459 0.0e+00 2313.9 1885 62.9
PSO455G0084 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2312.3 1893 63.3
Nitab4.5_0002658g0150 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 2310.8 1894 63.4
Peaxi162Scf01211g00016 Petunia axillaris HOM05D003776 ORTHO05D004459 0.0e+00 2305.8 1950 61.9
PSO170G4267 Papaver somniferum HOM05D003776 ORTHO05D004459 0.0e+00 2299.6 1888 63.3
Migut.J01158 Erythranthe guttata HOM05D003776 ORTHO05D004459 0.0e+00 2296.9 1879 61.8
DCAR_017818 Daucus carota HOM05D003776 ORTHO05D004459 0.0e+00 2283.4 1947 61.8
EL10Ac8g18652 Beta vulgaris HOM05D003776 ORTHO05D004459 0.0e+00 2276.1 1905 61.9
VMungo1309G0107 Vigna mungo HOM05D003776 ORTHO05D004459 0.0e+00 2253.0 2314 53.9
MELO3C004510.2 Cucumis melo HOM05D003776 ORTHO05D004459 0.0e+00 2244.5 2017 58.7
Hund09133 Selenicereus undatus HOM05D003776 ORTHO05D004459 0.0e+00 2231.4 1886 61.6
AUR62013362 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2220.3 1887 61.0
CiPaw.03G244000 Carya illinoinensis HOM05D003776 ORTHO05D004459 0.0e+00 2207.6 1629 68.9
ClCG11G003010 Citrullus lanatus HOM05D003776 ORTHO05D004459 0.0e+00 2206.4 1880 61.3
Gohir.A07G035800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2181.8 1583 70.3
AUR62011127 Chenopodium quinoa HOM05D003776 ORTHO05D004459 0.0e+00 2152.5 1884 59.3
Lj7C629G11 Lonicera japonica HOM05D003776 ORTHO05D004459 0.0e+00 2146.7 1923 59.5
Ciclev10007244m.g Citrus clementina HOM05D003776 ORTHO05D004459 0.0e+00 2033.5 1498 69.5
Gohir.D07G039800 Gossypium hirsutum HOM05D003776 ORTHO05D004459 0.0e+00 2017.7 1470 70.5
ATR0322G072 Amborella trichopoda HOM05D003776 ORTHO05D004459 0.0e+00 1817.7 1586 59.3
arahy.Tifrunner.gnm1.ann1.GK8SHH Arachis hypogaea HOM05D003776 ORTHO05D004459 0.0e+00 1814.7 1457 64.4
Oeu055885.1 Olea europaea HOM05D003776 ORTHO05D004459 0.0e+00 1732.6 1425 62.2
Pp3c4_20350 Physcomitrium patens HOM05D003776 ORTHO05D004459 0.0e+00 1687.9 1914 47.8
COL.COLO4_35084 Corchorus olitorius HOM05D003776 ORTHO05D004459 0.0e+00 1664.8 1185 70.2
Mapoly0052s0095 Marchantia polymorpha HOM05D003776 ORTHO05D004459 0.0e+00 1615.1 1907 45.8
AagrBONN_evm.TU.Sc2ySwM_228.87 Anthoceros agrestis HOM05D003776 ORTHO05D004459 0.0e+00 1599.7 1910 46.1
Nitab4.5_0008846g0010 Nicotiana tabacum HOM05D003776 ORTHO05D004459 0.0e+00 1555.8 1421 58.2
Zm00001eb235620 Zea mays HOM05D003776 ORTHO05D004459 0.0e+00 1546.6 1439 56.0
SMO347G0235 Selaginella moellendorffii HOM05D003776 ORTHO05D004459 0.0e+00 1480.3 1925 43.7
Actinidia26393 Actinidia chinensis HOM05D003776 ORTHO05D004459 0.0e+00 1422.9 1884 46.4
Ah.09g226230 Amaranthus hybridus HOM05D003776 ORTHO05D004459 0.0e+00 1357.4 1217 57.0
Os02g0202250 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 0.0e+00 1288.1 1233 54.4
CBR_g37692 Chara braunii HOM05D003776 ORTHO05D004459 0.0e+00 1264.2 1869 39.4
Lalb_Chr08g0234831 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1169.5 840 68.1
Lalb_Chr08g0234811 Lupinus albus HOM05D003776 ORTHO05D004459 0.0e+00 1168.7 955 64.7
CDE02G1576 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 0.0e+00 1154.8 1114 57.1
RcHm_v2.0_Chr2g0152361 Rosa chinensis HOM05D003776 ORTHO05D004459 1.7e-306 1057.0 1637 42.5
HPP92_008667 Vanilla planifolia HOM05D003776 ORTHO05D004459 4.1e-300 1035.8 1235 47.1
CDE02G1439 Ceratophyllum demersum HOM05D003776 ORTHO05D004459 2.7e-280 969.9 780 62.2
RcHm_v2.0_Chr2g0152391 Rosa chinensis HOM05D003776 ORTHO05D004459 9.8e-278 961.4 1637 39.9
unitig_26.g8982 Utricularia gibba HOM05D003776 ORTHO05D004459 1.8e-263 914.1 783 57.7
HPP92_008649 Vanilla planifolia HOM05D003776 ORTHO05D004459 2.3e-242 844.0 739 56.8
Duzib187G1323 Durio zibethinus HOM05D003776 ORTHO05D004459 1.1e-233 815.1 697 62.4
Ah.09g226220 Amaranthus hybridus HOM05D003776 ORTHO05D004459 1.3e-229 801.6 690 61.3
FvH4_6g38790 Fragaria vesca HOM05D003776 ORTHO05D004459 3.5e-211 740.3 1005 45.1
Pp3c23_3420 Physcomitrium patens HOM05D003776 ORTHO05D004459 2.1e-195 688.0 1029 39.5
CAN.G816.2 Capsicum annuum HOM05D003776 ORTHO05D004459 2.5e-193 681.0 602 60.3
Pp3c20_13260 Physcomitrium patens HOM05D003776 ORTHO05D004459 9.7e-193 679.1 1041 38.9
Cpa.g.sc75.31 Carica papaya HOM05D003776 ORTHO05D004459 2.2e-189 667.9 518 67.2
SEGI_34338 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 5.1e-186 656.8 702 50.7
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 3.0e-170 604.4 512 62.7
Hma1.2p1_0018F.1_g012430 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 9.1e-159 566.2 491 62.3
Os02g0202300 Oryza sativa ssp. japonica HOM05D003776 ORTHO05D004459 1.2e-123 449.5 400 56.8
Cpa.g.c32453 Carica papaya HOM05D003776 ORTHO05D004459 5.4e-111 407.5 296 68.6
arahy.Tifrunner.gnm1.ann1.6DBV70 Arachis hypogaea HOM05D003776 ORTHO05D004459 2.8e-107 395.2 424 54.2
Cpa.g.sc75.30 Carica papaya HOM05D003776 ORTHO05D004459 3.1e-106 391.7 408 54.7
CiPaw.03G243900 Carya illinoinensis HOM05D003776 ORTHO05D004459 4.5e-89 334.7 228 74.1
HanXRQChr12g0373951 Helianthus annuus HOM05D003776 ORTHO05D004459 1.2e-86 326.6 329 55.3
Hma1.2p1_0018F.1_g012440 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 2.7e-86 325.5 210 76.7
Psat0s3979g0040 Pisum sativum HOM05D003776 ORTHO05D004459 3.1e-82 312.0 325 53.5
HanXRQChr04g0119281 Helianthus annuus HOM05D003776 ORTHO05D004459 4.1e-82 311.6 330 54.8
FAN19G2182 Fragaria x ananassa HOM05D003776 ORTHO05D004459 4.6e-78 298.1 277 55.6
Hma1.2p1_2368F.1_g320720 Hydrangea macrophylla HOM05D003776 ORTHO05D004459 2.3e-77 295.8 314 56.4
HPP92_008648 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.1e-76 293.5 355 46.5
Lsat_1_v5_gn_7_7080 Lactuca sativa HOM05D003776 ORTHO05D004459 4.3e-76 291.6 307 51.5
Oeu055886.1 Olea europaea HOM05D003776 ORTHO05D004459 2.2e-72 279.3 312 52.2
Ca_29538_v3 Cicer arietinum L. HOM05D003776 ORTHO05D004459 3.6e-70 271.9 266 60.9
QL02p088302 Quercus lobata HOM05D003776 ORTHO05D004459 2.0e-65 256.1 176 73.9
SEGI_08250 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.8e-58 233.0 209 58.4
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 1.2e-57 230.3 227 52.4
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 1.2e-57 230.3 227 52.4
SHI03382 Sapria himalayana HOM05D003776 ORTHO05D004459 6.1e-54 218.0 212 58.0
FvH4_6g38782 Fragaria vesca HOM05D003776 ORTHO05D004459 1.7e-48 199.9 385 37.1
Lsat_1_v5_gn_3_39400 Lactuca sativa HOM05D003776 ORTHO05D004459 2.9e-48 199.1 216 50.5
RcHm_v2.0_Chr5g0007291 Rosa chinensis HOM05D003776 ORTHO05D004459 2.5e-47 196.1 330 40.0
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 3.2e-47 195.7 277 42.2
PRCOL_00003394 Prasinoderma coloniale HOM05D003776 ORTHO05D004459 7.2e-47 194.5 1722 21.9
Peaxi162Scf00574g00927 Petunia axillaris HOM05D003776 ORTHO05D004459 1.4e-45 190.3 297 39.7
RcHm_v2.0_Chr5g0007331 Rosa chinensis HOM05D003776 ORTHO05D004459 8.6e-40 171.0 402 35.3
Psat7g006280 Pisum sativum HOM05D003776 ORTHO05D004459 1.5e-36 160.2 126 65.1
Psat0s1308g0040 Pisum sativum HOM05D002636 ORTHO05D004459 3.4e-36 159.1 126 64.3
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 3.7e-35 155.6 155 58.7
Actinidia07427 Actinidia chinensis HOM05D003776 ORTHO05D004459 1.6e-30 140.2 151 55.6
SEGI_13925 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 2.1e-30 139.8 124 58.1
Cpa.g.c42453 Carica papaya HOM05D003776 ORTHO05D004459 4.0e-29 135.6 77 77.9
ATR0322G028 Amborella trichopoda HOM05D003776 ORTHO05D004459 8.9e-29 134.4 166 50.0
Lsat_1_v5_gn_5_62781 Lactuca sativa HOM05D003776 ORTHO05D004459 1.5e-28 133.7 315 29.5
Psat5g250280 Pisum sativum HOM05D003776 ORTHO05D004459 3.4e-28 132.5 97 67.0
Cpa.g.c37328 Carica papaya HOM05D003776 ORTHO05D004459 9.8e-28 131.0 75 84.0
MCO11G810 Micromonas commoda HOM05D003776 ORTHO05D004459 9.8e-28 131.0 772 22.2
SHI03385 Sapria himalayana HOM05D003776 ORTHO05D004459 3.5e-25 122.5 117 55.6
RcHm_v2.0_Chr3g0479611 Rosa chinensis HOM05D003776 ORTHO05D004459 4.6e-25 122.1 97 60.8
Cre13.g578100 Chlamydomonas reinhardtii HOM05D003776 ORTHO05D004459 1.5e-23 117.1 960 23.2
MD16G1253500 Malus domestica HOM05D003776 ORTHO05D004459 2.5e-23 116.3 105 56.2
ECA246G1679 Erigeron canadensis HOM05D003776 ORTHO05D004459 2.3e-21 109.8 147 45.6
Cpa.g.sc75.37 Carica papaya HOM05D003776 ORTHO05D004459 3.1e-21 109.4 81 69.1
ATR0322G071 Amborella trichopoda HOM05D003776 ORTHO05D004459 5.4e-18 98.6 73 67.1
RcHm_v2.0_Chr5g0007211 Rosa chinensis HOM05D003776 ORTHO05D004459 3.9e-16 92.4 56 78.6
arahy.Tifrunner.gnm1.ann1.HIW0J1 Arachis hypogaea HOM05D003776 ORTHO05D004459 3.3e-15 89.4 55 74.5
SEGI_04425 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 3.3e-15 89.4 100 47.0
Peaxi162Scf00574g00919 Petunia axillaris HOM05D003776 ORTHO05D004459 2.8e-14 86.3 100 51.0
Peaxi162Scf00062g02012 Petunia axillaris HOM05D003776 ORTHO05D004459 4.7e-14 85.5 100 50.0
Actinidia07426 Actinidia chinensis HOM05D003776 ORTHO05D004459 8.4e-11 74.7 83 49.4
MBI13_g38968_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 1.4e-10 73.9 46 76.1
HPP92_008668 Vanilla planifolia HOM05D003776 ORTHO05D004459 1.4e-10 73.9 105 41.0
CBR_g76107 Chara braunii HOM05D003776 ORTHO05D004459 1.9e-10 73.6 64 51.6
SEGI_19045 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.9e-10 73.6 66 59.1
SalBow1G5037 Salvia bowleyana HOM05D001898 ORTHO05D002580 2.1e-09 70.1 37 81.1
SHI03418 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-09 69.7 144 36.8
PSO478G0731 Papaver somniferum HOM05D003776 ORTHO05D004459 3.5e-09 69.3 70 52.9
RcHm_v2.0_Chr5g0007271 Rosa chinensis HOM05D003776 ORTHO05D004459 6.6e-08 65.1 49 61.2
SEGI_27908 Sequoiadendron giganteum HOM05D003776 ORTHO05D004459 1.1e-07 64.3 43 60.5
RcHm_v2.0_Chr5g0007071 Rosa chinensis HOM05D003776 ORTHO05D004459 1.5e-07 63.9 44 70.5
Prupe.1G010000 Prunus persica HOM05D003776 ORTHO05D004459 3.3e-07 62.8 60 58.3
CAN.G1024.1 Capsicum annuum HOM05D003776 ORTHO05D002238 7.3e-07 61.6 113 36.3
SalBow8G3232 Salvia bowleyana HOM05D002512 ORTHO05D002660 9.6e-07 61.2 34 76.5
MBI06_g09275_MAGBIO Magnolia biondii HOM05D003776 ORTHO05D004459 2.1e-06 60.1 39 71.8


User provided reference genes

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