Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 3.9e-117 424.9 221 100.0
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 4.8e-115 417.9 221 98.6
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 1.3e-112 409.8 222 96.8
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 3.8e-112 408.3 222 95.9
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 1.2e-110 403.3 238 90.8
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 3.1e-106 388.7 221 92.3
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 9.0e-106 387.1 221 92.3
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.0e-105 386.0 212 94.8
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 3.2e-103 378.6 221 90.0
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 1.1e-98 363.6 224 84.4
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 1.8e-98 362.8 221 86.4
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 2.6e-97 359.0 221 85.5
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 5.8e-97 357.8 221 85.5
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 5.8e-97 357.8 221 85.5
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.5e-84 316.6 187 87.2
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 4.5e-81 305.1 186 87.1
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 3.6e-70 268.9 221 63.3
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 6.1e-70 268.1 210 65.7
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.0e-69 267.3 224 62.5
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 1.1e-68 263.8 221 62.4
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 7.4e-68 261.2 225 62.2
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 1.7e-67 260.0 226 61.9
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 3.7e-67 258.8 225 59.1
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 1.1e-66 257.3 228 61.0
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 1.8e-66 256.5 219 59.4
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 4.1e-66 255.4 223 61.0
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 1.6e-65 253.4 154 89.0
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 2.0e-65 253.1 221 59.7
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 3.5e-65 252.3 225 57.8
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 4.5e-65 251.9 223 57.8
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 7.7e-65 251.1 220 57.3
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 7.7e-65 251.1 221 59.3
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 7.7e-65 251.1 221 59.3
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 1.0e-64 250.8 229 58.5
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 1.3e-64 250.4 225 59.1
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 1.7e-64 250.0 235 56.2
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 1.7e-64 250.0 221 57.5
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 6.5e-64 248.1 210 59.5
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 6.5e-64 248.1 229 57.2
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 8.5e-64 247.7 217 59.4
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 1.1e-63 247.3 231 59.7
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 1.1e-63 247.3 228 57.9
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 1.1e-63 247.3 219 58.0
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 1.5e-63 246.9 232 58.6
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 2.5e-63 246.1 208 62.5
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 2.5e-63 246.1 228 58.3
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 4.2e-63 245.4 227 58.1
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 7.2e-63 244.6 218 60.1
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 1.2e-62 243.8 230 57.4
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 2.7e-62 242.7 218 60.1
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 3.6e-62 242.3 226 58.0
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 3.6e-62 242.3 217 58.1
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 6.1e-62 241.5 219 59.4
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 8.0e-62 241.1 224 58.0
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 1.0e-61 240.7 218 60.1
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 1.0e-61 240.7 217 58.1
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 1.8e-61 240.0 217 57.1
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 2.3e-61 239.6 218 59.2
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 4.0e-61 238.8 217 57.1
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 8.8e-61 237.7 216 56.0
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 1.1e-60 237.3 225 58.2
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 1.5e-60 236.9 217 57.1
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 2.0e-60 236.5 222 56.3
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 2.6e-60 236.1 240 52.5
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 4.4e-60 235.3 224 58.0
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 4.4e-60 235.3 232 53.0
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 5.7e-60 235.0 211 57.8
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 7.5e-60 234.6 270 51.5
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 7.5e-60 234.6 182 64.3
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 1.7e-59 233.4 190 66.3
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 1.7e-59 233.4 212 54.2
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 2.2e-59 233.0 219 53.9
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 2.2e-59 233.0 200 59.5
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 2.2e-59 233.0 226 54.4
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 2.2e-59 233.0 225 56.0
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 2.2e-59 233.0 216 54.6
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.8e-59 232.6 224 58.0
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 8.2e-59 231.1 204 59.8
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.4e-58 230.3 220 56.4
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 1.6e-57 226.9 221 56.6
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 5.9e-57 224.9 186 61.8
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 2.2e-56 223.0 214 57.9
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 5.0e-56 221.9 223 53.8
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 6.5e-56 221.5 247 52.6
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 5.5e-55 218.4 219 53.9
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.5e-55 218.4 224 54.9
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 1.4e-53 213.8 227 53.7
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 1.4e-53 213.8 179 59.8
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 1.8e-53 213.4 227 53.3
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 7.5e-52 208.0 217 51.2
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 1.3e-51 207.2 161 65.8
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 1.1e-50 204.1 227 52.0
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.4e-50 203.8 185 60.0
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 5.4e-50 201.8 208 55.3
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 3.5e-49 199.1 228 49.6
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 2.9e-48 196.1 355 38.9
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 8.5e-48 194.5 205 53.2
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 1.9e-47 193.4 203 52.7
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 5.5e-47 191.8 212 50.0
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 1.2e-46 190.7 160 61.2
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 4.7e-46 188.7 140 67.9
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.8e-45 186.8 256 45.7
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 2.3e-45 186.4 204 51.0
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 4.0e-45 185.7 312 39.4
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 5.2e-45 185.3 219 47.5
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 6.8e-45 184.9 172 58.1
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 2.6e-44 183.0 150 64.7
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 3.4e-44 182.6 176 56.2
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 2.2e-43 179.9 215 47.4
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 1.4e-42 177.2 218 48.6
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 1.2e-41 174.1 218 43.1
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 5.0e-40 168.7 265 42.3
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 2.5e-39 166.4 164 56.7
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 3.3e-39 166.0 171 55.0
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 6.8e-37 158.3 218 43.1
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 2.9e-35 152.9 158 53.8
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 7.0e-34 148.3 176 55.7
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 3.0e-32 142.9 129 62.0
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 2.5e-31 139.8 119 63.9
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 3.1e-29 132.9 131 48.1
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.5e-28 130.6 142 51.4
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 5.8e-28 128.6 221 36.7
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 9.8e-28 127.9 164 48.2
CARHR286240 Cardamine hirsuta HOM05D004725 ORTHO05D005683 9.2e-26 121.3 64 89.1
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 6.6e-24 115.2 104 59.6
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 9.5e-23 111.3 211 36.0
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 2.1e-22 110.2 109 51.4
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 6.2e-22 108.6 92 64.1
CARHR182560 Cardamine hirsuta HOM05D004725 ORTHO05D005683 5.2e-21 105.5 52 98.1
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 8.9e-21 104.8 160 41.2
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.5e-20 104.0 176 41.5
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 9.8e-20 101.3 208 31.7
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 3.2e-18 96.3 99 52.5
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 8.6e-16 88.2 212 30.7
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 3.3e-15 86.3 99 51.5
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 9.5e-15 84.7 84 57.1
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 2.0e-12 77.0 130 39.2
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 3.4e-12 76.3 85 49.4
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 1.4e-10 70.9 212 27.4
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 1.4e-10 70.9 66 57.6
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.2e-09 67.8 80 47.5
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 6.0e-09 65.5 64 51.6
Zm00001eb228430 Zea mays HOM05D004725 ORTHO05D005683 6.0e-09 65.5 86 44.2
Sabra10G0113400 Salix brachista HOM05D004725 ORTHO05D005683 1.7e-08 63.9 150 31.3
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 5.1e-08 62.4 53 62.3
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 9.6e-07 58.2 59 55.9
Atru.chr4.3041 Acer truncatum HOM05D004725 ORTHO05D005683 6.2e-06 55.5 62 48.4
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 8.1e-06 55.1 76 42.1


User provided reference genes

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