Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 0.0e+00 1547.3 820 100.0
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 0.0e+00 1456.4 824 93.0
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 0.0e+00 1442.2 825 92.1
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 0.0e+00 1382.1 824 88.7
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 0.0e+00 1372.8 823 87.7
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 0.0e+00 1361.7 824 87.9
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 0.0e+00 1346.3 822 86.9
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 0.0e+00 1296.6 828 84.8
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 0.0e+00 1296.6 828 84.8
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 0.0e+00 1296.6 828 84.8
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 0.0e+00 1285.0 827 84.0
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 0.0e+00 1284.6 827 83.9
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 0.0e+00 1248.0 825 80.4
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 0.0e+00 1174.1 827 75.6
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 6.4e-282 974.2 823 62.1
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 1.4e-281 973.0 826 61.5
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 1.3e-274 949.9 823 59.7
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 1.3e-274 949.9 823 61.6
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 8.4e-274 947.2 827 62.9
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 2.4e-273 945.7 820 61.3
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 6.0e-272 941.0 825 62.2
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 2.3e-271 939.1 825 61.5
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 1.5e-270 936.4 825 61.7
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 3.3e-270 935.3 825 60.7
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 5.6e-270 934.5 823 60.1
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 7.3e-270 934.1 779 62.0
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 9.6e-270 933.7 825 60.8
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 6.2e-269 931.0 824 60.0
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 2.4e-268 929.1 825 60.0
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 5.2e-268 927.9 825 60.2
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 1.2e-267 926.8 823 60.0
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 1.4e-265 919.8 825 59.6
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.4e-265 919.8 825 60.4
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 2.4e-265 919.1 811 60.5
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 9.3e-265 917.1 825 59.5
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 9.3e-265 917.1 813 59.4
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 1.6e-264 916.4 826 59.2
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 2.3e-263 912.5 826 59.2
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 3.0e-263 912.1 825 60.2
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 1.5e-262 909.8 825 59.6
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 5.6e-262 907.9 825 59.2
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 9.6e-262 907.1 825 60.1
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 1.3e-261 906.7 808 61.1
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.3e-261 906.7 806 59.7
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 1.5e-259 899.8 826 58.6
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 2.0e-259 899.4 796 60.4
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 3.4e-259 898.7 826 59.2
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 3.4e-259 898.7 796 61.6
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 3.4e-259 898.7 838 58.0
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 4.5e-259 898.3 796 60.9
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 1.3e-258 896.7 796 61.2
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 2.9e-258 895.6 825 58.4
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 8.4e-258 894.0 790 58.9
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 1.6e-256 889.8 826 58.0
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 3.5e-256 888.6 874 56.4
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 6.0e-256 887.9 796 60.7
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 1.0e-255 887.1 788 58.4
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 3.9e-255 885.2 828 59.7
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 1.1e-254 883.6 819 60.1
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 3.3e-254 882.1 801 60.5
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 4.3e-254 881.7 820 59.0
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 2.1e-253 879.4 792 57.3
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 2.4e-252 875.9 820 59.0
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 7.6e-251 870.9 828 57.6
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 9.9e-251 870.5 827 57.4
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 2.9e-250 869.0 829 57.2
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 3.8e-250 868.6 812 59.2
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 1.1e-249 867.1 827 57.2
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 1.9e-249 866.3 828 57.2
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 7.1e-249 864.4 822 56.2
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 2.1e-248 862.8 797 59.3
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 6.0e-248 861.3 809 59.6
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 3.0e-247 859.0 803 57.0
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 6.7e-247 857.8 812 56.5
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 1.5e-246 856.7 819 57.1
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 9.6e-246 854.0 816 55.9
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 4.8e-245 851.7 789 59.8
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 1.1e-244 850.5 803 59.0
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 1.4e-244 850.1 827 58.2
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 2.4e-244 849.4 818 57.6
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 9.0e-244 847.4 788 58.5
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 1.5e-243 846.7 819 56.2
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 1.0e-242 844.0 739 61.2
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 1.0e-242 844.0 813 57.7
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 4.2e-241 838.6 819 56.0
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 8.7e-239 830.9 789 56.5
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 1.3e-237 827.0 827 55.4
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 4.1e-236 822.0 773 57.3
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 1.3e-234 817.0 805 55.9
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 2.9e-234 815.8 850 53.6
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 1.3e-231 807.0 812 56.3
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 9.1e-228 794.3 805 53.3
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 1.6e-211 740.3 814 51.8
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 2.7e-200 703.0 827 49.9
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 3.0e-199 699.5 810 52.0
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 1.3e-197 694.1 620 62.1
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 2.1e-184 650.2 494 72.5
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.8e-183 647.1 649 53.8
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.3e-183 646.7 649 53.8
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 4.4e-174 615.9 637 55.9
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 2.0e-166 590.5 457 68.5
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.3e-165 587.8 458 67.5
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 3.7e-165 586.3 464 67.0
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 2.7e-163 580.1 458 67.0
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 1.3e-162 577.8 458 66.4
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 8.6e-162 575.1 491 61.9
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 3.6e-160 569.7 849 44.1
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 2.6e-158 563.5 565 55.2
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 3.8e-157 559.7 455 65.9
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.7e-155 553.5 454 65.0
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 1.3e-154 551.2 493 61.5
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 3.9e-154 549.7 452 64.2
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 5.6e-153 545.8 482 63.3
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 3.6e-152 543.1 486 59.1
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 4.2e-148 529.6 506 56.3
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 9.3e-148 528.5 467 60.8
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 1.6e-147 527.7 502 56.8
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 2.1e-147 527.3 467 60.6
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 6.0e-147 525.8 467 60.4
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 4.3e-145 519.6 499 55.7
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 2.8e-144 516.9 465 60.9
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 1.8e-143 514.2 499 56.7
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 2.4e-143 513.8 497 54.3
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 2.4e-143 513.8 497 54.3
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 1.2e-142 511.5 450 58.4
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 6.4e-141 505.8 504 53.6
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 1.6e-139 501.1 457 60.0
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 3.9e-138 496.5 471 57.1
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 3.7e-136 490.0 740 42.4
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 1.6e-128 464.5 484 56.4
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 4.5e-126 456.4 412 57.3
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 8.4e-125 452.2 711 42.3
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 2.7e-123 447.2 764 38.9
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 4.3e-121 439.9 750 38.7
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 1.2e-118 431.8 678 40.9
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 4.8e-112 409.8 465 52.3
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.4e-103 380.9 296 67.2
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 4.5e-94 350.1 315 61.6
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 5.3e-87 326.6 461 41.0
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 3.2e-84 317.4 650 35.5
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 2.1e-83 314.7 260 65.8
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.7e-77 295.0 213 74.2
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 8.0e-75 286.2 197 74.6
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 1.1e-60 239.2 359 45.1
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 1.3e-56 225.7 749 28.7
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.0e-49 201.8 143 69.9
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.0e-49 201.8 143 69.9
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 2.3e-45 188.3 361 38.0
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 4.0e-42 177.6 137 62.0
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 1.7e-40 172.2 137 59.9
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 3.8e-40 171.0 452 27.7
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 4.9e-40 170.6 147 57.1
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 8.7e-37 159.8 93 80.6
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 3.6e-27 127.9 95 72.6
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.6e-22 112.5 155 45.2
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 7.9e-22 110.2 155 45.2
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 2.0e-17 95.5 81 48.1
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.1e-12 79.7 58 67.2
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 2.1e-11 75.5 94 46.8


User provided reference genes

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