Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL8G16560 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 7.4e-81 303.9 164 100.0
AL37U10050 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 2.8e-80 302.0 162 100.0
AT5G43720 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 1.1e-76 290.0 162 96.3
CARHR179900 Cardamine hirsuta HOM05D004913 ORTHO05D006150 5.2e-74 281.2 162 92.6
Carub.0008s0491 Capsella rubella HOM05D004913 ORTHO05D006150 1.5e-73 279.6 163 92.0
BcaC06g31682 Brassica carinata HOM05D004913 ORTHO05D006150 4.1e-71 271.6 162 92.0
C07p26280 Brassica napus HOM05D004913 ORTHO05D006150 5.3e-71 271.2 162 91.4
BolC7t43157H Brassica oleracea HOM05D004913 ORTHO05D006150 7.0e-71 270.8 162 90.7
Sp2g08510 Schrenkiella parvula HOM05D004913 ORTHO05D006150 1.7e-69 266.2 162 89.5
Thhalv10003245m.g Eutrema salsugineum HOM05D004913 ORTHO05D006150 2.2e-69 265.8 163 89.0
BraA06t27642Z Brassica rapa HOM05D004913 ORTHO05D006150 6.5e-69 264.2 163 90.2
A06p47740 Brassica napus HOM05D004913 ORTHO05D006150 1.5e-68 263.1 163 89.6
Aa31LG5G3520 Aethionema arabicum HOM05D004913 ORTHO05D006150 1.9e-68 262.7 162 87.7
BcaC03g16589 Brassica carinata HOM05D004913 ORTHO05D006150 2.2e-64 249.2 162 87.0
C02p44080 Brassica napus HOM05D004913 ORTHO05D006150 2.2e-64 249.2 162 87.0
A02p27910 Brassica napus HOM05D004913 ORTHO05D006150 4.8e-64 248.1 162 85.8
BolC2t10451H Brassica oleracea HOM05D004913 ORTHO05D006150 4.8e-64 248.1 162 86.4
BraA02t07829Z Brassica rapa HOM05D004913 ORTHO05D006150 4.8e-64 248.1 162 85.8
THA.LOC104815979 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 2.7e-62 242.3 161 80.7
BcaC06g34634 Brassica carinata HOM05D004913 ORTHO05D006150 5.0e-61 238.0 145 91.0
THA.LOC104826068 Tarenaya hassleriana HOM05D004913 ORTHO05D006150 8.0e-59 230.7 161 77.0
AL1G13830 Arabidopsis lyrata HOM05D004913 ORTHO05D006150 1.8e-58 229.6 162 75.9
AT1G04230 Arabidopsis thaliana HOM05D004913 ORTHO05D006150 6.3e-56 221.1 162 72.8
Carub.0001s0342 Capsella rubella HOM05D004913 ORTHO05D006150 4.1e-55 218.4 162 73.5
Cpa.g.sc58.23 Carica papaya HOM05D004913 ORTHO05D006150 5.4e-55 218.0 161 73.3
CARHR003560 Cardamine hirsuta HOM05D004913 ORTHO05D006150 7.7e-54 214.2 162 71.6
Manes.15G035800 Manihot esculenta HOM05D004913 ORTHO05D006150 1.0e-53 213.8 163 71.8
Oeu032612.1 Olea europaea HOM05D004913 ORTHO05D006150 1.0e-53 213.8 165 72.7
Gohir.D10G152000 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.3e-53 213.4 163 72.4
Gorai.011G170500 Gossypium raimondii HOM05D004913 ORTHO05D006150 1.3e-53 213.4 163 72.4
MBI11_g38514_MAGBIO Magnolia biondii HOM05D004913 ORTHO05D006150 2.9e-53 212.2 166 70.5
CiPaw.02G117800 Carya illinoinensis HOM05D004913 ORTHO05D006150 3.8e-53 211.8 161 70.8
Thecc.04G244000 Theobroma cacao HOM05D004913 ORTHO05D006150 3.8e-53 211.8 163 72.4
GSVIVG01018096001 Vitis vinifera HOM05D004913 ORTHO05D006150 8.6e-53 210.7 161 70.2
Duzib052G0554 Durio zibethinus HOM05D004913 ORTHO05D006150 1.5e-52 209.9 163 71.2
Gohir.A10G114500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 1.5e-52 209.9 163 71.2
Eucgr.H03172 Eucalyptus grandis HOM05D004913 ORTHO05D006150 1.9e-52 209.5 161 70.8
Solyc09g083270.4 Solanum lycopersicum HOM05D004913 ORTHO05D006150 2.5e-52 209.1 163 70.6
Sopen09g032190 Solanum pennellii HOM05D004913 ORTHO05D006150 2.5e-52 209.1 163 70.6
PGSC0003DMG400006092 Solanum tuberosum HOM05D004913 ORTHO05D006150 2.5e-52 209.1 163 70.6
Duzib151G0562 Durio zibethinus HOM05D004913 ORTHO05D006150 3.3e-52 208.8 163 69.9
CsaV3_3G012680 Cucumis sativus L. HOM05D004913 ORTHO05D006150 7.2e-52 207.6 161 71.4
Gorai.006G070100 Gossypium raimondii HOM05D004913 ORTHO05D006150 7.2e-52 207.6 163 71.2
RcHm_v2.0_Chr5g0043971 Rosa chinensis HOM05D004913 ORTHO05D006150 7.2e-52 207.6 162 72.8
TAR636G2191 Trochodendron aralioides HOM05D004913 ORTHO05D006150 7.2e-52 207.6 162 71.6
Ciclev10005381m.g Citrus clementina HOM05D004913 ORTHO05D006150 9.5e-52 207.2 163 72.4
PGR004G2231 Punica granatum HOM05D004913 ORTHO05D006150 9.5e-52 207.2 163 71.8
Manes.03G170000 Manihot esculenta HOM05D004913 ORTHO05D006150 1.6e-51 206.5 163 69.9
Haze_11271 Corylus avellana HOM05D004913 ORTHO05D006150 4.7e-51 204.9 165 67.9
Sed0018032 Sechium edule HOM05D004913 ORTHO05D003182 1.0e-50 203.8 161 67.7
CANSAT78G1520 Cannabis sativa HOM05D004913 ORTHO05D006150 2.3e-50 202.6 162 70.4
MD13G1204100 Malus domestica HOM05D004913 ORTHO05D006150 2.3e-50 202.6 162 69.8
CSS0025455 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D006150 3.0e-50 202.2 169 65.7
Gohir.A09G057300 Gossypium hirsutum HOM05D004913 ORTHO05D006150 3.0e-50 202.2 163 69.9
MSTRG.21888 Avicennia marina HOM05D004913 ORTHO05D006150 4.0e-50 201.8 168 67.3
CAN.G626.13 Capsicum annuum HOM05D004913 ORTHO05D006150 4.0e-50 201.8 163 68.1
Nn1g02556 Nelumbo nucifera HOM05D004913 ORTHO05D006150 5.2e-50 201.4 161 68.3
Cc03_g04640 Coffea canephora HOM05D004913 ORTHO05D006150 6.8e-50 201.1 163 69.3
Potri.008G160800 Populus trichocarpa HOM05D004913 ORTHO05D006150 6.8e-50 201.1 166 67.5
Potri.010G078500 Populus trichocarpa HOM05D004913 ORTHO05D006150 8.9e-50 200.7 167 68.3
SGA_v2.0_scaffold101G29779 Striga asiatica HOM05D004913 ORTHO05D006150 1.5e-49 199.9 166 65.1
vmacro15402 Vaccinium macrocarpon HOM05D004913 ORTHO05D006150 2.0e-49 199.5 168 66.7
CSS0009777 Camellia sinensis var. sinensis HOM05D004913 ORTHO05D003182 2.6e-49 199.1 169 64.5
Sed0027984 Sechium edule HOM05D004913 ORTHO05D006150 2.6e-49 199.1 163 67.5
QL06p015098 Quercus lobata HOM05D004913 ORTHO05D006150 3.4e-49 198.7 167 65.9
Nitab4.5_0000525g0090 Nicotiana tabacum HOM05D004913 ORTHO05D006150 9.8e-49 197.2 174 63.8
Sabra08G0122700 Salix brachista HOM05D004913 ORTHO05D006150 9.8e-49 197.2 166 66.9
Migut.N00232 Erythranthe guttata HOM05D004913 ORTHO05D006150 1.3e-48 196.8 168 64.3
Actinidia05471 Actinidia chinensis HOM05D004913 ORTHO05D006150 1.4e-47 193.4 169 65.1
MD16G1206200 Malus domestica HOM05D004913 ORTHO05D006150 1.4e-47 193.4 161 65.8
Lj3A719T118 Lonicera japonica HOM05D004913 ORTHO05D006150 2.4e-47 192.6 167 65.9
Nitab4.5_0004203g0050 Nicotiana tabacum HOM05D004913 ORTHO05D006150 5.4e-47 191.4 178 60.1
FvH4_3g24470 Fragaria vesca HOM05D004913 ORTHO05D006150 9.2e-47 190.7 161 68.3
MELO3C006479.2 Cucumis melo HOM05D004913 ORTHO05D006150 2.0e-46 189.5 197 56.3
Peaxi162Scf01416g00120 Petunia axillaris HOM05D004913 ORTHO05D006150 2.7e-46 189.1 168 61.3
Prupe.1G027200 Prunus persica HOM05D004913 ORTHO05D006150 1.3e-45 186.8 162 66.0
Phvul.003G138434 Phaseolus vulgaris HOM05D004913 ORTHO05D006150 5.0e-45 184.9 163 64.4
VMungo0720G1087 Vigna mungo HOM05D004913 ORTHO05D006150 1.1e-44 183.7 163 63.8
EL10Ac4g07493 Beta vulgaris HOM05D004913 ORTHO05D006150 5.6e-44 181.4 161 61.5
Dinv44614 Davidia involucrata HOM05D004913 ORTHO05D006150 7.3e-44 181.0 165 63.6
PSO210G5612 Papaver somniferum HOM05D004913 ORTHO05D006150 9.5e-44 180.6 163 62.6
TWI09G0491 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.2e-43 180.3 161 63.4
TWI73G0814 Tripterygium wilfordii HOM05D004913 ORTHO05D006150 1.2e-43 180.3 161 63.4
Migut.G00417 Erythranthe guttata HOM05D004913 ORTHO05D006150 2.8e-43 179.1 167 59.3
Glyma.10G179800 Glycine max HOM05D004913 ORTHO05D006150 1.4e-42 176.8 163 61.3
FAN11G1852 Fragaria x ananassa HOM05D004913 ORTHO05D006150 5.2e-42 174.9 161 64.6
SalBow3G1711 Salvia bowleyana HOM05D004913 ORTHO05D006150 5.2e-42 174.9 183 56.3
arahy.Tifrunner.gnm1.ann1.8JLR9N Arachis hypogaea HOM05D004913 ORTHO05D006150 6.8e-42 174.5 167 59.9
PSO832G0934 Papaver somniferum HOM05D004913 ORTHO05D006150 8.9e-42 174.1 175 58.9
arahy.Tifrunner.gnm1.ann1.9S1KBE Arachis hypogaea HOM05D004913 ORTHO05D006150 1.2e-41 173.7 167 59.9
Glyma.20G210600 Glycine max HOM05D004913 ORTHO05D006150 2.0e-41 172.9 168 60.7
FAN16G1149 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.4e-41 172.2 161 64.0
Lsat_1_v5_gn_5_67500 Lactuca sativa HOM05D004913 ORTHO05D006150 3.4e-41 172.2 165 60.6
unitig_0.g131 Utricularia gibba HOM05D004913 ORTHO05D006150 4.4e-41 171.8 166 54.8
Medtr1g076290 Medicago truncatula HOM05D004913 ORTHO05D006150 5.8e-41 171.4 161 61.5
Lalb_Chr06g0168981 Lupinus albus HOM05D004913 ORTHO05D006150 7.5e-41 171.0 165 61.2
Lalb_Chr21g0311951 Lupinus albus HOM05D004913 ORTHO05D006150 9.8e-41 170.6 164 59.8
HanXRQChr12g0381181 Helianthus annuus HOM05D004913 ORTHO05D006150 1.7e-40 169.9 163 59.5
Lj5g0012164 Lotus japonicus HOM05D004913 ORTHO05D006150 1.7e-40 169.9 163 62.0
Rhsim02G0032600 Rhododendron simsii HOM05D004913 ORTHO05D006150 6.4e-40 167.9 169 58.6
CDE04G3353 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.4e-39 166.8 161 57.1
Ca_09877_v3 Cicer arietinum L. HOM05D004913 ORTHO05D006150 5.4e-39 164.9 162 59.9
Gohir.D09G056500 Gossypium hirsutum HOM05D004913 ORTHO05D006150 5.4e-39 164.9 113 77.0
CDE07G0872 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 9.2e-39 164.1 161 58.4
ECA233G3913 Erigeron canadensis HOM05D004913 ORTHO05D006150 2.7e-38 162.5 165 58.8
HPP92_014140 Vanilla planifolia HOM05D004913 ORTHO05D006150 6.0e-38 161.4 161 56.5
Psat6g114920 Pisum sativum HOM05D004913 ORTHO05D006150 7.8e-38 161.0 161 59.0
AagrBONN_evm.TU.Sc2ySwM_362.2200 Anthoceros agrestis HOM05D004913 ORTHO05D006150 1.3e-37 160.2 170 56.5
CDE06G2453 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 2.3e-37 159.5 165 54.5
FAN25G1200 Fragaria x ananassa HOM05D004913 ORTHO05D006150 2.3e-37 159.5 161 60.9
FAN25G2316 Fragaria x ananassa HOM05D004913 ORTHO05D006150 3.0e-37 159.1 161 60.2
Sc13g0004930 Simmondsia chinensis HOM05D004913 ORTHO05D006150 3.9e-37 158.7 112 73.2
ATR0665G449 Amborella trichopoda HOM05D004913 ORTHO05D006150 8.6e-37 157.5 167 54.5
AUR62041210 Chenopodium quinoa HOM05D004913 ORTHO05D006150 8.6e-37 157.5 162 57.4
CDE07G2030 Ceratophyllum demersum HOM05D004913 ORTHO05D006150 1.1e-36 157.1 162 54.3
DCAR_030710 Daucus carota HOM05D004913 ORTHO05D006150 1.9e-36 156.4 164 54.3
ClCG05G004680 Citrullus lanatus HOM05D000979 ORTHO05D003182 5.6e-36 154.8 128 69.5
FAN21G0973 Fragaria x ananassa HOM05D004913 ORTHO05D006150 8.0e-35 151.0 161 58.4
Os03g0797700 Oryza sativa ssp. japonica HOM05D004913 ORTHO05D006150 2.3e-34 149.4 128 62.5
SHI00581 Sapria himalayana HOM05D004913 ORTHO05D006150 2.3e-34 149.4 139 63.3
Zm00001eb212900 Zea mays HOM05D004913 ORTHO05D006150 3.1e-34 149.1 164 54.3
Aqoxy2G03527 Aquilegia oxysepala HOM05D004913 ORTHO05D006150 1.2e-33 147.1 150 58.0
AUR62040390 Chenopodium quinoa HOM05D004913 ORTHO05D006150 1.3e-32 143.7 110 69.1
Pp3c2_37690 Physcomitrium patens HOM05D004913 ORTHO05D006150 4.9e-32 141.7 180 47.8
PSO210G2862 Papaver somniferum HOM05D004913 ORTHO05D006150 1.9e-31 139.8 171 49.1
Mapoly0010s0154 Marchantia polymorpha HOM05D004913 ORTHO05D006150 1.2e-30 137.1 180 51.1
PSO238G0009 Papaver somniferum HOM05D004913 ORTHO05D006150 1.2e-30 137.1 171 48.5
Hund17874 Selenicereus undatus HOM05D004913 ORTHO05D006150 1.6e-30 136.7 162 52.5
SMO358G0388 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 1.1e-28 130.6 173 48.0
SEGI_31281 Sequoiadendron giganteum HOM05D004913 ORTHO05D006150 6.4e-24 114.8 117 53.8
Ah.13g071550 Amaranthus hybridus HOM05D004913 ORTHO05D006150 6.0e-22 108.2 95 64.2
CBR_g525 Chara braunii HOM05D004913 ORTHO05D006150 3.1e-18 95.9 113 46.0
SMO347G0406 Selaginella moellendorffii HOM05D004913 ORTHO05D006150 6.8e-18 94.7 145 40.0
COL.COLO4_15768 Corchorus olitorius HOM05D000979 ORTHO05D003182 1.2e-17 94.0 163 41.1
Zm00001eb034960 Zea mays HOM05D004913 ORTHO05D006150 1.6e-14 83.6 87 57.5
Cre10.g452600 Chlamydomonas reinhardtii HOM05D004913 ORTHO05D006150 2.6e-09 66.2 185 31.4
GSVIVG01034858001 Vitis vinifera HOM05D004913 ORTHO05D006150 3.8e-08 62.4 59 57.6
MCO11G351 Micromonas commoda HOM05D004913 ORTHO05D006150 1.4e-07 60.5 123 36.6


User provided reference genes

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