Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL851U10010 Arabidopsis lyrata HOM05D008385 ORTHO05D009288 6.3e-112 407.5 217 100.0
AL1G57960 Arabidopsis lyrata HOM05D000803 ORTHO05D009288 1.0e-53 214.2 114 100.0
AT1G50320 Arabidopsis thaliana HOM05D000803 ORTHO05D009288 9.3e-47 191.0 114 89.5
Carub.0001s3942 Capsella rubella HOM05D000803 ORTHO05D009288 2.3e-45 186.4 114 86.8
Sp1g37160 Schrenkiella parvula HOM05D000803 ORTHO05D009288 6.4e-40 168.3 118 80.5
CARHR039580 Cardamine hirsuta HOM05D000803 ORTHO05D009288 5.5e-39 165.2 119 79.8
Thhalv10012400m.g Eutrema salsugineum HOM05D000803 ORTHO05D009288 5.5e-39 165.2 118 78.8
Aa31LG10G3930 Aethionema arabicum HOM05D000803 ORTHO05D009288 1.3e-37 160.6 118 76.3
AL1G57970 Arabidopsis lyrata HOM05D008385 ORTHO05D010806 6.2e-35 151.8 87 88.5
A06p03220 Brassica napus HOM05D000803 ORTHO05D009288 6.9e-34 148.3 118 70.3
C06p05410 Brassica napus HOM05D000803 ORTHO05D009288 6.9e-34 148.3 116 72.4
BolC6t35646H Brassica oleracea HOM05D000803 ORTHO05D009288 1.0e-32 144.4 116 70.7
BraA06t23533Z Brassica rapa HOM05D000803 ORTHO05D009288 1.0e-32 144.4 118 70.3
THA.LOC104826518 Tarenaya hassleriana HOM05D000803 ORTHO05D009288 5.1e-29 132.1 117 63.2
AT1G50340 Arabidopsis thaliana HOM05D008385 ORTHO05D010806 1.4e-26 124.0 86 76.7
AT1G50325 Arabidopsis thaliana HOM05D008385 ORTHO05D010806 4.5e-25 119.0 87 74.7
Thecc.02G157100 Theobroma cacao HOM05D000803 ORTHO05D009288 6.3e-19 98.6 115 52.2
COL.COLO4_33073 Corchorus olitorius HOM05D000803 ORTHO05D009288 5.3e-18 95.5 115 51.3
Duzib132G0129 Durio zibethinus HOM05D000803 ORTHO05D009288 5.9e-17 92.0 120 48.3
Duzib052G0208 Durio zibethinus HOM05D000803 ORTHO05D009288 1.0e-16 91.3 120 50.0
Gohir.A04G109000 Gossypium hirsutum HOM05D000803 ORTHO05D009288 1.3e-16 90.9 118 47.5
Gorai.012G134800 Gossypium raimondii HOM05D000803 ORTHO05D009288 1.3e-16 90.9 118 47.5
Sabra07G0061800 Salix brachista HOM05D000803 ORTHO05D009288 1.3e-16 90.9 119 47.9
Potri.007G074000 Populus trichocarpa HOM05D000803 ORTHO05D009288 3.8e-16 89.4 119 47.1
Gohir.D04G148500 Gossypium hirsutum HOM05D000803 ORTHO05D009288 5.0e-16 89.0 118 47.5
Carub.0001s2729 Capsella rubella HOM05D008385 ORTHO05D010806 1.9e-15 87.0 89 56.2
Nitab4.5_0000069g0180 Nicotiana tabacum HOM05D000803 ORTHO05D009288 2.5e-15 86.7 124 46.0
Nitab4.5_0002387g0050 Nicotiana tabacum HOM05D000803 ORTHO05D009288 3.2e-15 86.3 121 48.8
Peaxi162Scf00021g02221 Petunia axillaris HOM05D000803 ORTHO05D009288 4.2e-15 85.9 121 46.3
Cfa008764 Carpinus fangiana HOM05D000803 ORTHO05D009288 5.5e-15 85.5 117 47.0
Psat6g233480 Pisum sativum HOM05D000803 ORTHO05D009288 9.4e-15 84.7 119 48.7
Cpa.g.c31520 Carica papaya HOM05D000803 ORTHO05D009288 1.6e-14 84.0 49 73.5
TWI74G0120 Tripterygium wilfordii HOM05D000803 ORTHO05D009288 1.6e-14 84.0 117 45.3
Haze_11775 Corylus avellana HOM05D000803 ORTHO05D009288 2.1e-14 83.6 116 42.2
CiPaw.05G170800 Carya illinoinensis HOM05D000803 ORTHO05D009288 2.7e-14 83.2 114 43.0
Cc00_g16790 Coffea canephora HOM05D000803 ORTHO05D009288 4.6e-14 82.4 115 44.3
CSS0035072 Camellia sinensis var. sinensis HOM05D000803 ORTHO05D009288 6.1e-14 82.0 114 44.7
CSS0035181 Camellia sinensis var. sinensis HOM05D000803 ORTHO05D009288 6.1e-14 82.0 114 44.7
Carub.0008s1110 Capsella rubella HOM05D008385 ORTHO05D010806 7.9e-14 81.6 86 48.8
Carub.0008s1111 Capsella rubella HOM05D008385 ORTHO05D010806 7.9e-14 81.6 86 48.8
Atru.chr11.1152 Acer truncatum HOM05D000803 ORTHO05D009288 3.0e-13 79.7 117 42.7
Prupe.1G070700 Prunus persica HOM05D000803 ORTHO05D009288 3.9e-13 79.3 125 45.6
ECA246G5126 Erigeron canadensis HOM05D000001 ORTHO05D000003 5.1e-13 79.0 73 52.1
RcHm_v2.0_Chr4g0398691 Rosa chinensis HOM05D000803 ORTHO05D009288 6.7e-13 78.6 128 42.2
Actinidia04326 Actinidia chinensis HOM05D000803 ORTHO05D009288 8.8e-13 78.2 117 41.0
DCAR_002593 Daucus carota HOM05D000803 ORTHO05D009288 8.8e-13 78.2 111 42.3
Solyc01g008250.3 Solanum lycopersicum HOM05D000803 ORTHO05D009288 1.1e-12 77.8 78 53.8
PGSC0003DMG400016361 Solanum tuberosum HOM05D000803 ORTHO05D009288 1.1e-12 77.8 110 44.5
TPR.G4141 Trifolium pratense HOM05D000803 ORTHO05D009288 1.1e-12 77.8 57 64.9
vmacro15984 Vaccinium macrocarpon HOM05D000803 ORTHO05D009288 1.1e-12 77.8 115 41.7
VMungo0720G1024 Vigna mungo HOM05D000803 ORTHO05D009288 2.0e-12 77.0 78 53.8
FAN22G0075 Fragaria x ananassa HOM05D000803 ORTHO05D009288 4.4e-12 75.9 124 41.9
Medtr1g114290 Medicago truncatula HOM05D000803 ORTHO05D009288 5.7e-12 75.5 65 56.9
QL03p046068 Quercus lobata HOM05D000803 ORTHO05D009288 5.7e-12 75.5 116 44.8
QL03p046129 Quercus lobata HOM05D000803 ORTHO05D009288 5.7e-12 75.5 116 44.8
MD15G1433100 Malus domestica HOM05D000803 ORTHO05D009288 9.7e-12 74.7 111 40.5
PGR044G0351 Punica granatum HOM05D000803 ORTHO05D009288 1.3e-11 74.3 112 43.8
Eucgr.J00880 Eucalyptus grandis HOM05D000803 ORTHO05D009288 1.7e-11 73.9 118 44.1
CAN.G282.48 Capsicum annuum HOM05D000803 ORTHO05D009288 2.2e-11 73.6 121 45.5
Lj5g0005958 Lotus japonicus HOM05D000803 ORTHO05D009288 2.8e-11 73.2 116 37.1
FvH4_4g06760 Fragaria vesca HOM05D000803 ORTHO05D009288 3.7e-11 72.8 120 44.2
FAN12G0291 Fragaria x ananassa HOM05D000803 ORTHO05D009288 3.7e-11 72.8 120 44.2
Phvul.007G015500 Phaseolus vulgaris HOM05D000803 ORTHO05D009288 3.7e-11 72.8 110 45.5
Sc02g0004820 Simmondsia chinensis HOM05D000803 ORTHO05D009288 3.7e-11 72.8 71 53.5
TAR622G1240 Trochodendron aralioides HOM05D000803 ORTHO05D009288 3.7e-11 72.8 118 41.5
Aqoxy7G01361 Aquilegia oxysepala HOM05D000803 ORTHO05D009288 6.3e-11 72.0 50 66.0
Sopen01g003770 Solanum pennellii HOM05D000803 ORTHO05D009288 6.3e-11 72.0 113 44.2
Ca_11227_v3 Cicer arietinum L. HOM05D006642 ORTHO05D008856 8.2e-11 71.6 121 38.8
Lj3C848G3 Lonicera japonica HOM05D007202 ORTHO05D009125 8.2e-11 71.6 121 44.6
Glyma.20G104000 Glycine max HOM05D000803 ORTHO05D009288 1.1e-10 71.2 52 57.7
SalBow2G0636 Salvia bowleyana HOM05D000803 ORTHO05D009288 1.1e-10 71.2 52 61.5
FAN07G2540 Fragaria x ananassa HOM05D000803 ORTHO05D009288 1.4e-10 70.9 120 44.2
arahy.Tifrunner.gnm1.ann1.NS7DLW Arachis hypogaea HOM05D000803 ORTHO05D009288 1.8e-10 70.5 102 44.1
MSTRG.13680 Avicennia marina HOM05D000803 ORTHO05D009288 1.8e-10 70.5 106 41.5
Ciclev10032824m.g Citrus clementina HOM05D000803 ORTHO05D009288 1.8e-10 70.5 124 39.5
SGA_v2.0_scaffold306G48029 Striga asiatica HOM05D000803 ORTHO05D009288 2.4e-10 70.1 99 44.4
arahy.Tifrunner.gnm1.ann1.7N4CEX Arachis hypogaea HOM05D000803 ORTHO05D009288 4.1e-10 69.3 104 42.3
Dinv17639 Davidia involucrata HOM05D000803 ORTHO05D009288 4.1e-10 69.3 113 45.1
Glyma.10G285000 Glycine max HOM05D000803 ORTHO05D009288 4.1e-10 69.3 50 60.0
Os04g0676100 Oryza sativa ssp. japonica HOM05D000803 ORTHO05D009288 5.3e-10 68.9 55 52.7
arahy.Tifrunner.gnm1.ann1.2X0IV6 Arachis hypogaea HOM05D000803 ORTHO05D009288 9.1e-10 68.2 41 68.3
Nn3g18624 Nelumbo nucifera HOM05D000803 ORTHO05D009288 1.2e-09 67.8 101 46.5
AT1G11362 Arabidopsis thaliana HOM05D008385 ORTHO05D010806 2.0e-09 67.0 87 44.8
arahy.Tifrunner.gnm1.ann1.2L9GNP Arachis hypogaea HOM05D000803 ORTHO05D009288 2.0e-09 67.0 48 62.5
CANSAT78G0634 Cannabis sativa HOM05D000803 ORTHO05D009288 2.0e-09 67.0 113 39.8
Migut.O00873 Erythranthe guttata HOM05D000803 ORTHO05D009288 2.0e-09 67.0 100 42.0
Migut.E00687 Erythranthe guttata HOM05D000803 ORTHO05D009288 2.6e-09 66.6 100 42.0
Lalb_Chr02g0143601 Lupinus albus HOM05D000803 ORTHO05D009288 3.4e-09 66.2 98 38.8
Rhsim09G0069900 Rhododendron simsii HOM05D000803 ORTHO05D009288 3.4e-09 66.2 114 40.4
RhsimUnG0173800 Rhododendron simsii HOM05D000803 ORTHO05D009288 3.4e-09 66.2 114 40.4
Lsat_1_v5_gn_3_36620 Lactuca sativa HOM05D000803 ORTHO05D009288 4.5e-09 65.9 128 35.2
Oeu006340.1 Olea europaea HOM05D000803 ORTHO05D009288 7.7e-09 65.1 99 41.4
CDE04G3619 Ceratophyllum demersum HOM05D000803 ORTHO05D009288 1.7e-08 63.9 57 61.4
CDE02G1801 Ceratophyllum demersum HOM05D000803 ORTHO05D009288 3.8e-08 62.8 46 63.0
Thhalv10021581m.g Eutrema salsugineum HOM05D000803 ORTHO05D001162 5.0e-08 62.4 128 36.7
Zm00001eb433660 Zea mays HOM05D000803 ORTHO05D009288 5.0e-08 62.4 52 53.8
ATR0618G274 Amborella trichopoda HOM05D000803 ORTHO05D009288 6.5e-08 62.0 62 50.0
Carub.0001s1097 Capsella rubella HOM05D008385 ORTHO05D010806 8.5e-08 61.6 87 42.5
Zm00001eb066320 Zea mays HOM05D000803 ORTHO05D009288 8.5e-08 61.6 50 54.0
PSO782G1772 Papaver somniferum HOM05D000803 ORTHO05D009288 2.5e-07 60.1 98 34.7
BcaC06g36066 Brassica carinata HOM05D000803 ORTHO05D001162 3.2e-07 59.7 102 34.3
C07p08310 Brassica napus HOM05D000803 ORTHO05D001162 3.2e-07 59.7 102 34.3
A07p05200 Brassica napus HOM05D000803 ORTHO05D001162 5.5e-07 58.9 102 36.3
Thhalv10012260m.g Eutrema salsugineum HOM05D008385 ORTHO05D001819 5.5e-07 58.9 86 43.0
PSO063G3598 Papaver somniferum HOM05D000803 ORTHO05D009288 5.5e-07 58.9 91 36.3
arahy.Tifrunner.gnm1.ann1.6Y22KH Arachis hypogaea HOM05D000803 ORTHO05D009288 7.2e-07 58.5 108 35.2
BraA07t28313Z Brassica rapa HOM05D000803 ORTHO05D001162 7.2e-07 58.5 102 36.3
Rhsim04G0020500 Rhododendron simsii HOM05D000397 ORTHO05D002023 1.6e-06 57.4 96 33.3
SEGI_04482 Sequoiadendron giganteum HOM05D000803 ORTHO05D009288 1.6e-06 57.4 41 56.1
SGA_v2.0_scaffold9G04921 Striga asiatica HOM05D000397 ORTHO05D002023 1.6e-06 57.4 212 27.4
AagrBONN_evm.TU.Sc2ySwM_117.4096 Anthoceros agrestis HOM05D000803 ORTHO05D009288 2.1e-06 57.0 41 58.5
AT3G15360 Arabidopsis thaliana HOM05D000803 ORTHO05D001162 2.7e-06 56.6 132 31.8
BcaB03g16303 Brassica carinata HOM05D000803 ORTHO05D001162 2.7e-06 56.6 110 34.5
BraA09t42161Z Brassica rapa HOM05D000803 ORTHO05D001162 3.6e-06 56.2 107 37.4
Sp3g13610 Schrenkiella parvula HOM05D000803 ORTHO05D001162 3.6e-06 56.2 130 32.3
THA.LOC104810479 Tarenaya hassleriana HOM05D000803 ORTHO05D001162 3.6e-06 56.2 43 51.2
THA.LOC104818072 Tarenaya hassleriana HOM05D000803 ORTHO05D001162 3.6e-06 56.2 43 48.8
HPP92_025993 Vanilla planifolia HOM05D000803 ORTHO05D001162 3.6e-06 56.2 44 50.0
Carub.0003s1508 Capsella rubella HOM05D000803 ORTHO05D001162 4.7e-06 55.8 132 34.1
ClCG08G006360 Citrullus lanatus HOM05D000803 ORTHO05D001162 4.7e-06 55.8 58 43.1
Psat5g229000 Pisum sativum HOM05D000803 ORTHO05D001162 4.7e-06 55.8 44 50.0
TPR.G31512 Trifolium pratense HOM05D000803 ORTHO05D001162 4.7e-06 55.8 44 50.0
Dinv20167 Davidia involucrata HOM05D000463 ORTHO05D001294 6.1e-06 55.5 138 31.2
Potri.011G120700 Populus trichocarpa HOM05D000803 ORTHO05D001162 6.1e-06 55.5 100 32.0
SalBow7G1844 Salvia bowleyana HOM05D000803 ORTHO05D001162 6.1e-06 55.5 97 34.0
SalBow7G3672 Salvia bowleyana HOM05D000803 ORTHO05D001162 6.1e-06 55.5 97 34.0
MBI06_g27502_MAGBIO Magnolia biondii HOM05D000803 ORTHO05D009288 7.9e-06 55.1 112 37.5


User provided reference genes

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