Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G52340 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 7.2e-37 156.8 81 100.0
AL2G18000 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 1.2e-20 102.8 71 78.9
AL3G17700 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 1.2e-20 102.8 71 78.9
AL8G26870 Arabidopsis lyrata HOM05D005376 ORTHO05D006481 8.6e-14 80.1 81 59.3
AT5G52440 Arabidopsis thaliana HOM05D005376 ORTHO05D006481 1.1e-13 79.7 81 59.3
CARHR265430 Cardamine hirsuta HOM05D005376 ORTHO05D006481 2.8e-12 75.1 82 58.5
FvH4_7g29980 Fragaria vesca HOM05D005376 ORTHO05D006481 3.6e-12 74.7 80 55.0
BcaB05g21960 Brassica carinata HOM05D005376 ORTHO05D006481 1.4e-11 72.8 82 57.3
BcaC01g06187 Brassica carinata HOM05D005376 ORTHO05D006481 1.4e-11 72.8 49 83.7
BcaC03g14530 Brassica carinata HOM05D005376 ORTHO05D006481 1.4e-11 72.8 82 57.3
A02p11810 Brassica napus HOM05D005376 ORTHO05D006481 1.4e-11 72.8 82 57.3
C02p19650 Brassica napus HOM05D005376 ORTHO05D006481 1.4e-11 72.8 82 57.3
BolC2t08101H Brassica oleracea HOM05D005376 ORTHO05D006481 1.4e-11 72.8 82 57.3
Sp6g14660 Schrenkiella parvula HOM05D005376 ORTHO05D006481 1.4e-11 72.8 82 57.3
C03p18310 Brassica napus HOM05D005376 ORTHO05D006481 1.8e-11 72.4 82 57.3
BolC3t14229H Brassica oleracea HOM05D005376 ORTHO05D006481 1.8e-11 72.4 82 57.3
Thhalv10014513m.g Eutrema salsugineum HOM05D005376 ORTHO05D006481 1.8e-11 72.4 82 57.3
BraA03t10859Z Brassica rapa HOM05D005376 ORTHO05D006481 3.1e-11 71.6 82 56.1
Carub.0008s1254 Capsella rubella HOM05D005376 ORTHO05D006481 4.0e-11 71.2 82 56.1
Haze_00025 Corylus avellana HOM05D005376 ORTHO05D006481 4.0e-11 71.2 57 64.9
FAN06G2500 Fragaria x ananassa HOM05D005376 ORTHO05D006481 5.2e-11 70.9 80 53.8
FAN06G2733 Fragaria x ananassa HOM05D005376 ORTHO05D006481 5.2e-11 70.9 80 53.8
A03p15670 Brassica napus HOM05D005376 ORTHO05D006481 8.9e-11 70.1 82 56.1
Cfa016268 Carpinus fangiana HOM05D005376 ORTHO05D006481 1.2e-10 69.7 81 51.9
Aa31LG3G8830 Aethionema arabicum HOM05D005376 ORTHO05D006481 1.5e-10 69.3 81 54.3
FAN03G2197 Fragaria x ananassa HOM05D005376 ORTHO05D006481 1.5e-10 69.3 80 52.5
FAN01G1606 Fragaria x ananassa HOM05D005376 ORTHO05D006481 2.0e-10 68.9 80 52.5
FAN03G2430 Fragaria x ananassa HOM05D005376 ORTHO05D006481 2.0e-10 68.9 80 52.5
FAN10G0028 Fragaria x ananassa HOM05D005376 ORTHO05D006481 2.0e-10 68.9 80 52.5
FAN10G2308 Fragaria x ananassa HOM05D005376 ORTHO05D006481 2.0e-10 68.9 80 52.5
Gohir.D09G043122 Gossypium hirsutum HOM05D005376 ORTHO05D006481 2.6e-10 68.6 81 53.1
BcaB01g04203 Brassica carinata HOM05D005376 ORTHO05D006481 3.4e-10 68.2 82 54.9
Cpa.g.sc107.83 Carica papaya HOM05D005376 ORTHO05D006481 3.4e-10 68.2 81 51.9
Ciclev10005655m.g Citrus clementina HOM05D005376 ORTHO05D006481 3.4e-10 68.2 82 53.7
RcHm_v2.0_Chr1g0377931 Rosa chinensis HOM05D005376 ORTHO05D006481 3.4e-10 68.2 80 52.5
THA.LOC104825106 Tarenaya hassleriana HOM05D005376 ORTHO05D006481 3.4e-10 68.2 81 53.1
BraA02t06246Z Brassica rapa HOM05D005376 ORTHO05D006481 4.4e-10 67.8 85 52.9
Gohir.A09G042000 Gossypium hirsutum HOM05D005376 ORTHO05D006481 5.8e-10 67.4 81 51.9
Gorai.006G049600 Gossypium raimondii HOM05D005376 ORTHO05D006481 7.5e-10 67.0 51 72.5
MD07G1276100 Malus domestica HOM05D005376 ORTHO05D006481 9.9e-10 66.6 81 50.6
Potri.015G147100 Populus trichocarpa HOM05D005376 ORTHO05D006481 9.9e-10 66.6 84 47.6
Duzib084G0056 Durio zibethinus HOM05D005376 ORTHO05D006481 1.3e-09 66.2 81 51.9
Dinv35232 Davidia involucrata HOM05D005376 ORTHO05D006481 1.7e-09 65.9 81 49.4
QL09p013410 Quercus lobata HOM05D005376 ORTHO05D006481 1.7e-09 65.9 81 48.1
ECA233G3491 Erigeron canadensis HOM05D005376 ORTHO05D006481 2.2e-09 65.5 79 53.2
HanXRQChr09g0252451 Helianthus annuus HOM05D005376 ORTHO05D006481 2.2e-09 65.5 81 50.6
Duzib205G1046 Durio zibethinus HOM05D005376 ORTHO05D006481 2.9e-09 65.1 81 51.9
Lsat_1_v5_gn_8_6901 Lactuca sativa HOM05D005376 ORTHO05D006481 2.9e-09 65.1 81 49.4
Rhsim03G0188900 Rhododendron simsii HOM05D005376 ORTHO05D006481 2.9e-09 65.1 61 57.4
RhsimUnG0027200 Rhododendron simsii HOM05D005376 ORTHO05D006481 2.9e-09 65.1 61 57.4
TWI23G0148 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 2.9e-09 65.1 81 49.4
COL.COLO4_28026 Corchorus olitorius HOM05D005376 ORTHO05D006481 3.7e-09 64.7 48 72.9
Hma1.2p1_0227F.1_g096040 Hydrangea macrophylla HOM05D005376 ORTHO05D006481 3.7e-09 64.7 61 57.4
Lsat_1_v5_gn_9_57581 Lactuca sativa HOM05D005376 ORTHO05D006481 3.7e-09 64.7 81 50.6
Manes.14G024100 Manihot esculenta HOM05D005376 ORTHO05D006481 3.7e-09 64.7 81 50.6
Atru.chr1.400 Acer truncatum HOM05D005376 ORTHO05D006481 6.4e-09 63.9 74 52.7
Potri.012G144300 Populus trichocarpa HOM05D005376 ORTHO05D006481 6.4e-09 63.9 81 49.4
Sabra12G0108300 Salix brachista HOM05D005376 ORTHO05D006481 6.4e-09 63.9 52 65.4
CANSAT21G2457 Cannabis sativa HOM05D005376 ORTHO05D006481 8.3e-09 63.5 79 51.9
Prupe.2G298400 Prunus persica HOM05D005376 ORTHO05D006481 8.3e-09 63.5 81 50.6
Lj5g0000296 Lotus japonicus HOM05D005376 ORTHO05D006481 1.4e-08 62.8 74 50.0
Oeu004115.1 Olea europaea HOM05D005376 ORTHO05D006481 1.9e-08 62.4 81 48.1
TPR.G27004 Trifolium pratense HOM05D004749 ORTHO05D005995 1.9e-08 62.4 41 75.6
TWI39G0402 Tripterygium wilfordii HOM05D005376 ORTHO05D006481 1.9e-08 62.4 81 46.9
TAR636G3226 Trochodendron aralioides HOM05D005376 ORTHO05D006481 1.9e-08 62.4 46 73.9
Hund04774 Selenicereus undatus HOM05D005376 ORTHO05D006481 2.4e-08 62.0 81 46.9
CSS0038684 Camellia sinensis var. sinensis HOM05D005376 ORTHO05D006481 3.2e-08 61.6 74 50.0
Medtr1g100220 Medicago truncatula HOM05D005376 ORTHO05D006481 3.2e-08 61.6 56 62.5
Psat6g193680 Pisum sativum HOM05D005376 ORTHO05D006481 3.2e-08 61.6 56 64.3
Sc19g0001360 Simmondsia chinensis HOM05D005376 ORTHO05D006481 3.2e-08 61.6 53 62.3
DCAR_009379 Daucus carota HOM05D005376 ORTHO05D006481 4.1e-08 61.2 76 50.0
Oeu022600.1 Olea europaea HOM05D005376 ORTHO05D006481 4.1e-08 61.2 81 49.4
Thecc.03G181600 Theobroma cacao HOM05D005376 ORTHO05D006481 4.1e-08 61.2 48 72.9
CiPaw.06G001400 Carya illinoinensis HOM05D005376 ORTHO05D006481 7.1e-08 60.5 42 73.8
Ca_10737_v3 Cicer arietinum L. HOM05D004749 ORTHO05D005995 7.1e-08 60.5 40 77.5
ClCG05G008230 Citrullus lanatus HOM05D005376 ORTHO05D006481 7.1e-08 60.5 83 48.2
Eucgr.K00283 Eucalyptus grandis HOM05D005376 ORTHO05D006481 7.1e-08 60.5 80 48.8
Glyma.10G232400 Glycine max HOM05D005376 ORTHO05D006481 9.2e-08 60.1 74 48.6
SalBow4G0945 Salvia bowleyana HOM05D005376 ORTHO05D006481 9.2e-08 60.1 74 48.6
ECA232G4406 Erigeron canadensis HOM05D005376 ORTHO05D006481 1.2e-07 59.7 62 56.5
Migut.F00319 Erythranthe guttata HOM05D005376 ORTHO05D006481 1.2e-07 59.7 74 50.0
Glyma.20G161700 Glycine max HOM05D005376 ORTHO05D006481 1.2e-07 59.7 74 48.6
GSVIVG01028894001 Vitis vinifera HOM05D005376 ORTHO05D006481 1.2e-07 59.7 59 55.9
PSO478G1134 Papaver somniferum HOM05D005376 ORTHO05D006481 1.6e-07 59.3 80 45.0
CsaV3_3G017320 Cucumis sativus L. HOM05D005376 ORTHO05D006481 2.1e-07 58.9 85 47.1
PGR142G2432 Punica granatum HOM05D005376 ORTHO05D006481 2.1e-07 58.9 73 49.3
Actinidia34140 Actinidia chinensis HOM05D005376 ORTHO05D006481 2.7e-07 58.5 84 46.4
CDE09G0642 Ceratophyllum demersum HOM05D005376 ORTHO05D006481 2.7e-07 58.5 73 49.3
AUR62031389 Chenopodium quinoa HOM05D005376 ORTHO05D006481 2.7e-07 58.5 81 45.7
MELO3C006928.2 Cucumis melo HOM05D005376 ORTHO05D006481 2.7e-07 58.5 48 68.8
SGA_v2.0_scaffold44G16739 Striga asiatica HOM05D005376 ORTHO05D006481 2.7e-07 58.5 73 50.7
EL10Ac3g05591 Beta vulgaris HOM05D005376 ORTHO05D006481 3.5e-07 58.2 81 45.7
MBI17_g35259_MAGBIO Magnolia biondii HOM05D005376 ORTHO05D006481 3.5e-07 58.2 73 49.3
PSO782G3185 Papaver somniferum HOM05D005376 ORTHO05D006481 3.5e-07 58.2 80 45.0
HPP92_014785 Vanilla planifolia HOM05D005376 ORTHO05D006481 3.5e-07 58.2 77 46.8
Actinidia20875 Actinidia chinensis HOM05D005376 ORTHO05D006481 4.6e-07 57.8 84 46.4
Os11g0580800 Oryza sativa ssp. japonica HOM05D005376 ORTHO05D006481 4.6e-07 57.8 74 48.6
Phvul.007G073200 Phaseolus vulgaris HOM05D005376 ORTHO05D006481 4.6e-07 57.8 73 49.3
VMungo0720G1970 Vigna mungo HOM05D005376 ORTHO05D006481 6.0e-07 57.4 73 49.3
AUR62021148 Chenopodium quinoa HOM05D005376 ORTHO05D006481 7.8e-07 57.0 81 45.7
Nn1g01558 Nelumbo nucifera HOM05D005376 ORTHO05D006481 7.8e-07 57.0 74 48.6
Ah.13g068730 Amaranthus hybridus HOM05D005376 ORTHO05D006481 1.0e-06 56.6 81 44.4
Migut.F01097 Erythranthe guttata HOM05D005376 ORTHO05D006481 1.0e-06 56.6 81 48.1
CiPaw.06G001100 Carya illinoinensis HOM05D005376 ORTHO05D006481 1.3e-06 56.2 63 52.4
Sed0004337 Sechium edule HOM05D005376 ORTHO05D006481 1.3e-06 56.2 63 54.0
ATR0680G109 Amborella trichopoda HOM05D005376 ORTHO05D006481 3.0e-06 55.1 74 47.3
Aqoxy7G00281 Aquilegia oxysepala HOM05D005376 ORTHO05D006481 3.0e-06 55.1 63 52.4
arahy.Tifrunner.gnm1.ann1.20ERFR Arachis hypogaea HOM05D005376 ORTHO05D006481 3.9e-06 54.7 73 49.3
MSTRG.27099 Avicennia marina HOM05D005376 ORTHO05D006481 3.9e-06 54.7 63 50.8
CAN.G236.14 Capsicum annuum HOM05D005376 ORTHO05D006481 3.9e-06 54.7 40 72.5
arahy.Tifrunner.gnm1.ann1.QSSI4A Arachis hypogaea HOM05D005376 ORTHO05D006481 5.1e-06 54.3 78 46.2
MCO14G251 Micromonas commoda HOM05D005376 ORTHO05D006481 5.1e-06 54.3 66 47.0
Nitab4.5_0000084g0270 Nicotiana tabacum HOM05D005376 ORTHO05D006481 5.1e-06 54.3 53 56.6
Nitab4.5_0001625g0010 Nicotiana tabacum HOM05D005376 ORTHO05D006481 5.1e-06 54.3 53 56.6
SEGI_07365 Sequoiadendron giganteum HOM05D005376 ORTHO05D006481 5.1e-06 54.3 62 53.2
Lalb_Chr06g0161271 Lupinus albus HOM05D005376 ORTHO05D006481 6.6e-06 53.9 84 45.2
Manes.06G150900 Manihot esculenta HOM05D005376 ORTHO05D006481 6.6e-06 53.9 81 44.4
Solyc03g025310.3 Solanum lycopersicum HOM05D005376 ORTHO05D006481 6.6e-06 53.9 40 72.5
Sopen03g004140 Solanum pennellii HOM05D005376 ORTHO05D006481 6.6e-06 53.9 40 72.5
PGSC0003DMG400010161 Solanum tuberosum HOM05D005376 ORTHO05D006481 6.6e-06 53.9 40 72.5
Cc02_g02590 Coffea canephora HOM05D005376 ORTHO05D006481 8.6e-06 53.5 63 50.8


User provided reference genes

Program Settings