Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G50770 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 4.5e-135 484.6 243 100.0
CARHR262760 Cardamine hirsuta HOM05D004214 ORTHO05D004963 2.0e-122 442.6 239 92.5
Carub.0007s3642 Capsella rubella HOM05D004214 ORTHO05D004963 1.4e-120 436.4 238 91.2
Thhalv10027904m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 5.8e-114 414.5 232 88.8
Sp7g02430 Schrenkiella parvula HOM05D004214 ORTHO05D004963 5.8e-114 414.5 232 88.8
BraA04t16893Z Brassica rapa HOM05D004214 ORTHO05D004963 4.1e-112 408.3 232 87.9
A04p12290 Brassica napus HOM05D004214 ORTHO05D004963 1.2e-111 406.8 232 87.5
C04p45970 Brassica napus HOM05D004214 ORTHO05D004963 2.7e-111 405.6 232 87.5
BolC4t26180H Brassica oleracea HOM05D004214 ORTHO05D004963 2.7e-111 405.6 232 87.5
BcaB06g27341 Brassica carinata HOM05D004214 ORTHO05D004963 3.9e-110 401.7 232 86.2
AT5G39530 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 4.3e-109 398.3 208 94.2
Sp7g02440 Schrenkiella parvula HOM05D004214 ORTHO05D004963 1.1e-101 373.6 235 80.0
BcaB06g27320 Brassica carinata HOM05D004214 ORTHO05D004963 4.6e-95 351.7 233 76.0
A04p12280 Brassica napus HOM05D004214 ORTHO05D004963 1.0e-94 350.5 233 75.5
C04p45960 Brassica napus HOM05D004214 ORTHO05D004963 3.0e-94 349.0 233 75.1
BolC4t26179H Brassica oleracea HOM05D004214 ORTHO05D004963 3.0e-94 349.0 233 75.1
BraA04t16892Z Brassica rapa HOM05D004214 ORTHO05D004963 3.0e-94 349.0 233 75.1
CARHR262800 Cardamine hirsuta HOM05D004214 ORTHO05D004963 1.9e-93 346.3 180 93.9
Thhalv10028063m.g Eutrema salsugineum HOM05D004214 ORTHO05D004963 3.3e-93 345.5 233 75.5
BcaB06g27340 Brassica carinata HOM05D004214 ORTHO05D004963 2.1e-92 342.8 228 74.6
A04p12270 Brassica napus HOM05D004214 ORTHO05D004963 6.2e-92 341.3 233 72.5
BraA04t16891Z Brassica rapa HOM05D004214 ORTHO05D004963 1.1e-91 340.5 233 72.1
THA.LOC104805483 Tarenaya hassleriana HOM05D004214 ORTHO05D004963 3.1e-91 339.0 246 72.0
CARHR262810 Cardamine hirsuta HOM05D004214 ORTHO05D004963 5.3e-91 338.2 230 74.3
AL7G50790 Arabidopsis lyrata HOM05D004214 ORTHO05D004963 2.0e-90 336.3 233 73.0
AT5G39520 Arabidopsis thaliana HOM05D004214 ORTHO05D004963 3.4e-90 335.5 205 79.0
Carub.0007s3643 Capsella rubella HOM05D004214 ORTHO05D004963 4.9e-89 331.6 233 73.4
Manes.02G048700 Manihot esculenta HOM05D004214 ORTHO05D004963 5.3e-83 311.6 208 73.6
TWI60G1366 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 2.5e-80 302.8 195 73.3
Dinv11505 Davidia involucrata HOM05D004214 ORTHO05D004963 3.0e-78 295.8 204 70.1
Ciclev10012515m.g Citrus clementina HOM05D004214 ORTHO05D004963 3.9e-78 295.4 216 67.1
GSVIVG01011460001 Vitis vinifera HOM05D004214 ORTHO05D004963 5.1e-78 295.0 219 64.8
Atru.chr8.322 Acer truncatum HOM05D004214 ORTHO05D004963 1.1e-77 293.9 199 71.9
CSS0015906 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.5e-77 293.5 200 70.0
CSS0019671 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 1.5e-77 293.5 200 70.0
Actinidia06102 Actinidia chinensis HOM05D004214 ORTHO05D004963 1.9e-77 293.1 218 64.7
Potri.017G087500 Populus trichocarpa HOM05D004214 ORTHO05D004963 1.9e-77 293.1 200 71.0
Cpa.g.sc14.113 Carica papaya HOM05D004214 ORTHO05D004963 7.4e-77 291.2 195 71.3
Duzib147G0992 Durio zibethinus HOM05D004214 ORTHO05D004963 6.2e-76 288.1 195 70.3
Sc10g0003430 Simmondsia chinensis HOM05D004214 ORTHO05D004963 5.3e-75 285.0 217 66.4
Eucgr.I02016 Eucalyptus grandis HOM05D004214 ORTHO05D004963 9.0e-75 284.3 191 69.1
TWI34G0797 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 9.0e-75 284.3 201 69.7
TWI34G1333 Tripterygium wilfordii HOM05D004214 ORTHO05D004963 9.0e-75 284.3 201 69.7
Migut.H00677 Erythranthe guttata HOM05D004214 ORTHO05D004963 3.4e-74 282.3 200 66.5
MSTRG.23916 Avicennia marina HOM05D004214 ORTHO05D004963 1.0e-73 280.8 239 59.0
TAR629G3302 Trochodendron aralioides HOM05D004214 ORTHO05D004963 2.2e-73 279.6 206 66.0
Oeu010226.1 Olea europaea HOM05D004214 ORTHO05D004963 8.4e-73 277.7 209 65.1
Oeu010227.1 Olea europaea HOM05D004214 ORTHO05D004963 8.4e-73 277.7 209 65.1
Hma1.2p1_0409F.1_g146710 Hydrangea macrophylla HOM05D004214 ORTHO05D004963 1.1e-72 277.3 210 63.3
Thecc.04G087300 Theobroma cacao HOM05D004214 ORTHO05D004963 1.4e-72 276.9 200 65.5
EL10Ac2g03019 Beta vulgaris HOM05D004214 ORTHO05D004963 2.5e-72 276.2 207 62.3
Lsat_1_v5_gn_4_169740 Lactuca sativa HOM05D004214 ORTHO05D004963 7.1e-72 274.6 204 64.7
HanXRQChr15g0487741 Helianthus annuus HOM05D004214 ORTHO05D004963 9.3e-72 274.2 202 64.9
CSS0036969 Camellia sinensis var. sinensis HOM05D004214 ORTHO05D004963 2.1e-71 273.1 194 68.6
Cc07_g03630 Coffea canephora HOM05D004214 ORTHO05D004963 2.1e-71 273.1 195 65.1
SalBow1G5883 Salvia bowleyana HOM05D004214 ORTHO05D004963 2.7e-71 272.7 232 58.2
ECA232G2753 Erigeron canadensis HOM05D004214 ORTHO05D005214 7.9e-71 271.2 200 66.0
Gorai.001G240700 Gossypium raimondii HOM05D004214 ORTHO05D004963 1.0e-70 270.8 191 66.0
BcaB06g27319 Brassica carinata HOM05D004214 ORTHO05D004963 2.3e-70 269.6 233 61.4
Solyc02g067120.4 Solanum lycopersicum HOM05D004214 ORTHO05D004963 8.7e-70 267.7 200 63.5
PGSC0003DMG400025136 Solanum tuberosum HOM05D004214 ORTHO05D004963 1.1e-69 267.3 200 63.0
Sopen02g016310 Solanum pennellii HOM05D004214 ORTHO05D004963 1.5e-69 266.9 241 56.0
COL.COLO4_12225 Corchorus olitorius HOM05D004214 ORTHO05D004963 1.3e-68 263.8 186 68.3
unitig_62.g23442 Utricularia gibba HOM05D004214 ORTHO05D004963 1.6e-68 263.5 238 56.7
Rhsim10G0035800 Rhododendron simsii HOM05D004214 ORTHO05D004963 1.1e-67 260.8 198 63.6
AUR62018111 Chenopodium quinoa HOM05D004214 ORTHO05D004963 5.3e-67 258.5 207 58.9
Rhsim10G0035900 Rhododendron simsii HOM05D004214 ORTHO05D004963 5.9e-66 255.0 220 56.8
DCAR_011079 Daucus carota HOM05D004214 ORTHO05D004963 1.0e-65 254.2 194 63.9
Lj3A346G23 Lonicera japonica HOM05D004214 ORTHO05D004963 1.7e-65 253.4 199 59.8
Nitab4.5_0010283g0010 Nicotiana tabacum HOM05D004214 ORTHO05D004963 5.0e-65 251.9 199 60.8
Hund15587 Selenicereus undatus HOM05D004214 ORTHO05D004963 1.1e-64 250.8 239 54.0
ATR0564G445 Amborella trichopoda HOM05D004214 ORTHO05D004963 8.8e-62 241.1 217 54.8
CAN.G979.5 Capsicum annuum HOM05D004214 ORTHO05D004963 1.8e-59 233.4 163 65.6
PSO478G0939 Papaver somniferum HOM05D004214 ORTHO05D004963 2.4e-59 233.0 200 56.0
QL02p084825 Quercus lobata HOM05D004214 ORTHO05D004963 4.1e-59 232.3 198 55.6
PSO017G4463 Papaver somniferum HOM05D004214 ORTHO05D004963 1.2e-58 230.7 200 55.5
AUR62034445 Chenopodium quinoa HOM05D004214 ORTHO05D004963 7.7e-58 228.0 169 62.1
C04p45950 Brassica napus HOM05D004214 ORTHO05D004963 3.8e-57 225.7 233 53.2
CDE02G0918 Ceratophyllum demersum HOM05D004214 ORTHO05D004963 1.6e-55 220.3 215 49.3
SGA_v2.0_scaffold413G51175 Striga asiatica HOM05D004214 ORTHO05D004963 1.6e-55 220.3 212 54.7
Gohir.D07G212700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 2.7e-55 219.5 157 64.3
SEGI_32476 Sequoiadendron giganteum HOM05D004214 ORTHO05D004963 2.7e-55 219.5 235 45.1
Peaxi162Scf00629g00121 Petunia axillaris HOM05D004214 ORTHO05D004963 5.1e-54 215.3 202 54.5
QL02p084872 Quercus lobata HOM05D004214 ORTHO05D004963 6.7e-54 214.9 193 53.4
Nn4g23269 Nelumbo nucifera HOM05D004214 ORTHO05D004963 2.6e-53 213.0 145 65.5
PGSC0003DMG402001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 5.3e-51 205.3 205 49.3
Nitab4.5_0000568g0170 Nicotiana tabacum HOM05D004214 ORTHO05D004963 1.2e-50 204.1 192 49.5
CAN.G206.176 Capsicum annuum HOM05D004214 ORTHO05D004963 1.5e-50 203.8 208 48.1
Lj8A426T27 Lonicera japonica HOM05D004214 ORTHO05D004963 2.6e-50 203.0 152 61.8
Lj3A369T15 Lonicera japonica HOM05D004214 ORTHO05D004963 3.5e-50 202.6 152 61.8
PGSC0003DMG401001341 Solanum tuberosum HOM05D004214 ORTHO05D004963 4.5e-50 202.2 193 51.3
Lj8A428G27 Lonicera japonica HOM05D004214 ORTHO05D004963 1.3e-49 200.7 151 61.6
Solyc02g088270.3 Solanum lycopersicum HOM05D004214 ORTHO05D004963 1.7e-49 200.3 192 50.5
Sopen02g032950 Solanum pennellii HOM05D004214 ORTHO05D004963 1.7e-49 200.3 192 51.6
Ca_04853_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 2.2e-49 199.9 202 46.0
Nitab4.5_0000212g0090 Nicotiana tabacum HOM05D004214 ORTHO05D004963 2.9e-49 199.5 199 51.3
PGR004G0346 Punica granatum HOM05D004214 ORTHO05D004963 8.5e-49 198.0 141 64.5
Lj3A367T10 Lonicera japonica HOM05D004214 ORTHO05D004963 7.2e-48 194.9 151 60.9
Lj4P113T24 Lonicera japonica HOM05D004214 ORTHO05D004963 1.6e-47 193.7 145 62.8
Lj2g0002943 Lotus japonicus HOM05D004214 ORTHO05D004963 1.6e-47 193.7 204 44.1
arahy.Tifrunner.gnm1.ann1.55PBKN Arachis hypogaea HOM05D004214 ORTHO05D004963 2.7e-47 193.0 201 43.8
TPR.G14395 Trifolium pratense HOM05D004214 ORTHO05D004963 6.1e-47 191.8 200 44.5
arahy.Tifrunner.gnm1.ann1.7SZ544 Arachis hypogaea HOM05D004214 ORTHO05D004963 1.4e-46 190.7 201 43.3
Lj3A352G14 Lonicera japonica HOM05D004214 ORTHO05D004963 1.5e-45 187.2 145 60.0
Lj2g0016815 Lotus japonicus HOM05D004214 ORTHO05D004963 1.5e-45 187.2 198 43.4
Lalb_Chr06g0175181 Lupinus albus HOM05D004214 ORTHO05D004963 5.7e-45 185.3 222 40.5
Glyma.13G060852 Glycine max HOM05D004214 ORTHO05D004963 1.7e-44 183.7 206 41.7
Medtr6g012830 Medicago truncatula HOM05D004214 ORTHO05D004963 2.8e-44 183.0 219 40.6
TPR.G26214 Trifolium pratense HOM05D004214 ORTHO05D004963 6.3e-44 181.8 197 43.1
Prupe.3G263500 Prunus persica HOM05D004214 ORTHO05D004963 1.8e-43 180.3 199 46.2
QL02p084854 Quercus lobata HOM05D004214 ORTHO05D004963 1.8e-43 180.3 194 49.0
Os03g0168300 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 9.1e-43 177.9 208 42.8
Psat1g070480 Pisum sativum HOM05D004214 ORTHO05D004963 1.2e-42 177.6 171 47.4
VMungo0464G0566 Vigna mungo HOM05D004214 ORTHO05D004963 3.5e-42 176.0 214 42.5
FAN05G5298 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.5e-42 175.6 193 45.6
Phvul.004G031400 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 5.9e-42 175.3 199 41.2
Peaxi162Scf00166g01050 Petunia axillaris HOM05D004214 ORTHO05D004963 2.2e-41 173.3 191 44.5
Zm00001eb402430 Zea mays HOM05D004214 ORTHO05D004963 6.5e-41 171.8 195 42.1
MD09G1055000 Malus domestica HOM05D004214 ORTHO05D004963 1.5e-40 170.6 208 39.4
Glyma.19G025600 Glycine max HOM05D004214 ORTHO05D004963 2.5e-40 169.9 206 39.3
BolC4t26178H Brassica oleracea HOM05D004214 ORTHO05D004963 2.7e-39 166.4 121 68.6
PGR083G1063 Punica granatum HOM05D004214 ORTHO05D004963 8.0e-39 164.9 195 43.1
ClCG09G017980 Citrullus lanatus HOM05D004214 ORTHO05D004963 1.0e-38 164.5 185 43.8
FvH4_6g48000 Fragaria vesca HOM05D004214 ORTHO05D004963 5.2e-38 162.2 193 43.0
FAN14G4990 Fragaria x ananassa HOM05D004214 ORTHO05D004963 8.8e-38 161.4 210 41.0
Mapoly0033s0115 Marchantia polymorpha HOM05D004214 ORTHO05D004963 1.2e-37 161.0 211 37.0
CsaV3_5G038250 Cucumis sativus L. HOM05D004214 ORTHO05D004963 2.0e-37 160.2 190 41.6
FvH4_6g48001 Fragaria vesca HOM05D004214 ORTHO05D004963 9.7e-37 157.9 215 40.0
Zm00001eb328430 Zea mays HOM05D004214 ORTHO05D004963 9.7e-37 157.9 182 46.2
RcHm_v2.0_Chr2g0167291 Rosa chinensis HOM05D004214 ORTHO05D004963 1.3e-36 157.5 201 41.3
RcHm_v2.0_Chr2g0167251 Rosa chinensis HOM05D004214 ORTHO05D004963 2.2e-36 156.8 167 44.9
Lj2g0001860 Lotus japonicus HOM05D004214 ORTHO05D004963 3.7e-36 156.0 145 46.9
Os07g0633000 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 2.4e-35 153.3 170 48.8
Psat1g071840 Pisum sativum HOM05D004214 ORTHO05D004963 2.4e-35 153.3 196 38.3
FAN14G3700 Fragaria x ananassa HOM05D004214 ORTHO05D004963 4.1e-35 152.5 214 39.3
Gohir.A07G206700 Gossypium hirsutum HOM05D004214 ORTHO05D004963 4.1e-35 152.5 98 71.4
Lj2g0019349 Lotus japonicus HOM05D004214 ORTHO05D004963 5.3e-35 152.1 181 37.6
MELO3C033594.2 Cucumis melo HOM05D004214 ORTHO05D004963 9.1e-35 151.4 185 42.2
FAN09G1794 Fragaria x ananassa HOM05D004214 ORTHO05D004963 9.1e-35 151.4 219 36.5
RcHm_v2.0_Chr2g0167241 Rosa chinensis HOM05D004214 ORTHO05D004963 1.6e-34 150.6 198 40.9
TPR.G8805 Trifolium pratense HOM05D004214 ORTHO05D004963 2.9e-33 146.4 197 37.6
Ca_04848_v3 Cicer arietinum L. HOM05D004214 ORTHO05D004963 6.5e-33 145.2 196 37.2
Phvul.004G029700 Phaseolus vulgaris HOM05D004214 ORTHO05D004963 9.4e-32 141.4 202 35.1
ClCG10G015310 Citrullus lanatus HOM05D004214 ORTHO05D004963 3.4e-29 132.9 200 36.5
FAN02G2928 Fragaria x ananassa HOM05D004214 ORTHO05D004963 3.4e-29 132.9 208 37.5
CBR_g51334 Chara braunii HOM05D004214 ORTHO05D004963 1.1e-27 127.9 173 40.5
arahy.Tifrunner.gnm1.ann1.SU00NT Arachis hypogaea HOM05D004214 ORTHO05D004963 1.2e-26 124.4 191 34.6
C06p18570 Brassica napus HOM05D004214 ORTHO05D004963 1.2e-26 124.4 88 75.0
Gohir.D11G074550 Gossypium hirsutum HOM05D004214 ORTHO05D004963 2.7e-26 123.2 103 58.3
Gorai.007G080000 Gossypium raimondii HOM05D004214 ORTHO05D004963 2.7e-26 123.2 107 56.1
Nitab4.5_0001591g0160 Nicotiana tabacum HOM05D004214 ORTHO05D004963 5.9e-26 122.1 191 33.5
Aa31LG9G16510 Aethionema arabicum HOM05D004214 ORTHO05D004963 2.3e-25 120.2 88 71.6
BolC9t55376H Brassica oleracea HOM05D004214 ORTHO05D004963 2.8e-23 113.2 85 65.9
MD09G1055400 Malus domestica HOM05D004214 ORTHO05D004963 5.2e-22 109.0 115 45.2
BraA07t29702Z Brassica rapa HOM05D004214 ORTHO05D004963 2.2e-20 103.6 74 75.7
Glyma.13G061800 Glycine max HOM05D004214 ORTHO05D004963 2.8e-20 103.2 111 41.4
CsaV3_3G041190 Cucumis sativus L. HOM05D004214 ORTHO05D004963 5.0e-17 92.4 198 29.3
PRCOL_00004285 Prasinoderma coloniale HOM05D004214 ORTHO05D004963 7.3e-16 88.6 175 28.6
BolC6t37070H Brassica oleracea HOM05D004214 ORTHO05D004963 2.8e-15 86.7 66 69.7
Lj3A364T22 Lonicera japonica HOM05D004214 ORTHO05D004963 4.7e-15 85.9 74 54.1
MELO3C009848.2 Cucumis melo HOM05D004214 ORTHO05D004963 2.3e-14 83.6 168 31.0
Lj3A350G16 Lonicera japonica HOM05D004214 ORTHO05D004963 4.0e-14 82.8 235 30.2
Sabra17G0077200 Salix brachista HOM05D004214 ORTHO05D004963 2.0e-10 70.5 51 64.7
CBR_g46605 Chara braunii HOM05D004214 ORTHO05D004963 8.6e-09 65.1 121 32.2
Pp3c1_32760 Physcomitrium patens HOM05D019249 ORTHO05D019657 4.3e-08 62.8 209 23.9
AagrBONN_evm.TU.Sc2ySwM_362.234 Anthoceros agrestis HOM05D019249 ORTHO05D019657 2.8e-07 60.1 168 24.4
Os10g0580600 Oryza sativa ssp. japonica HOM05D004214 ORTHO05D004963 8.0e-07 58.5 43 60.5


User provided reference genes

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