Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G49850 Arabidopsis lyrata HOM05D007469 ORTHO05D003360 8.5e-126 454.1 314 100.0
AT5G40160 Arabidopsis thaliana HOM05D007469 ORTHO05D003360 5.0e-110 401.7 316 90.8
Carub.0007s3552 Capsella rubella HOM05D007469 ORTHO05D003360 6.8e-107 391.3 316 91.5
CARHR261930 Cardamine hirsuta HOM05D007469 ORTHO05D003360 1.5e-90 337.0 316 81.0
BcaB06g27455 Brassica carinata HOM05D007469 ORTHO05D003360 7.8e-87 324.7 318 78.9
BraA04t16968Z Brassica rapa HOM05D007469 ORTHO05D003360 7.8e-87 324.7 321 80.1
Thhalv10027842m.g Eutrema salsugineum HOM05D007469 ORTHO05D003360 2.3e-86 323.2 304 80.3
C04p46840 Brassica napus HOM05D007469 ORTHO05D003360 1.1e-80 304.3 320 77.5
BolC4t26272H Brassica oleracea HOM05D007469 ORTHO05D003360 1.1e-80 304.3 320 77.5
A04p13090 Brassica napus HOM05D007469 ORTHO05D003360 1.4e-80 303.9 321 75.7
Sp7g01840 Schrenkiella parvula HOM05D007469 ORTHO05D003360 2.3e-78 296.6 321 76.6
Aa31LG9G1510 Aethionema arabicum HOM05D007469 ORTHO05D003360 2.0e-74 283.5 330 60.6
THA.LOC104805414 Tarenaya hassleriana HOM05D007469 ORTHO05D003360 5.1e-62 242.3 321 66.4
Ciclev10013529m.g Citrus clementina HOM05D007469 ORTHO05D003360 9.3e-48 194.9 300 65.0
Atru.chr8.2427 Acer truncatum HOM05D007469 ORTHO05D003360 5.3e-43 179.1 271 66.8
Manes.15G180348 Manihot esculenta HOM05D007469 ORTHO05D003360 1.2e-42 177.9 244 68.9
Thecc.04G004300 Theobroma cacao HOM05D007469 ORTHO05D003360 1.7e-41 174.1 249 67.5
TWI56G0985 Tripterygium wilfordii HOM05D005889 ORTHO05D007495 3.8e-41 172.9 302 59.6
Lj7C409T15 Lonicera japonica HOM05D007469 ORTHO05D003360 1.4e-40 171.0 254 61.0
arahy.Tifrunner.gnm1.ann1.5026CX Arachis hypogaea HOM05D007469 ORTHO05D003360 1.9e-40 170.6 251 65.7
arahy.Tifrunner.gnm1.ann1.RR2C2G Arachis hypogaea HOM05D007469 ORTHO05D003360 2.7e-39 166.8 258 64.0
Oeu047333.1 Olea europaea HOM05D007469 ORTHO05D003360 2.3e-38 163.7 257 64.2
Sabra16G0184600 Salix brachista HOM05D007469 ORTHO05D003360 3.9e-38 162.9 309 55.0
Aqoxy3G00905 Aquilegia oxysepala HOM05D007469 ORTHO05D003360 1.1e-37 161.4 252 63.1
Dinv35031 Davidia involucrata HOM05D000028 ORTHO05D000390 1.1e-37 161.4 152 60.5
MELO3C021518.2 Cucumis melo HOM05D007469 ORTHO05D003360 1.6e-36 157.5 274 59.9
CiPaw.03G035300 Carya illinoinensis HOM05D007469 ORTHO05D003360 1.1e-35 154.8 257 63.0
Duzib264G1016 Durio zibethinus HOM05D007469 ORTHO05D003360 1.1e-35 154.8 283 62.9
Potri.001G295200 Populus trichocarpa HOM05D007469 ORTHO05D003360 4.1e-35 152.9 285 61.8
Gohir.A07G218400 Gossypium hirsutum HOM05D007469 ORTHO05D003360 6.9e-35 152.1 297 58.6
Sc18g0006210 Simmondsia chinensis HOM05D007469 ORTHO05D003360 4.5e-34 149.4 311 37.9
Hma1.2p1_0697F.1_g204960 Hydrangea macrophylla HOM05D007469 ORTHO05D003360 5.9e-34 149.1 224 67.0
Gorai.001G259900 Gossypium raimondii HOM05D007469 ORTHO05D003360 7.6e-34 148.7 297 58.2
CsaV3_5G037380 Cucumis sativus L. HOM05D007469 ORTHO05D003360 1.3e-33 147.9 265 61.1
Gohir.D07G225500 Gossypium hirsutum HOM05D007469 ORTHO05D003360 5.0e-33 146.0 294 58.8
Peaxi162Scf00290g00012 Petunia axillaris HOM05D007469 ORTHO05D003360 1.4e-32 144.4 255 63.9
Cc02_g31090 Coffea canephora HOM05D007469 ORTHO05D003360 1.9e-32 144.1 255 64.3
TPR.G666 Trifolium pratense HOM05D007469 ORTHO05D003360 5.5e-32 142.5 263 60.8
GSVIVG01032525001 Vitis vinifera HOM05D007469 ORTHO05D003360 1.6e-31 141.0 223 67.7
Haze_14632 Corylus avellana HOM05D007469 ORTHO05D003360 1.3e-30 137.9 268 60.4
CDE10G0535 Ceratophyllum demersum HOM05D007469 ORTHO05D003360 2.3e-30 137.1 262 59.2
Eucgr.J02176 Eucalyptus grandis HOM05D007469 ORTHO05D003360 2.3e-30 137.1 213 49.8
MSTRG.15502 Avicennia marina HOM05D007469 ORTHO05D003360 5.1e-30 136.0 262 58.4
EL10Ac8g18402 Beta vulgaris HOM05D007469 ORTHO05D003360 5.1e-30 136.0 157 51.6
Dinv33523 Davidia involucrata HOM05D007469 ORTHO05D003360 8.7e-30 135.2 253 60.1
Rhsim10G0026300 Rhododendron simsii HOM05D007469 ORTHO05D003360 8.7e-30 135.2 314 55.4
unitig_0.g2798 Utricularia gibba HOM05D007469 ORTHO05D003360 1.5e-29 134.4 317 53.6
Hund20037 Selenicereus undatus HOM05D007469 ORTHO05D009499 1.9e-29 134.0 144 54.2
CANSAT64G0136 Cannabis sativa HOM05D007469 ORTHO05D003360 4.3e-29 132.9 271 59.0
CANSAT64G2834 Cannabis sativa HOM05D007469 ORTHO05D003360 4.3e-29 132.9 271 59.0
TAR371G0800 Trochodendron aralioides HOM05D007469 ORTHO05D003360 5.7e-29 132.5 301 56.1
QL02p077481 Quercus lobata HOM05D007469 ORTHO05D003360 2.8e-28 130.2 291 56.4
DCAR_013974 Daucus carota HOM05D007469 ORTHO05D003360 4.8e-28 129.4 250 62.8
ATR1159G025 Amborella trichopoda HOM05D007469 ORTHO05D003360 2.4e-27 127.1 273 57.1
Cfa007462 Carpinus fangiana HOM05D007469 ORTHO05D003360 2.4e-27 127.1 268 58.6
Psat0s5166g0040 Pisum sativum HOM05D007469 ORTHO05D003360 4.1e-27 126.3 247 59.1
Sed0015996 Sechium edule HOM05D007469 ORTHO05D003360 6.9e-27 125.6 271 57.9
Actinidia06038 Actinidia chinensis HOM05D007469 ORTHO05D003360 9.0e-27 125.2 240 62.5
Nn4g22877 Nelumbo nucifera HOM05D007469 ORTHO05D003360 9.0e-27 125.2 304 54.6
Prupe.3G132600 Prunus persica HOM05D007469 ORTHO05D003360 1.2e-26 124.8 256 57.8
COL.COLO4_32001 Corchorus olitorius HOM05D005889 ORTHO05D007495 3.4e-26 123.2 85 75.3
RcHm_v2.0_Chr7g0226491 Rosa chinensis HOM05D007469 ORTHO05D003360 1.0e-25 121.7 280 55.4
SGA_v2.0_scaffold30G12492 Striga asiatica HOM05D007469 ORTHO05D003360 1.3e-25 121.3 150 49.3
HanXRQChr15g0488381 Helianthus annuus HOM05D007469 ORTHO05D003360 1.7e-25 120.9 121 58.7
SalBow7G0002 Salvia bowleyana HOM05D007469 ORTHO05D003360 5.0e-25 119.4 138 53.6
ClCG00G005290 Citrullus lanatus HOM05D007469 ORTHO05D003360 6.5e-25 119.0 159 50.9
ClCG09G018690 Citrullus lanatus HOM05D007469 ORTHO05D003360 6.5e-25 119.0 159 50.9
ClCG09G018760 Citrullus lanatus HOM05D007469 ORTHO05D003360 6.5e-25 119.0 159 50.9
FvH4_5g31250 Fragaria vesca HOM05D007469 ORTHO05D003360 6.5e-25 119.0 279 55.6
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 8.5e-25 118.6 200 45.5
PGR083G2689 Punica granatum HOM05D007469 ORTHO05D003360 8.5e-25 118.6 184 45.7
Lalb_Chr08g0233251 Lupinus albus HOM05D007469 ORTHO05D003360 1.4e-24 117.9 288 54.5
Actinidia36064 Actinidia chinensis HOM05D007469 ORTHO05D003360 1.9e-24 117.5 201 69.2
Medtr2g048680 Medicago truncatula HOM05D007469 ORTHO05D003360 4.2e-24 116.3 163 44.8
CSS0038198 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 5.5e-24 115.9 279 56.3
CAN.G824.9 Capsicum annuum HOM05D007469 ORTHO05D003360 9.4e-24 115.2 258 58.9
Ah.10g030590 Amaranthus hybridus HOM05D007469 ORTHO05D003360 1.2e-23 114.8 141 48.2
AUR62021431 Chenopodium quinoa HOM05D007469 ORTHO05D003360 1.4e-22 111.3 149 53.7
Rhsim10G0026800 Rhododendron simsii HOM05D007469 ORTHO05D003360 3.0e-22 110.2 193 46.6
Glyma.11G211316 Glycine max HOM05D007469 ORTHO05D003360 3.9e-22 109.8 284 53.2
Nitab4.5_0004567g0040 Nicotiana tabacum HOM05D007469 ORTHO05D003360 5.1e-22 109.4 279 54.5
Migut.K01363 Erythranthe guttata HOM05D007469 ORTHO05D003360 8.8e-22 108.6 210 61.4
Nitab4.5_0001969g0030 Nicotiana tabacum HOM05D007469 ORTHO05D003360 2.0e-21 107.5 285 54.4
Ca_02547_v3 Cicer arietinum L. HOM05D007469 ORTHO05D003360 2.6e-21 107.1 296 49.7
Lsat_1_v5_gn_4_181880 Lactuca sativa HOM05D007469 ORTHO05D003360 2.6e-21 107.1 122 54.1
VMungo0540G0432 Vigna mungo HOM05D007469 ORTHO05D003360 5.7e-21 105.9 118 54.2
Glyma.18G044300 Glycine max HOM05D007469 ORTHO05D003360 7.4e-21 105.5 246 56.5
Lj1g0016351 Lotus japonicus HOM05D007469 ORTHO05D003360 1.7e-20 104.4 305 52.1
CSS0050487 Camellia sinensis var. sinensis HOM05D007469 ORTHO05D003360 4.8e-20 102.8 113 56.6
MBI14_g12788_MAGBIO Magnolia biondii HOM05D007469 ORTHO05D003360 4.8e-20 102.8 247 57.9
Cpa.g.sc88.45 Carica papaya HOM05D007469 ORTHO05D003360 6.3e-20 102.4 190 67.9
Phvul.006G086600 Phaseolus vulgaris HOM05D007469 ORTHO05D003360 6.3e-20 102.4 118 53.4
HPP92_010841 Vanilla planifolia HOM05D007469 ORTHO05D003360 5.3e-19 99.4 132 47.0
Solyc09g009290.3 Solanum lycopersicum HOM05D007469 ORTHO05D003360 1.5e-18 97.8 137 52.6
Sopen09g004030 Solanum pennellii HOM05D007469 ORTHO05D003360 1.3e-17 94.7 137 51.8
ECA232G1734 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.9e-17 93.6 123 48.8
SEGI_15817 Sequoiadendron giganteum HOM05D005999 ORTHO05D003360 3.8e-17 93.2 132 40.9
Zm00001eb208780 Zea mays HOM05D007469 ORTHO05D003360 6.5e-17 92.4 253 51.4
MD05G1026500 Malus domestica HOM05D007469 ORTHO05D003360 7.9e-15 85.5 165 44.2
PSO161G0131 Papaver somniferum HOM05D007469 ORTHO05D003360 8.8e-14 82.0 153 39.2
CARHR281700 Cardamine hirsuta HOM05D005999 ORTHO05D003360 6.3e-12 75.9 85 47.1
BcaB04g20127 Brassica carinata HOM05D005999 ORTHO05D003360 8.2e-12 75.5 105 42.9
Lalb_Chr16g0377331 Lupinus albus HOM05D005999 ORTHO05D003360 8.2e-12 75.5 114 39.5
AL8G45550 Arabidopsis lyrata HOM05D005999 ORTHO05D003360 1.4e-11 74.7 104 41.3
Lalb_Chr05g0212151 Lupinus albus HOM05D005999 ORTHO05D003360 1.4e-11 74.7 100 44.0
Aa31LG9G1330 Aethionema arabicum HOM05D005999 ORTHO05D003360 1.8e-11 74.3 105 41.9
PGSC0003DMG400002708 Solanum tuberosum HOM05D007469 ORTHO05D003360 1.8e-11 74.3 136 46.3
BcaC04g23109 Brassica carinata HOM05D005999 ORTHO05D003360 5.3e-11 72.8 105 41.9
BolC9t54096H Brassica oleracea HOM05D005999 ORTHO05D003360 5.3e-11 72.8 105 41.9
Lj2g0014093 Lotus japonicus HOM05D005999 ORTHO05D003360 5.3e-11 72.8 117 38.5
CANSAT01G1435 Cannabis sativa HOM05D005999 ORTHO05D003360 7.0e-11 72.4 80 45.0
MBI05_g32278_MAGBIO Magnolia biondii HOM05D005999 ORTHO05D003360 7.0e-11 72.4 79 44.3
C09p12060 Brassica napus HOM05D005999 ORTHO05D003360 9.1e-11 72.0 104 41.3
Zm00001eb170850 Zea mays HOM05D005999 ORTHO05D003360 9.1e-11 72.0 99 39.4
CANSAT54G2046 Cannabis sativa HOM05D005999 ORTHO05D003360 1.2e-10 71.6 87 43.7
Thhalv10004296m.g Eutrema salsugineum HOM05D005999 ORTHO05D003360 1.2e-10 71.6 104 41.3
A09p10170 Brassica napus HOM05D005999 ORTHO05D003360 1.6e-10 71.2 104 40.4
BraA09t36663Z Brassica rapa HOM05D005999 ORTHO05D003360 1.6e-10 71.2 104 40.4
Duzib147G0884 Durio zibethinus HOM05D005999 ORTHO05D003360 1.6e-10 71.2 85 44.7
Sp2g30630 Schrenkiella parvula HOM05D005999 ORTHO05D003360 1.6e-10 71.2 104 41.3
Sopen02g012860 Solanum pennellii HOM05D005999 ORTHO05D003360 1.6e-10 71.2 100 41.0
Carub.0008s2845 Capsella rubella HOM05D005999 ORTHO05D003360 2.0e-10 70.9 105 39.0
ECA080G0002 Erigeron canadensis HOM05D000340 ORTHO05D000821 2.0e-10 70.9 40 82.5
Thecc.01G010800 Theobroma cacao HOM05D005999 ORTHO05D003360 2.0e-10 70.9 103 39.8
PGSC0003DMG400008679 Solanum tuberosum HOM05D005999 ORTHO05D003360 3.5e-10 70.1 106 39.6
Gohir.D03G005000 Gossypium hirsutum HOM05D005999 ORTHO05D003360 4.5e-10 69.7 98 41.8
Gorai.003G005300 Gossypium raimondii HOM05D005999 ORTHO05D003360 4.5e-10 69.7 98 41.8
Nitab4.5_0000188g0250 Nicotiana tabacum HOM05D005999 ORTHO05D003360 4.5e-10 69.7 98 41.8
Solyc02g061820.4 Solanum lycopersicum HOM05D005999 ORTHO05D003360 4.5e-10 69.7 98 40.8
AT5G66055 Arabidopsis thaliana HOM05D005999 ORTHO05D003360 5.9e-10 69.3 104 38.5
ECA232G4368 Erigeron canadensis HOM05D005999 ORTHO05D003360 5.9e-10 69.3 97 38.1
Manes.01G151300 Manihot esculenta HOM05D005999 ORTHO05D003360 7.7e-10 68.9 97 43.3
Nitab4.5_0005409g0010 Nicotiana tabacum HOM05D005999 ORTHO05D003360 7.7e-10 68.9 98 41.8
Sc16g0001790 Simmondsia chinensis HOM05D005999 ORTHO05D003360 7.7e-10 68.9 88 40.9
Zm00001eb211570 Zea mays HOM05D005999 ORTHO05D003360 7.7e-10 68.9 96 38.5
Zm00001eb242830 Zea mays HOM05D005999 ORTHO05D003360 7.7e-10 68.9 96 38.5
Ciclev10025620m.g Citrus clementina HOM05D005999 ORTHO05D003360 1.0e-09 68.6 76 46.1
Oeu020651.1 Olea europaea HOM05D005999 ORTHO05D003360 1.0e-09 68.6 82 40.2
PSO170G6629 Papaver somniferum HOM05D005999 ORTHO05D003360 1.0e-09 68.6 85 44.7
vmacro05796 Vaccinium macrocarpon HOM05D007469 ORTHO05D003360 1.3e-09 68.2 159 67.3
CsaV3_6G047550 Cucumis sativus L. HOM05D005999 ORTHO05D003360 1.7e-09 67.8 85 43.5
Migut.L00736 Erythranthe guttata HOM05D005999 ORTHO05D003360 1.7e-09 67.8 81 43.2
COL.COLO4_22501 Corchorus olitorius HOM05D005999 ORTHO05D003360 3.8e-09 66.6 102 38.2
CANSAT25G3254 Cannabis sativa HOM05D005999 ORTHO05D003360 8.5e-09 65.5 93 41.9
GSVIVG01005198001 Vitis vinifera HOM05D005999 ORTHO05D003360 8.5e-09 65.5 73 46.6
arahy.Tifrunner.gnm1.ann1.74V199 Arachis hypogaea HOM05D005999 ORTHO05D003360 1.1e-08 65.1 77 44.2
arahy.Tifrunner.gnm1.ann1.JK0YGC Arachis hypogaea HOM05D005999 ORTHO05D003360 1.1e-08 65.1 77 44.2
Psat2g151600 Pisum sativum HOM05D005999 ORTHO05D003360 1.9e-08 64.3 85 42.4
SalBow5G5732 Salvia bowleyana HOM05D005999 ORTHO05D003360 1.9e-08 64.3 102 35.3
Atru.chr3.914 Acer truncatum HOM05D005999 ORTHO05D003360 2.5e-08 63.9 93 40.9
Atru.chr3.919 Acer truncatum HOM05D005999 ORTHO05D003360 2.5e-08 63.9 93 40.9
MD02G1122900 Malus domestica HOM05D005999 ORTHO05D003360 2.5e-08 63.9 97 39.2
RcHm_v2.0_Chr1g0316981 Rosa chinensis HOM05D005999 ORTHO05D003360 3.2e-08 63.5 79 40.5
VMungo1215G2992 Vigna mungo HOM05D005999 ORTHO05D003360 3.2e-08 63.5 80 42.5
VMungo1215G1128 Vigna mungo HOM05D005999 ORTHO05D003360 5.5e-08 62.8 94 37.2
PGR119G0821 Punica granatum HOM05D005999 ORTHO05D003360 7.2e-08 62.4 74 47.3
THA.LOC104826498 Tarenaya hassleriana HOM05D005999 ORTHO05D003360 7.2e-08 62.4 96 38.5
Lsat_1_v5_gn_4_143840 Lactuca sativa HOM05D005999 ORTHO05D003360 9.4e-08 62.0 111 36.9
RcHm_v2.0_Chr1g0316921 Rosa chinensis HOM05D005999 ORTHO05D003360 9.4e-08 62.0 71 43.7
Nn6g31889 Nelumbo nucifera HOM05D005999 ORTHO05D003360 1.6e-07 61.2 73 43.8
Phvul.002G103900 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 1.6e-07 61.2 80 41.2
Cc01_g06010 Coffea canephora HOM05D005999 ORTHO05D003360 2.1e-07 60.8 89 37.1
Medtr5g022050 Medicago truncatula HOM05D005999 ORTHO05D003360 3.6e-07 60.1 80 42.5
Phvul.002G104000 Phaseolus vulgaris HOM05D005999 ORTHO05D003360 3.6e-07 60.1 95 37.9
PSO210G1231 Papaver somniferum HOM05D005999 ORTHO05D003360 4.7e-07 59.7 79 43.0
Ah.04g155230 Amaranthus hybridus HOM05D007469 ORTHO05D026517 6.1e-07 59.3 38 68.4
Glyma.11G081800 Glycine max HOM05D005999 ORTHO05D003360 8.0e-07 58.9 93 38.7
Lj6A806T47 Lonicera japonica HOM05D005999 ORTHO05D003360 8.0e-07 58.9 74 40.5
Medtr5g023090 Medicago truncatula HOM05D005999 ORTHO05D003360 8.0e-07 58.9 80 42.5
Gohir.A02G174800 Gossypium hirsutum HOM05D005999 ORTHO05D003360 1.0e-06 58.5 91 39.6
Duzib187G1063 Durio zibethinus HOM05D005999 ORTHO05D003360 1.4e-06 58.2 89 39.3
TPR.G25134 Trifolium pratense HOM05D005999 ORTHO05D003360 1.4e-06 58.2 80 40.0
ClCG01G020640 Citrullus lanatus HOM05D005999 ORTHO05D003360 1.8e-06 57.8 85 40.0
A04p13070 Brassica napus HOM05D007469 ORTHO05D026517 2.3e-06 57.4 28 89.3
TWI73G0962 Tripterygium wilfordii HOM05D005999 ORTHO05D003360 2.3e-06 57.4 94 38.3
Glyma.11G081900 Glycine max HOM05D005999 ORTHO05D003360 5.2e-06 56.2 72 40.3
Os03g0135600 Oryza sativa ssp. japonica HOM05D005999 ORTHO05D003360 5.2e-06 56.2 79 36.7
Sed0006391 Sechium edule HOM05D005999 ORTHO05D003360 6.7e-06 55.8 77 41.6


User provided reference genes

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