Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G47840 Arabidopsis lyrata HOM05D007428 ORTHO05D009308 2.9e-51 204.9 102 100.0
AT5G41560 Arabidopsis thaliana HOM05D007428 ORTHO05D009308 6.5e-51 203.8 102 99.0
CARHR287610 Cardamine hirsuta HOM05D007428 ORTHO05D009308 1.4e-48 196.1 102 94.1
Carub.0007s3391 Capsella rubella HOM05D007428 ORTHO05D009308 3.9e-48 194.5 103 95.1
Sp7g00480 Schrenkiella parvula HOM05D007428 ORTHO05D009308 2.0e-47 192.2 102 94.1
Thhalv10028001m.g Eutrema salsugineum HOM05D007428 ORTHO05D009308 1.1e-45 186.4 102 92.2
A04p14670 Brassica napus HOM05D007428 ORTHO05D009308 7.7e-44 180.3 102 88.2
BraA04t17107Z Brassica rapa HOM05D007428 ORTHO05D009308 7.7e-44 180.3 102 88.2
BcaC02g08952 Brassica carinata HOM05D007428 ORTHO05D009308 1.0e-43 179.9 102 88.2
BolC4t26447H Brassica oleracea HOM05D007428 ORTHO05D009308 1.0e-43 179.9 102 88.2
C04p48540 Brassica napus HOM05D007428 ORTHO05D009308 5.0e-43 177.6 96 88.5
BcaB06g27627 Brassica carinata HOM05D007428 ORTHO05D009308 1.2e-41 172.9 101 83.2
Aa31LG9G500 Aethionema arabicum HOM05D007428 ORTHO05D009308 2.7e-41 171.8 98 84.7
THA.LOC104809367 Tarenaya hassleriana HOM05D007428 ORTHO05D009308 3.6e-41 171.4 97 87.6
Duzib205G1701 Durio zibethinus HOM05D007428 ORTHO05D009308 6.5e-35 150.6 93 79.6
Atru.chr9.2117 Acer truncatum HOM05D007428 ORTHO05D009308 8.5e-35 150.2 94 75.5
Gohir.D03G078400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 2.5e-34 148.7 96 77.1
Gorai.003G085700 Gossypium raimondii HOM05D007428 ORTHO05D009308 2.5e-34 148.7 96 77.1
Ciclev10023047m.g Citrus clementina HOM05D007428 ORTHO05D009308 9.4e-34 146.7 95 73.7
Duzib084G1020 Durio zibethinus HOM05D007428 ORTHO05D009308 2.1e-33 145.6 94 75.5
GSVIVG01019416001 Vitis vinifera HOM05D007428 ORTHO05D009308 4.7e-33 144.4 94 74.5
Gohir.D08G134500 Gossypium hirsutum HOM05D001458 ORTHO05D008462 6.1e-33 144.1 94 75.5
Eucgr.D01813 Eucalyptus grandis HOM05D007428 ORTHO05D009308 1.4e-32 142.9 98 72.4
Potri.001G099200 Populus trichocarpa HOM05D007428 ORTHO05D009308 1.4e-32 142.9 94 73.4
Actinidia10608 Actinidia chinensis HOM05D007428 ORTHO05D009308 1.8e-32 142.5 98 69.4
Manes.02G017900 Manihot esculenta HOM05D007428 ORTHO05D009308 5.2e-32 141.0 94 72.3
AUR62039842 Chenopodium quinoa HOM05D007428 ORTHO05D009308 6.8e-32 140.6 96 71.9
Dinv38899 Davidia involucrata HOM05D007428 ORTHO05D009308 1.2e-31 139.8 96 68.8
Gohir.A08G114300 Gossypium hirsutum HOM05D007428 ORTHO05D009308 1.2e-31 139.8 94 73.4
AUR62000169 Chenopodium quinoa HOM05D007428 ORTHO05D009308 1.5e-31 139.4 96 70.8
DCAR_005573 Daucus carota HOM05D007428 ORTHO05D009308 1.7e-30 136.0 94 71.3
Lalb_Chr25g0287261 Lupinus albus HOM05D007428 ORTHO05D009308 1.7e-30 136.0 84 75.0
PGR031G0112 Punica granatum HOM05D007428 ORTHO05D009308 1.7e-30 136.0 94 70.2
ClCG01G002350 Citrullus lanatus HOM05D007428 ORTHO05D009308 2.8e-30 135.2 97 67.0
Peaxi162Scf00102g01635 Petunia axillaris HOM05D007428 ORTHO05D009308 2.8e-30 135.2 93 69.9
MELO3C005713.2 Cucumis melo HOM05D007428 ORTHO05D009308 3.7e-30 134.8 97 67.0
CsaV3_5G002410 Cucumis sativus L. HOM05D007428 ORTHO05D009308 3.7e-30 134.8 97 67.0
CiPaw.11G129900 Carya illinoinensis HOM05D007428 ORTHO05D009308 8.3e-30 133.7 93 73.1
Prupe.5G106400 Prunus persica HOM05D007428 ORTHO05D009308 8.3e-30 133.7 99 64.6
EL10Ac4g10178 Beta vulgaris HOM05D007428 ORTHO05D009308 1.8e-29 132.5 97 68.0
CSS0042206 Camellia sinensis var. sinensis HOM05D007428 ORTHO05D009308 5.4e-29 131.0 96 66.7
PGSC0003DMG400005826 Solanum tuberosum HOM05D007428 ORTHO05D009308 7.0e-29 130.6 93 66.7
Sabra01G0074400 Salix brachista HOM05D007428 ORTHO05D009308 9.1e-29 130.2 94 69.1
TAR374G0673 Trochodendron aralioides HOM05D007428 ORTHO05D009308 2.0e-28 129.0 97 63.9
Solyc08g008120.4 Solanum lycopersicum HOM05D007428 ORTHO05D009308 2.7e-28 128.6 93 65.6
Sopen08g003980 Solanum pennellii HOM05D007428 ORTHO05D009308 2.7e-28 128.6 93 65.6
Sed0012859 Sechium edule HOM05D007428 ORTHO05D009308 3.5e-28 128.3 97 63.9
ATR0661G028 Amborella trichopoda HOM05D007428 ORTHO05D009308 5.9e-28 127.5 97 61.9
Cfa012244 Carpinus fangiana HOM05D007428 ORTHO05D009308 7.7e-28 127.1 94 70.2
Duzib068G1017 Durio zibethinus HOM05D007428 ORTHO05D009308 7.7e-28 127.1 70 84.3
SEGI_01808 Sequoiadendron giganteum HOM05D007428 ORTHO05D009308 1.3e-27 126.3 95 61.1
Nn1g01671 Nelumbo nucifera HOM05D007428 ORTHO05D009308 1.7e-27 125.9 97 63.9
MBI11_g02029_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 2.9e-27 125.2 97 62.9
HPP92_001758 Vanilla planifolia HOM05D007428 ORTHO05D009308 2.9e-27 125.2 99 62.6
RcHm_v2.0_Chr7g0196601 Rosa chinensis HOM05D007428 ORTHO05D009308 6.5e-27 124.0 98 64.3
Gorai.004G137700 Gossypium raimondii HOM05D007428 ORTHO05D009308 8.6e-27 123.6 70 82.9
Phvul.001G130100 Phaseolus vulgaris HOM05D007428 ORTHO05D009308 8.6e-27 123.6 93 65.6
TAR375G0610 Trochodendron aralioides HOM05D007428 ORTHO05D009308 8.6e-27 123.6 92 63.0
CDE04G2716 Ceratophyllum demersum HOM05D007428 ORTHO05D009308 1.1e-26 123.2 93 65.6
FAN04G2816 Fragaria x ananassa HOM05D007428 ORTHO05D009308 1.1e-26 123.2 98 63.3
FAN13G2357 Fragaria x ananassa HOM05D007428 ORTHO05D009308 1.1e-26 123.2 98 63.3
FAN18G4254 Fragaria x ananassa HOM05D007428 ORTHO05D009308 1.1e-26 123.2 98 63.3
CANSAT21G2180 Cannabis sativa HOM05D007428 ORTHO05D009308 4.2e-26 121.3 99 65.7
ECA246G0502 Erigeron canadensis HOM05D007428 ORTHO05D009308 4.2e-26 121.3 94 63.8
Glyma.19G137300 Glycine max HOM05D007428 ORTHO05D009308 5.5e-26 120.9 93 65.6
Lsat_1_v5_gn_3_8800 Lactuca sativa HOM05D007428 ORTHO05D009308 9.5e-26 120.2 87 65.5
PSO782G0783 Papaver somniferum HOM05D007428 ORTHO05D009308 9.5e-26 120.2 98 62.2
MD06G1090900 Malus domestica HOM05D007428 ORTHO05D009308 2.1e-25 119.0 99 62.6
Medtr7g091260 Medicago truncatula HOM05D007428 ORTHO05D009308 2.1e-25 119.0 93 63.4
CiPaw.12G089300 Carya illinoinensis HOM05D007428 ORTHO05D009308 6.1e-25 117.5 95 66.3
QL12p031804 Quercus lobata HOM05D007428 ORTHO05D009308 1.4e-24 116.3 135 51.1
Rhsim02G0235600 Rhododendron simsii HOM05D007428 ORTHO05D009308 1.4e-24 116.3 143 46.9
Cc08_g15240 Coffea canephora HOM05D007428 ORTHO05D009308 3.0e-24 115.2 96 59.4
TPR.G18241 Trifolium pratense HOM05D007428 ORTHO05D009308 5.2e-24 114.4 93 60.2
SGA_v2.0_scaffold111G31471 Striga asiatica HOM05D007428 ORTHO05D009308 2.6e-23 112.1 95 58.9
Aqoxy7G00179 Aquilegia oxysepala HOM05D007428 ORTHO05D009308 3.4e-23 111.7 96 56.2
arahy.Tifrunner.gnm1.ann1.I9CJRL Arachis hypogaea HOM05D007428 ORTHO05D009308 3.4e-23 111.7 90 62.2
Glyma.03G134700 Glycine max HOM05D007428 ORTHO05D009308 3.4e-23 111.7 97 60.8
Lj1g0002351 Lotus japonicus HOM05D007428 ORTHO05D009308 3.4e-23 111.7 93 58.1
Hma1.2p1_0216F.1_g091060 Hydrangea macrophylla HOM05D007428 ORTHO05D009308 4.4e-23 111.3 96 57.3
PSO478G2995 Papaver somniferum HOM05D007428 ORTHO05D009308 9.8e-23 110.2 98 59.2
SMO117G0109 Selaginella moellendorffii HOM05D007428 ORTHO05D009308 9.8e-23 110.2 84 61.9
Nn6g32110 Nelumbo nucifera HOM05D007428 ORTHO05D009308 6.3e-22 107.5 80 66.2
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 6.3e-22 107.5 98 56.1
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.1e-21 106.7 88 64.8
arahy.Tifrunner.gnm1.ann1.LGCW4P Arachis hypogaea HOM05D007428 ORTHO05D009308 9.2e-21 103.6 104 53.8
Ah.06g194380 Amaranthus hybridus HOM05D007428 ORTHO05D009308 1.6e-20 102.8 167 42.5
Zm00001eb001890 Zea mays HOM05D007428 ORTHO05D009308 2.7e-20 102.1 88 62.5
COL.COLO4_08363 Corchorus olitorius HOM05D007428 ORTHO05D009308 2.9e-19 98.6 64 73.4
Zm00001eb403670 Zea mays HOM05D007428 ORTHO05D009308 3.8e-19 98.2 89 61.8
Gohir.A02G105400 Gossypium hirsutum HOM05D007428 ORTHO05D009308 5.6e-18 94.4 53 83.0
Os03g0125700 Oryza sativa ssp. japonica HOM05D007428 ORTHO05D009308 9.5e-18 93.6 95 56.8
Thecc.03G286400 Theobroma cacao HOM05D007428 ORTHO05D009308 1.6e-17 92.8 49 85.7
HPP92_003464 Vanilla planifolia HOM05D007428 ORTHO05D009308 1.0e-16 90.1 66 63.6
Nitab4.5_0007906g0040 Nicotiana tabacum HOM05D007428 ORTHO05D009308 2.3e-16 89.0 94 54.3
Sc01g0009840 Simmondsia chinensis HOM05D007428 ORTHO05D009308 2.3e-16 89.0 49 83.7
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 1.2e-15 86.7 69 62.3
DCAR_008355 Daucus carota HOM05D001458 ORTHO05D008462 1.7e-14 82.8 70 60.0
FvH4_5g03180 Fragaria vesca HOM05D007428 ORTHO05D009308 2.9e-14 82.0 69 62.3
MD14G1111700 Malus domestica HOM05D007428 ORTHO05D009308 3.2e-13 78.6 69 56.5
Cfa012240 Carpinus fangiana HOM05D007428 ORTHO05D009308 1.2e-12 76.6 65 63.1
MBI17_g11952_MAGBIO Magnolia biondii HOM05D007428 ORTHO05D009308 7.8e-12 73.9 49 63.3
vmacro11409 Vaccinium macrocarpon HOM05D007428 ORTHO05D009308 5.8e-07 57.8 46 60.9
HanXRQChr17g0533231 Helianthus annuus HOM05D007428 ORTHO05D009308 1.7e-06 56.2 61 52.5
CAN.G792.73 Capsicum annuum HOM05D003118 ORTHO05D009308 3.7e-06 55.1 45 60.0


User provided reference genes

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