Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 6.7e-82 307.4 163 100.0
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 8.2e-80 300.4 164 98.8
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 2.7e-67 258.8 166 86.7
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 1.4e-66 256.5 194 75.8
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 4.3e-65 251.5 164 84.8
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 3.1e-63 245.4 164 83.5
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 7.7e-62 240.7 164 82.3
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 4.4e-57 224.9 157 76.4
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 6.3e-56 221.1 164 78.0
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 6.3e-56 221.1 164 78.0
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 4.1e-55 218.4 164 76.8
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 5.9e-54 214.5 158 70.9
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 2.2e-53 212.6 158 71.5
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 2.9e-53 212.2 118 96.6
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 3.8e-53 211.8 156 78.2
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 5.0e-53 211.5 157 77.7
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 1.5e-52 209.9 157 69.4
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 2.1e-51 206.1 158 69.0
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.1e-51 206.1 158 69.0
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 1.0e-50 203.8 158 69.0
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 1.8e-50 203.0 155 69.0
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.8e-50 203.0 158 68.4
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 2.3e-50 202.6 153 68.6
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 5.7e-49 198.0 158 68.4
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 9.7e-49 197.2 155 68.4
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 8.2e-48 194.1 155 67.7
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 1.8e-47 193.0 157 68.2
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 2.4e-47 192.6 157 66.9
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 2.4e-47 192.6 157 67.5
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 2.4e-47 192.6 157 67.5
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 5.3e-47 191.4 155 67.1
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 5.3e-47 191.4 157 66.9
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 9.1e-47 190.7 157 66.2
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 9.1e-47 190.7 153 67.3
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 1.2e-46 190.3 157 66.2
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 3.5e-46 188.7 153 66.7
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 3.5e-46 188.7 156 66.0
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 1.0e-45 187.2 153 64.7
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 2.9e-45 185.7 157 65.0
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 2.9e-45 185.7 155 65.8
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 3.8e-45 185.3 153 66.7
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 5.0e-45 184.9 156 65.4
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 5.0e-45 184.9 146 69.9
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 6.5e-45 184.5 155 65.2
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 6.5e-45 184.5 156 64.7
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 8.5e-45 184.1 154 64.9
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 8.5e-45 184.1 155 62.6
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 1.1e-44 183.7 155 65.8
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 1.5e-44 183.3 155 65.2
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 1.9e-44 183.0 155 65.8
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 2.5e-44 182.6 154 66.2
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 2.5e-44 182.6 155 66.5
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 2.5e-44 182.6 157 65.0
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 2.5e-44 182.6 153 62.7
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 4.2e-44 181.8 154 65.6
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 5.5e-44 181.4 155 64.5
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 7.2e-44 181.0 155 64.5
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 9.4e-44 180.6 154 66.9
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 9.4e-44 180.6 154 66.2
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 9.4e-44 180.6 156 64.1
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 1.2e-43 180.3 154 66.9
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 2.7e-43 179.1 148 68.9
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 3.6e-43 178.7 155 64.5
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 4.7e-43 178.3 157 61.8
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 4.7e-43 178.3 145 67.6
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 8.0e-43 177.6 154 66.2
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 8.0e-43 177.6 158 64.6
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 8.0e-43 177.6 156 62.8
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 1.0e-42 177.2 153 64.7
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.0e-42 177.2 153 60.8
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 1.8e-42 176.4 154 65.6
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.8e-42 176.4 154 65.6
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.8e-42 176.4 154 65.6
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 2.3e-42 176.0 155 63.2
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 4.0e-42 175.3 156 63.5
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 4.0e-42 175.3 154 64.9
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 5.2e-42 174.9 152 64.5
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.2e-41 173.7 150 66.7
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 1.5e-41 173.3 150 66.0
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 2.6e-41 172.6 154 64.3
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 4.4e-41 171.8 154 61.0
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 4.4e-41 171.8 155 63.2
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 5.7e-41 171.4 156 60.9
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 9.7e-41 170.6 138 68.1
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 6.3e-40 167.9 152 60.5
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.4e-39 166.8 154 61.0
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.4e-39 166.8 155 62.6
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 2.4e-39 166.0 155 62.6
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 4.1e-39 165.2 150 62.7
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 5.3e-39 164.9 151 64.2
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 9.1e-39 164.1 154 63.6
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.2e-38 163.7 170 58.8
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.2e-38 163.7 154 63.6
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.5e-38 162.2 150 62.0
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 1.0e-37 160.6 152 63.8
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 1.3e-37 160.2 155 59.4
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 1.7e-37 159.8 153 59.5
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.7e-37 159.8 150 61.3
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.7e-37 159.8 150 61.3
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 3.8e-37 158.7 152 61.8
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 8.5e-37 157.5 150 58.7
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 8.5e-37 157.5 150 58.7
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 8.5e-37 157.5 150 58.7
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 1.1e-36 157.1 150 62.7
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 1.9e-36 156.4 198 51.5
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 2.5e-36 156.0 147 59.9
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 2.5e-36 156.0 147 59.9
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 3.2e-36 155.6 155 58.7
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 4.2e-36 155.2 144 64.6
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 4.2e-36 155.2 118 68.6
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 1.6e-35 153.3 125 67.2
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 2.1e-35 152.9 141 63.1
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 2.7e-35 152.5 152 61.2
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 3.6e-35 152.1 152 60.5
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 3.6e-35 152.1 160 56.9
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 4.7e-35 151.8 152 60.5
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 6.1e-35 151.4 220 45.0
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 1.0e-34 150.6 152 61.2
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 3.0e-34 149.1 126 69.8
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 4.0e-34 148.7 152 59.9
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.2e-34 148.3 153 56.2
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 6.8e-34 147.9 152 60.5
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 3.4e-33 145.6 127 64.6
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 4.4e-33 145.2 152 59.9
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 6.3e-32 141.4 161 54.0
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 6.3e-32 141.4 152 55.3
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 8.3e-32 141.0 92 78.3
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 1.8e-31 139.8 157 54.1
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 3.1e-31 139.0 155 52.3
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 4.1e-31 138.7 152 56.6
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 9.1e-31 137.5 113 68.1
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.6e-30 136.7 148 54.1
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 2.0e-30 136.3 98 73.5
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 2.7e-30 136.0 122 62.3
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 3.5e-30 135.6 111 66.7
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 7.7e-30 134.4 145 55.2
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 7.7e-30 134.4 182 50.0
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 1.7e-29 133.3 151 52.3
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 1.7e-29 133.3 153 51.6
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.3e-29 132.9 126 57.1
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 3.8e-29 132.1 150 52.7
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 5.0e-29 131.7 170 50.0
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 5.0e-29 131.7 149 54.4
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 8.6e-29 131.0 143 55.2
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 7.2e-28 127.9 137 55.5
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 7.2e-28 127.9 92 83.7
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 1.2e-27 127.1 161 49.7
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 1.6e-27 126.7 93 69.9
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.8e-27 125.9 90 73.3
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 6.1e-27 124.8 89 70.8
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 1.4e-26 123.6 154 53.2
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 2.3e-26 122.9 91 69.2
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 4.0e-26 122.1 118 61.0
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 4.0e-26 122.1 153 49.0
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 5.2e-26 121.7 89 71.9
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 6.8e-26 121.3 92 77.2
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 8.9e-26 120.9 165 49.1
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.5e-25 120.2 95 66.3
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 9.8e-25 117.5 267 36.0
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 2.8e-24 115.9 91 63.7
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 1.8e-23 113.2 154 48.7
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 3.2e-23 112.5 150 48.0
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 1.0e-21 107.5 150 48.7
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 1.0e-21 107.5 168 45.2
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 1.2e-17 94.0 93 60.2
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 4.9e-16 88.6 77 55.8
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 6.0e-14 81.6 83 48.2
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 1.7e-13 80.1 85 56.5
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 3.9e-13 79.0 99 51.5
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.0e-13 78.6 69 60.9
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 3.3e-12 75.9 60 61.7
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 8.0e-11 71.2 65 58.5
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 1.7e-08 63.5 76 47.4
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 2.7e-06 56.2 120 36.7
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 6.0e-06 55.1 45 57.8
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 6.0e-06 55.1 41 65.9


User provided reference genes

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