Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G40920 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.1e-150 536.6 272 100.0
AT4G14910 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 3.2e-137 491.9 270 93.0
CARHR221500 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.2e-131 473.4 272 90.8
Carub.0007s2719 Capsella rubella HOM05D004138 ORTHO05D004898 1.0e-127 460.3 272 88.6
BcaB02g07851 Brassica carinata HOM05D004138 ORTHO05D004898 1.1e-124 450.3 270 87.0
Sp7g13050 Schrenkiella parvula HOM05D004138 ORTHO05D004898 3.1e-124 448.7 268 88.4
Thhalv10025980m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 3.2e-121 438.7 267 86.9
Sp3g20190 Schrenkiella parvula HOM05D004138 ORTHO05D004898 7.1e-121 437.6 270 84.4
CARHR098330 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.2e-120 436.8 278 84.2
Thhalv10021310m.g Eutrema salsugineum HOM05D004138 ORTHO05D004898 4.6e-120 434.9 270 83.7
BcaB06g26344 Brassica carinata HOM05D004138 ORTHO05D004898 2.3e-119 432.6 270 83.3
BcaC09g49174 Brassica carinata HOM05D004138 ORTHO05D004898 1.9e-118 429.5 267 82.4
BcaB04g20518 Brassica carinata HOM05D004138 ORTHO05D004898 2.8e-117 425.6 268 83.2
Carub.0003s2260 Capsella rubella HOM05D004138 ORTHO05D004898 6.3e-117 424.5 270 83.3
AT3G22425 Arabidopsis thaliana HOM05D004138 ORTHO05D004898 1.1e-116 423.7 270 82.6
BcaC05g28070 Brassica carinata HOM05D004138 ORTHO05D004898 1.1e-116 423.7 272 82.0
C05p40930 Brassica napus HOM05D004138 ORTHO05D004898 1.1e-116 423.7 272 82.0
C01p41840 Brassica napus HOM05D004138 ORTHO05D004898 2.9e-114 415.6 257 82.1
A01p32660 Brassica napus HOM05D004138 ORTHO05D004898 6.5e-114 414.5 262 82.8
THA.LOC104808545 Tarenaya hassleriana HOM05D004138 ORTHO05D004898 6.5e-114 414.5 274 79.2
BolC1t04138H Brassica oleracea HOM05D004138 ORTHO05D004898 1.1e-113 413.7 257 81.7
A05p26300 Brassica napus HOM05D004138 ORTHO05D004898 9.3e-113 410.6 261 83.1
BraA01t03394Z Brassica rapa HOM05D004138 ORTHO05D004898 1.2e-112 410.2 263 81.7
BolC5t32835H Brassica oleracea HOM05D004138 ORTHO05D004898 6.1e-112 407.9 262 81.3
Aa31LG8G8990 Aethionema arabicum HOM05D004138 ORTHO05D004898 4.3e-110 401.7 275 77.5
Sed0017770 Sechium edule HOM05D004138 ORTHO05D004898 2.7e-104 382.5 264 74.6
Nn4g26636 Nelumbo nucifera HOM05D004138 ORTHO05D004898 1.4e-103 380.2 266 74.8
PGR004G1517 Punica granatum HOM05D004138 ORTHO05D004898 2.3e-103 379.4 272 74.3
Atru.ctg752_3.80 Acer truncatum HOM05D004138 ORTHO05D004898 3.9e-103 378.6 262 76.7
Ciclev10005599m.g Citrus clementina HOM05D004138 ORTHO05D004898 5.1e-103 378.3 282 72.7
FvH4_4g15510 Fragaria vesca HOM05D004138 ORTHO05D004898 6.7e-103 377.9 270 73.3
Phvul.007G057200 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 8.8e-103 377.5 208 91.3
Phvul.007G275100 Phaseolus vulgaris HOM05D004138 ORTHO05D004898 2.0e-102 376.3 211 88.6
arahy.Tifrunner.gnm1.ann1.WZ653D Arachis hypogaea HOM05D004138 ORTHO05D004898 3.3e-102 375.6 225 86.7
arahy.Tifrunner.gnm1.ann1.M0DXBI Arachis hypogaea HOM05D004138 ORTHO05D004898 4.3e-102 375.2 225 86.7
Potri.010G087600 Populus trichocarpa HOM05D004138 ORTHO05D004898 5.7e-102 374.8 269 74.0
VMungo0720G1944 Vigna mungo HOM05D004138 ORTHO05D004898 1.3e-101 373.6 214 86.9
Hma1.2p1_1344F.1_g277140 Hydrangea macrophylla HOM05D004138 ORTHO05D004898 2.2e-101 372.9 263 75.3
Manes.03G178800 Manihot esculenta HOM05D004138 ORTHO05D004898 3.7e-101 372.1 281 73.0
VMungo0720G0383 Vigna mungo HOM05D004138 ORTHO05D004898 3.7e-101 372.1 208 89.9
PSO832G0920 Papaver somniferum HOM05D004138 ORTHO05D004898 6.3e-101 371.3 232 81.5
TWI15G0835 Tripterygium wilfordii HOM05D004138 ORTHO05D004898 1.1e-100 370.5 206 90.3
arahy.Tifrunner.gnm1.ann1.Y7X6HY Arachis hypogaea HOM05D004138 ORTHO05D004898 1.8e-100 369.8 225 85.3
PSO210G3182 Papaver somniferum HOM05D004138 ORTHO05D004898 1.8e-100 369.8 232 81.5
Glyma.20G145900 Glycine max HOM05D004138 ORTHO05D004898 2.4e-100 369.4 208 89.9
Lj5g0002897 Lotus japonicus HOM05D004138 ORTHO05D004898 4.1e-100 368.6 279 73.5
RcHm_v2.0_Chr4g0416251 Rosa chinensis HOM05D004138 ORTHO05D004898 5.3e-100 368.2 267 71.5
TPR.G34563 Trifolium pratense HOM05D004138 ORTHO05D004898 5.3e-100 368.2 246 77.6
Lalb_Chr10g0096121 Lupinus albus HOM05D004138 ORTHO05D004898 6.9e-100 367.9 199 90.5
QL06p002509 Quercus lobata HOM05D004138 ORTHO05D004898 6.9e-100 367.9 276 71.0
CANSAT78G2043 Cannabis sativa HOM05D004138 ORTHO05D004898 9.1e-100 367.5 229 83.4
Psat6g207600 Pisum sativum HOM05D004138 ORTHO05D004898 1.2e-99 367.1 273 73.3
Gorai.006G239100 Gossypium raimondii HOM05D004138 ORTHO05D004898 2.0e-99 366.3 275 72.4
MD16G1193500 Malus domestica HOM05D004138 ORTHO05D004898 2.6e-99 365.9 267 73.8
SalBow3G1121 Salvia bowleyana HOM05D004138 ORTHO05D004898 2.6e-99 365.9 213 84.0
Eucgr.H03482 Eucalyptus grandis HOM05D004138 ORTHO05D004898 5.9e-99 364.8 223 83.4
MD13G1192800 Malus domestica HOM05D004138 ORTHO05D004898 7.7e-99 364.4 291 69.8
DCAR_027216 Daucus carota HOM05D004138 ORTHO05D004898 1.0e-98 364.0 198 89.9
Gohir.A09G215700 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.0e-98 364.0 275 72.7
CSS0012312 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.3e-98 363.6 276 72.8
CSS0016260 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.3e-98 363.6 276 73.6
Gohir.D09G218200 Gossypium hirsutum HOM05D004138 ORTHO05D004898 1.3e-98 363.6 275 72.0
CsaV3_7G022530 Cucumis sativus L. HOM05D004138 ORTHO05D004898 2.2e-98 362.8 269 70.6
Lalb_Chr17g0338611 Lupinus albus HOM05D004138 ORTHO05D004898 2.2e-98 362.8 199 91.0
Ca_26329_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 2.9e-98 362.5 278 70.5
Duzib052G0532 Durio zibethinus HOM05D004138 ORTHO05D004898 3.8e-98 362.1 270 73.7
FAN07G1942 Fragaria x ananassa HOM05D004138 ORTHO05D004898 3.8e-98 362.1 263 72.2
FAN17G0737 Fragaria x ananassa HOM05D004138 ORTHO05D004898 3.8e-98 362.1 263 72.2
Ca_10902_v3 Cicer arietinum L. HOM05D004138 ORTHO05D004898 5.0e-98 361.7 250 76.4
FAN12G1931 Fragaria x ananassa HOM05D004138 ORTHO05D004898 5.0e-98 361.7 261 72.4
Dinv44535 Davidia involucrata HOM05D004138 ORTHO05D004898 6.5e-98 361.3 271 72.7
Thecc.04G231800 Theobroma cacao HOM05D004138 ORTHO05D004898 6.5e-98 361.3 278 71.9
TAR636G0642 Trochodendron aralioides HOM05D004138 ORTHO05D004898 6.5e-98 361.3 225 82.2
Cfa015643 Carpinus fangiana HOM05D004138 ORTHO05D004898 8.5e-98 360.9 260 74.6
Lsat_1_v5_gn_2_31480 Lactuca sativa HOM05D004138 ORTHO05D004898 8.5e-98 360.9 269 71.7
Oeu050278.3 Olea europaea HOM05D004138 ORTHO05D004898 1.1e-97 360.5 261 73.6
MSTRG.21855 Avicennia marina HOM05D004138 ORTHO05D004898 2.5e-97 359.4 263 72.6
TPR.G5464 Trifolium pratense HOM05D004138 ORTHO05D004898 2.5e-97 359.4 271 71.6
CAN.G490.3 Capsicum annuum HOM05D004138 ORTHO05D004898 3.2e-97 359.0 267 70.4
FAN22G1640 Fragaria x ananassa HOM05D004138 ORTHO05D004898 3.2e-97 359.0 223 80.3
CiPaw.02G097200 Carya illinoinensis HOM05D004138 ORTHO05D004898 9.4e-97 357.5 272 71.3
Sopen09g030850 Solanum pennellii HOM05D004138 ORTHO05D004898 9.4e-97 357.5 227 78.0
Solyc09g076020.3 Solanum lycopersicum HOM05D004138 ORTHO05D004898 2.1e-96 356.3 201 86.1
DCAR_002386 Daucus carota HOM05D004138 ORTHO05D004898 2.7e-96 355.9 234 77.4
Lj3A735T49 Lonicera japonica HOM05D004138 ORTHO05D004898 2.7e-96 355.9 273 70.7
PGSC0003DMG400030085 Solanum tuberosum HOM05D004138 ORTHO05D004898 3.6e-96 355.5 201 86.6
Migut.N00183 Erythranthe guttata HOM05D004138 ORTHO05D004898 4.7e-96 355.1 219 80.4
Medtr1g103820 Medicago truncatula HOM05D004138 ORTHO05D004898 4.7e-96 355.1 214 83.2
CiPaw.01G165700 Carya illinoinensis HOM05D004138 ORTHO05D004898 7.9e-96 354.4 260 71.9
AUR62033623 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.4e-95 353.6 212 84.0
Aqoxy2G03389 Aquilegia oxysepala HOM05D004138 ORTHO05D004898 3.0e-95 352.4 268 70.5
Lj6A608T71 Lonicera japonica HOM05D004138 ORTHO05D004898 3.0e-95 352.4 222 78.8
Cc03_g03750 Coffea canephora HOM05D004138 ORTHO05D004898 6.7e-95 351.3 213 80.8
Haze_00903 Corylus avellana HOM05D004138 ORTHO05D004898 6.7e-95 351.3 267 72.3
ECA238G3454 Erigeron canadensis HOM05D004138 ORTHO05D004898 1.1e-94 350.5 234 76.5
Nitab4.5_0001560g0020 Nicotiana tabacum HOM05D004138 ORTHO05D004898 1.5e-94 350.1 191 89.0
Sc10g0004960 Simmondsia chinensis HOM05D004138 ORTHO05D004898 2.6e-94 349.4 257 73.2
HanXRQChr14g0432251 Helianthus annuus HOM05D004138 ORTHO05D004898 3.3e-94 349.0 238 75.2
EL10Ac1g01312 Beta vulgaris HOM05D004138 ORTHO05D004898 2.2e-93 346.3 206 82.0
CDE07G0326 Ceratophyllum demersum HOM05D004138 ORTHO05D004898 2.8e-93 345.9 198 85.9
ATR0697G231 Amborella trichopoda HOM05D004138 ORTHO05D004898 4.8e-93 345.1 230 76.1
GSVIVG01017973001 Vitis vinifera HOM05D004138 ORTHO05D004898 6.3e-93 344.7 223 78.0
AUR62034751 Chenopodium quinoa HOM05D004138 ORTHO05D004898 1.1e-92 344.0 203 84.7
Rhsim02G0024100 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.1e-92 344.0 189 88.4
TAR365G0475 Trochodendron aralioides HOM05D004138 ORTHO05D004898 2.4e-92 342.8 224 78.1
Haze_03894 Corylus avellana HOM05D004138 ORTHO05D004898 3.1e-92 342.4 268 71.3
Os04g0617800 Oryza sativa ssp. japonica HOM05D004138 ORTHO05D004898 5.3e-92 341.7 229 77.7
HanXRQChr09g0265721 Helianthus annuus HOM05D004138 ORTHO05D004898 1.2e-91 340.5 268 69.4
Pp3c13_21930 Physcomitrium patens HOM05D004138 ORTHO05D004898 1.7e-90 336.7 198 83.3
MELO3C012647.2 Cucumis melo HOM05D004138 ORTHO05D004898 2.9e-90 335.9 287 64.5
Zm00001eb070570 Zea mays HOM05D004138 ORTHO05D004898 9.4e-89 330.9 224 76.3
Mapoly0095s0045 Marchantia polymorpha HOM05D004138 ORTHO05D004898 1.2e-88 330.5 240 70.4
Sed0010859 Sechium edule HOM05D004138 ORTHO05D004898 2.1e-88 329.7 263 68.4
CBR_g48324 Chara braunii HOM05D004138 ORTHO05D004898 8.8e-87 324.3 196 80.1
Rhsim02G0024500 Rhododendron simsii HOM05D004138 ORTHO05D004898 8.8e-87 324.3 304 60.2
Cpa.g.sc58.111 Carica papaya HOM05D004138 ORTHO05D004898 4.4e-86 322.0 224 75.9
Actinidia36959 Actinidia chinensis HOM05D004138 ORTHO05D004898 2.0e-83 313.2 267 67.0
Nitab4.5_0000043g0130 Nicotiana tabacum HOM05D004138 ORTHO05D004898 3.5e-83 312.4 205 78.0
Hund12131 Selenicereus undatus HOM05D004138 ORTHO05D004898 5.0e-82 308.5 278 64.7
Psat6g050360 Pisum sativum HOM05D004138 ORTHO05D004898 6.5e-82 308.1 166 89.8
Potri.008G152701 Populus trichocarpa HOM05D004138 ORTHO05D004898 1.9e-81 306.6 195 79.5
Prupe.1G013300 Prunus persica HOM05D004138 ORTHO05D004898 4.2e-81 305.4 287 63.1
SMO367G0933 Selaginella moellendorffii HOM05D004138 ORTHO05D004898 6.8e-79 298.1 235 65.5
COL.COLO4_04735 Corchorus olitorius HOM05D004138 ORTHO05D004898 1.5e-78 297.0 166 89.2
Rhsim02G0024700 Rhododendron simsii HOM05D004138 ORTHO05D004898 2.0e-78 296.6 315 56.8
ClCG06G006210 Citrullus lanatus HOM05D004138 ORTHO05D004898 2.2e-77 293.1 269 63.6
SGA_v2.0_scaffold20G09126 Striga asiatica HOM05D004138 ORTHO05D004898 2.9e-74 282.7 155 85.8
Rhsim02G0025100 Rhododendron simsii HOM05D004138 ORTHO05D004898 3.8e-74 282.3 224 67.0
Oeu031232.1 Olea europaea HOM05D004138 ORTHO05D004898 1.1e-73 280.8 153 86.9
Cre02.g103850 Chlamydomonas reinhardtii HOM05D004138 ORTHO05D004898 3.2e-73 279.3 221 64.7
SGA_v2.0_scaffold10G05080 Striga asiatica HOM05D004138 ORTHO05D004898 4.2e-73 278.9 169 79.3
AL7G43460 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.6e-72 276.9 159 89.3
Peaxi162Scf00092g01021 Petunia axillaris HOM05D004138 ORTHO05D004898 1.2e-70 270.8 145 92.4
Rhsim02G0025200 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.2e-70 270.8 278 59.0
unitig_0.g724 Utricularia gibba HOM05D004952 ORTHO05D006131 7.5e-70 268.1 165 77.0
Rhsim02G0024200 Rhododendron simsii HOM05D004138 ORTHO05D004898 1.3e-69 267.3 151 86.8
Dinv13992 Davidia involucrata HOM05D004138 ORTHO05D004898 4.1e-68 262.3 219 66.7
Rhsim02G0024800 Rhododendron simsii HOM05D004138 ORTHO05D004898 7.0e-68 261.5 280 56.8
AL7G43530 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 2.0e-67 260.0 149 87.9
SEGI_10012 Sequoiadendron giganteum HOM05D004138 ORTHO05D004898 2.7e-67 259.6 148 83.8
HPP92_026352 Vanilla planifolia HOM05D004138 ORTHO05D004898 5.9e-67 258.5 234 60.3
Sabra10G0055200 Salix brachista HOM05D004138 ORTHO05D004898 1.1e-65 254.2 224 62.9
MBI06_g26001_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 2.1e-64 250.0 224 62.1
MBI06_g37250_MAGBIO Magnolia biondii HOM05D004138 ORTHO05D004898 4.7e-64 248.8 203 67.5
CDE10G0981 Ceratophyllum demersum HOM05D000366 ORTHO05D000437 3.9e-58 229.2 234 59.0
Lj2g0010828 Lotus japonicus HOM05D004138 ORTHO05D004898 2.5e-57 226.5 167 71.9
AagrBONN_evm.TU.Sc2ySwM_228.3076 Anthoceros agrestis HOM05D004138 ORTHO05D004898 7.3e-57 224.9 134 76.9
Haze_27397 Corylus avellana HOM05D004138 ORTHO05D004898 6.8e-55 218.4 247 45.7
arahy.Tifrunner.gnm1.ann1.PP7NHW Arachis hypogaea HOM05D004138 ORTHO05D004898 6.0e-51 205.3 133 80.5
Ah.04g154580 Amaranthus hybridus HOM05D004138 ORTHO05D004898 6.2e-48 195.3 181 59.7
ATR0661G018 Amborella trichopoda HOM05D004138 ORTHO05D004898 6.8e-47 191.8 139 68.3
Sabra08G0116300 Salix brachista HOM05D004138 ORTHO05D004898 1.3e-45 187.6 329 41.0
SHI00436 Sapria himalayana HOM05D004138 ORTHO05D004898 2.3e-39 166.8 145 60.0
PRCOL_00007017 Prasinoderma coloniale HOM05D004138 ORTHO05D004898 2.2e-37 160.2 188 44.1
MCO15G615 Micromonas commoda HOM05D004138 ORTHO05D004898 4.6e-35 152.5 200 40.0
Cfa024592 Carpinus fangiana HOM05D004138 ORTHO05D004898 1.1e-33 147.9 222 40.5
Actinidia40147 Actinidia chinensis HOM05D004138 ORTHO05D004898 2.6e-30 136.7 84 82.1
arahy.Tifrunner.gnm1.ann1.UX9Z2U Arachis hypogaea HOM05D004138 ORTHO05D004898 3.4e-22 109.8 62 82.3
arahy.Tifrunner.gnm1.ann1.J4BC6Z Arachis hypogaea HOM05D004138 ORTHO05D004898 1.7e-21 107.5 62 80.6
CARHR221520 Cardamine hirsuta HOM05D004138 ORTHO05D004898 1.6e-19 100.9 58 87.9
Psat4g223320 Pisum sativum HOM05D004138 ORTHO05D004898 3.0e-18 96.7 144 47.2
Medtr8g045710 Medicago truncatula HOM05D004138 ORTHO05D004898 3.9e-18 96.3 59 79.7
Rhsim02G0025000 Rhododendron simsii HOM05D004138 ORTHO05D004898 4.6e-11 72.8 41 82.9
AL5G12050 Arabidopsis lyrata HOM05D004138 ORTHO05D004898 1.0e-10 71.6 36 91.7
CSS0002625 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 2.3e-10 70.5 36 88.9
Actinidia40148 Actinidia chinensis HOM05D004138 ORTHO05D004898 1.1e-09 68.2 57 63.2
Medtr1g071390 Medicago truncatula HOM05D004138 ORTHO05D004898 1.9e-09 67.4 118 36.4
Rhsim04G0123400 Rhododendron simsii HOM05D007559 ORTHO05D009642 1.3e-08 64.7 39 76.9
arahy.Tifrunner.gnm1.ann1.RWV13Y Arachis hypogaea HOM05D000351 ORTHO05D018478 6.2e-08 62.4 32 87.5
CSS0029286 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 1.8e-07 60.8 42 69.0
CSS0040239 Camellia sinensis var. sinensis HOM05D004138 ORTHO05D004898 9.0e-07 58.5 34 79.4
Rhsim08G0128300 Rhododendron simsii HOM05D004138 ORTHO05D339665 4.5e-06 56.2 31 80.6


User provided reference genes

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