Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G39540 Arabidopsis lyrata HOM05D004362 ORTHO05D005650 1.1e-104 383.3 188 100.0
AT4G15770 Arabidopsis thaliana HOM05D004362 ORTHO05D005650 7.2e-104 380.6 188 99.5
Carub.0007s2590 Capsella rubella HOM05D004362 ORTHO05D005650 1.6e-103 379.4 188 98.9
CARHR290260 Cardamine hirsuta HOM05D004362 ORTHO05D005650 7.4e-101 370.5 188 96.3
A03p49320 Brassica napus HOM05D004362 ORTHO05D005650 5.3e-99 364.4 188 94.1
BraA03t14033Z Brassica rapa HOM05D004362 ORTHO05D005650 5.3e-99 364.4 188 94.1
BcaC06g32963 Brassica carinata HOM05D004362 ORTHO05D005650 6.9e-99 364.0 188 94.1
BcaC06g32960 Brassica carinata HOM05D004362 ORTHO05D005650 2.0e-98 362.5 188 93.6
C07p47390 Brassica napus HOM05D004362 ORTHO05D005650 2.0e-98 362.5 188 93.6
BolC7t45266H Brassica oleracea HOM05D004362 ORTHO05D005650 2.0e-98 362.5 188 93.6
Sp7g14130 Schrenkiella parvula HOM05D004362 ORTHO05D005650 5.9e-98 360.9 188 93.6
BcaC07g37931 Brassica carinata HOM05D004362 ORTHO05D005650 1.0e-97 360.1 188 93.1
A08p11960 Brassica napus HOM05D004362 ORTHO05D005650 1.0e-97 360.1 188 93.1
BraA08t33187Z Brassica rapa HOM05D004362 ORTHO05D005650 1.0e-97 360.1 188 93.1
BolC1t02658H Brassica oleracea HOM05D004362 ORTHO05D005650 2.2e-97 359.0 188 93.1
A01p21760 Brassica napus HOM05D004362 ORTHO05D005650 3.8e-97 358.2 188 92.6
BraA01t02085Z Brassica rapa HOM05D004362 ORTHO05D005650 3.8e-97 358.2 188 92.6
BolC8t48316H Brassica oleracea HOM05D004362 ORTHO05D005650 1.4e-96 356.3 188 91.5
Thhalv10026330m.g Eutrema salsugineum HOM05D004362 ORTHO05D005650 4.2e-96 354.8 188 91.0
BcaC09g50269 Brassica carinata HOM05D004362 ORTHO05D005650 5.5e-96 354.4 190 92.1
C01p27110 Brassica napus HOM05D004362 ORTHO05D005650 5.5e-96 354.4 190 92.1
Aa31LG10G6340 Aethionema arabicum HOM05D004362 ORTHO05D005650 7.2e-96 354.0 188 91.0
THA.LOC104820258 Tarenaya hassleriana HOM05D004362 ORTHO05D005650 2.1e-95 352.4 188 89.9
TAR362G1261 Trochodendron aralioides HOM05D004362 ORTHO05D005650 5.3e-91 337.8 188 86.2
CANSAT11G1206 Cannabis sativa HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 83.5
CANSAT56G3245 Cannabis sativa HOM05D004362 ORTHO05D005650 9.1e-91 337.0 188 83.5
CiPaw.01G149400 Carya illinoinensis HOM05D004362 ORTHO05D005650 3.4e-90 335.1 188 85.1
Cpa.g.sc16.164 Carica papaya HOM05D004362 ORTHO05D005650 4.5e-90 334.7 188 84.0
FvH4_4g00380 Fragaria vesca HOM05D004362 ORTHO05D005650 4.5e-90 334.7 188 84.0
FAN22G1477 Fragaria x ananassa HOM05D004362 ORTHO05D005650 4.5e-90 334.7 188 84.0
FvH4_6g25030 Fragaria vesca HOM05D004362 ORTHO05D005650 7.7e-90 334.0 188 84.0
BcaB04g18325 Brassica carinata HOM05D004362 ORTHO05D005650 1.0e-89 333.6 188 88.8
FAN17G1564 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.0e-89 333.6 188 83.5
Ciclev10005994m.g Citrus clementina HOM05D004362 ORTHO05D005650 1.7e-89 332.8 188 83.5
MELO3C006657.2 Cucumis melo HOM05D004362 ORTHO05D005650 2.2e-89 332.4 188 84.0
MD03G1177300 Malus domestica HOM05D004362 ORTHO05D005650 2.2e-89 332.4 188 84.0
Medtr3g112090 Medicago truncatula HOM05D004362 ORTHO05D005650 2.2e-89 332.4 188 83.5
RcHm_v2.0_Chr7g0221961 Rosa chinensis HOM05D004362 ORTHO05D005650 2.2e-89 332.4 188 83.0
QL06p008685 Quercus lobata HOM05D004362 ORTHO05D005650 2.9e-89 332.0 187 84.0
TAR633G1411 Trochodendron aralioides HOM05D004362 ORTHO05D005650 2.9e-89 332.0 188 84.6
Hma1.2p1_0698F.1_g205210 Hydrangea macrophylla HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 85.6
Prupe.3G093900 Prunus persica HOM05D004362 ORTHO05D005650 3.8e-89 331.6 188 84.0
Actinidia01468 Actinidia chinensis HOM05D004362 ORTHO05D005650 6.5e-89 330.9 188 85.1
RcHm_v2.0_Chr1g0332291 Rosa chinensis HOM05D004362 ORTHO05D005650 6.5e-89 330.9 188 82.4
VMungo1383G0988 Vigna mungo HOM05D004362 ORTHO05D005650 6.5e-89 330.9 188 82.4
CsaV3_3G014560 Cucumis sativus L. HOM05D004362 ORTHO05D005650 8.5e-89 330.5 188 83.5
Phvul.003G104500 Phaseolus vulgaris HOM05D004362 ORTHO05D005650 8.5e-89 330.5 188 82.4
TPR.G3221 Trifolium pratense HOM05D004362 ORTHO05D005650 8.5e-89 330.5 188 83.0
Ca_15496_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 81.9
Lj6g0015098 Lotus japonicus HOM05D004362 ORTHO05D005650 1.1e-88 330.1 188 83.0
Nn8g40841 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.4e-88 329.7 188 85.1
MD17G1218500 Malus domestica HOM05D004362 ORTHO05D005650 1.9e-88 329.3 188 83.5
Atru.chr4.2815 Acer truncatum HOM05D004362 ORTHO05D005650 2.5e-88 328.9 188 81.4
Sed0020990 Sechium edule HOM05D004362 ORTHO05D005650 3.2e-88 328.6 188 81.9
Cfa015376 Carpinus fangiana HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 84.0
Haze_01219 Corylus avellana HOM05D004362 ORTHO05D005650 5.5e-88 327.8 188 84.0
Aqoxy2G03013 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 7.2e-88 327.4 188 83.0
arahy.Tifrunner.gnm1.ann1.F4LE79 Arachis hypogaea HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 81.4
Lalb_Chr07g0177681 Lupinus albus HOM05D004362 ORTHO05D005650 1.2e-87 326.6 188 81.9
vmacro08137 Vaccinium macrocarpon HOM05D004362 ORTHO05D005650 1.6e-87 326.2 188 84.0
Rhsim04G0220600 Rhododendron simsii HOM05D004362 ORTHO05D005650 2.7e-87 325.5 188 84.0
CSS0031921 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 83.0
CSS0044915 Camellia sinensis var. sinensis HOM05D004362 ORTHO05D005650 3.6e-87 325.1 188 83.0
Manes.03G194200 Manihot esculenta HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 83.0
Sed0024198 Sechium edule HOM05D004362 ORTHO05D005650 6.1e-87 324.3 188 81.4
Ca_21528_v3 Cicer arietinum L. HOM05D004362 ORTHO05D005650 7.9e-87 323.9 188 80.9
Duzib212G1021 Durio zibethinus HOM05D004362 ORTHO05D005650 1.0e-86 323.6 185 82.2
Glyma.05G031500 Glycine max HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 79.8
Glyma.17G095400 Glycine max HOM05D004362 ORTHO05D005650 1.0e-86 323.6 188 79.8
Lj6P674T13 Lonicera japonica HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 83.0
PSO063G3233 Papaver somniferum HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 82.4
PSO170G0314 Papaver somniferum HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 82.4
PSO675G6259 Papaver somniferum HOM05D004362 ORTHO05D005650 1.4e-86 323.2 188 82.4
PSO541G6165 Papaver somniferum HOM05D004362 ORTHO05D005650 1.8e-86 322.8 188 81.9
Thecc.04G283400 Theobroma cacao HOM05D004362 ORTHO05D005650 1.8e-86 322.8 185 81.6
TPR.G12330 Trifolium pratense HOM05D004362 ORTHO05D005650 2.3e-86 322.4 188 80.3
Cc00_g10540 Coffea canephora HOM05D004362 ORTHO05D005650 3.0e-86 322.0 188 83.0
Duzib052G0564 Durio zibethinus HOM05D004362 ORTHO05D005650 3.9e-86 321.6 185 81.6
FAN12G1395 Fragaria x ananassa HOM05D002675 ORTHO05D003322 3.9e-86 321.6 179 83.8
Gohir.D01G023472 Gossypium hirsutum HOM05D004362 ORTHO05D005650 1.1e-85 320.1 185 80.5
Gorai.002G028000 Gossypium raimondii HOM05D004362 ORTHO05D005650 1.1e-85 320.1 185 80.5
Nn4g25890 Nelumbo nucifera HOM05D004362 ORTHO05D005650 1.1e-85 320.1 188 83.5
Aqoxy5G03978 Aquilegia oxysepala HOM05D004362 ORTHO05D005650 2.6e-85 318.9 188 83.0
Psat7g055160 Pisum sativum HOM05D004362 ORTHO05D005650 2.6e-85 318.9 188 79.8
ATR0706G220 Amborella trichopoda HOM05D004362 ORTHO05D005650 3.3e-85 318.5 188 80.3
CAN.G134.195 Capsicum annuum HOM05D004362 ORTHO05D005650 5.7e-85 317.8 188 81.9
Manes.15G013200 Manihot esculenta HOM05D004362 ORTHO05D005650 5.7e-85 317.8 188 81.9
TWI53G0131 Tripterygium wilfordii HOM05D004362 ORTHO05D005650 7.4e-85 317.4 188 79.8
Gohir.A01G031201 Gossypium hirsutum HOM05D004362 ORTHO05D005650 9.7e-85 317.0 185 80.0
Peaxi162Scf00399g00066 Petunia axillaris HOM05D004362 ORTHO05D005650 1.3e-84 316.6 188 82.4
PGR031G1479 Punica granatum HOM05D004362 ORTHO05D005650 1.7e-84 316.2 188 80.9
PGSC0003DMG400022496 Solanum tuberosum HOM05D004362 ORTHO05D005650 4.8e-84 314.7 188 81.4
Dinv29769 Davidia involucrata HOM05D004362 ORTHO05D005650 8.2e-84 313.9 180 83.3
Solyc01g098100.2 Solanum lycopersicum HOM05D004362 ORTHO05D005650 8.2e-84 313.9 188 80.9
Sopen00g012890 Solanum pennellii HOM05D004362 ORTHO05D005650 8.2e-84 313.9 188 80.9
Sopen01g041670 Solanum pennellii HOM05D004362 ORTHO05D005650 8.2e-84 313.9 188 80.9
Nitab4.5_0000250g0130 Nicotiana tabacum HOM05D004362 ORTHO05D005650 1.1e-83 313.5 188 80.3
DCAR_003777 Daucus carota HOM05D004362 ORTHO05D005650 1.8e-83 312.8 188 79.8
HanXRQChr05g0151141 Helianthus annuus HOM05D004362 ORTHO05D005650 2.4e-83 312.4 188 79.8
Eucgr.L03020 Eucalyptus grandis HOM05D004362 ORTHO05D005650 3.1e-83 312.0 188 79.3
Nitab4.5_0002393g0040 Nicotiana tabacum HOM05D004362 ORTHO05D005650 3.1e-83 312.0 188 79.8
CDE05G0863 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 9.1e-83 310.5 188 77.7
HanXRQChr15g0467261 Helianthus annuus HOM05D004362 ORTHO05D005650 1.6e-82 309.7 188 78.7
Lsat_1_v5_gn_7_66041 Lactuca sativa HOM05D004362 ORTHO05D005650 1.6e-82 309.7 188 78.2
CDE05G1737 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 4.5e-82 308.1 188 77.1
ECA246G2248 Erigeron canadensis HOM05D004362 ORTHO05D005650 1.7e-81 306.2 188 77.7
Potri.010G024400 Populus trichocarpa HOM05D004362 ORTHO05D005650 3.8e-81 305.1 188 77.7
SEGI_37753 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 5.0e-81 304.7 188 76.6
Oeu027731.1 Olea europaea HOM05D004362 ORTHO05D005650 6.5e-81 304.3 189 78.8
Sabra10G0014700 Salix brachista HOM05D004362 ORTHO05D005650 6.5e-81 304.3 188 77.1
Potri.008G209600 Populus trichocarpa HOM05D004362 ORTHO05D005650 4.2e-80 301.6 188 77.7
HPP92_025218 Vanilla planifolia HOM05D004362 ORTHO05D005650 9.4e-80 300.4 188 75.5
SGA_v2.0_scaffold166G38354 Striga asiatica HOM05D004362 ORTHO05D005650 2.1e-79 299.3 189 79.4
CDE05G2612 Ceratophyllum demersum HOM05D004362 ORTHO05D005650 2.7e-79 298.9 180 77.2
FAN02G1421 Fragaria x ananassa HOM05D004362 ORTHO05D005650 2.3e-78 295.8 174 80.5
arahy.Tifrunner.gnm1.ann1.U4RKM8 Arachis hypogaea HOM05D004362 ORTHO05D005650 5.2e-78 294.7 169 80.5
Migut.G00171 Erythranthe guttata HOM05D004362 ORTHO05D005650 6.7e-78 294.3 189 78.3
MSTRG.3927 Avicennia marina HOM05D004362 ORTHO05D005650 1.2e-77 293.5 189 77.8
SGA_v2.0_scaffold67G22647 Striga asiatica HOM05D004362 ORTHO05D005650 1.2e-77 293.5 188 76.6
Ah.05g167830 Amaranthus hybridus HOM05D004362 ORTHO05D005650 2.0e-77 292.7 188 76.1
SHI00272 Sapria himalayana HOM05D004362 ORTHO05D005650 3.3e-77 292.0 188 75.0
unitig_88.g27714 Utricularia gibba HOM05D004362 ORTHO05D005650 5.7e-77 291.2 189 77.2
SalBow2G1272 Salvia bowleyana HOM05D004362 ORTHO05D005650 1.7e-76 289.7 189 76.7
BcaC06g33449 Brassica carinata HOM05D004362 ORTHO05D005650 1.4e-75 286.6 177 81.4
AUR62010283 Chenopodium quinoa HOM05D004362 ORTHO05D005650 3.1e-75 285.4 190 74.2
EL10Ac1g01907 Beta vulgaris HOM05D004362 ORTHO05D005650 1.2e-74 283.5 190 73.7
Lalb_Chr13g0303661 Lupinus albus HOM05D004362 ORTHO05D005650 1.6e-74 283.1 188 73.9
Sc19g0005120 Simmondsia chinensis HOM05D004362 ORTHO05D005650 8.5e-73 277.3 188 71.8
AagrBONN_evm.TU.Sc2ySwM_228.5155 Anthoceros agrestis HOM05D004362 ORTHO05D005650 7.2e-72 274.2 188 68.1
SMO361G0267 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 9.4e-72 273.9 188 71.3
SMO361G0579 Selaginella moellendorffii HOM05D004362 ORTHO05D005650 9.4e-72 273.9 188 71.3
CBR_g101 Chara braunii HOM05D004362 ORTHO05D005650 1.0e-70 270.4 189 67.2
AUR62039106 Chenopodium quinoa HOM05D004362 ORTHO05D005650 1.4e-70 270.0 179 74.3
Mapoly0063s0083 Marchantia polymorpha HOM05D004362 ORTHO05D005650 2.3e-70 269.2 188 68.1
Pp3c15_15310 Physcomitrium patens HOM05D004362 ORTHO05D005650 3.0e-70 268.9 188 68.1
EL10Ac1g01881 Beta vulgaris HOM05D004362 ORTHO05D005650 8.8e-70 267.3 179 73.2
GSVIVG01038238001 Vitis vinifera HOM05D004362 ORTHO05D005650 3.4e-69 265.4 188 72.3
Dinv44388 Davidia involucrata HOM05D004362 ORTHO05D005650 9.8e-69 263.8 188 71.8
GSVIVG01017749001 Vitis vinifera HOM05D004362 ORTHO05D005650 1.4e-67 260.0 188 71.3
Zm00001eb257450 Zea mays HOM05D004362 ORTHO05D005650 1.6e-66 256.5 187 64.7
MCO05G615 Micromonas commoda HOM05D004362 ORTHO05D005650 2.7e-66 255.8 187 65.8
Psat0s12239g0040 Pisum sativum HOM05D004362 ORTHO05D005650 2.9e-65 252.3 182 68.1
Os07g0670600 Oryza sativa ssp. japonica HOM05D004362 ORTHO05D005650 1.6e-63 246.5 187 62.6
Prupe.7G009000 Prunus persica HOM05D004362 ORTHO05D005650 4.9e-60 235.0 165 73.3
Cre12.g528900 Chlamydomonas reinhardtii HOM05D004362 ORTHO05D005650 1.4e-59 233.4 188 55.9
PRCOL_00000387 Prasinoderma coloniale HOM05D004362 ORTHO05D005650 1.4e-59 233.4 177 62.7
SEGI_14868 Sequoiadendron giganteum HOM05D004362 ORTHO05D005650 4.4e-53 211.8 188 60.1
Psat5g016440 Pisum sativum HOM05D004362 ORTHO05D005650 7.3e-48 194.5 121 75.2
Haze_26515 Corylus avellana HOM05D004362 ORTHO05D005650 4.7e-47 191.8 187 50.3
Psat7g055200 Pisum sativum HOM05D004362 ORTHO05D005650 3.2e-43 179.1 109 78.0
Oeu027660.1 Olea europaea HOM05D004362 ORTHO05D005650 3.5e-42 175.6 114 73.7
Eucgr.C01884 Eucalyptus grandis HOM05D004362 ORTHO05D191638 7.3e-40 167.9 123 71.5
Actinidia40262 Actinidia chinensis HOM05D004362 ORTHO05D005650 2.1e-39 166.4 85 92.9
FAN05G2426 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.1e-38 164.1 173 53.2
FAN14G4293 Fragaria x ananassa HOM05D004362 ORTHO05D005650 1.4e-38 163.7 188 50.0
SEGI_29823 Sequoiadendron giganteum HOM05D004362 ORTHO05D000001 1.3e-36 157.1 127 61.4
TPR.G35112 Trifolium pratense HOM05D004362 ORTHO05D005650 2.4e-30 136.3 78 82.1
BcaC02g09747 Brassica carinata HOM05D004362 ORTHO05D094801 2.6e-29 132.9 93 74.2
Psat4g036040 Pisum sativum HOM05D004362 ORTHO05D327968 1.5e-24 117.1 64 82.8
Prupe.7G008800 Prunus persica HOM05D004362 ORTHO05D334194 1.8e-09 67.0 35 88.6
EL10Ac2g03799 Beta vulgaris HOM05D004362 ORTHO05D090253 1.1e-06 57.8 39 66.7


User provided reference genes

Program Settings