Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G37650 Arabidopsis lyrata HOM05D001878 ORTHO05D001737 2.5e-154 548.9 310 100.0
AT4G17060 Arabidopsis thaliana HOM05D001878 ORTHO05D001737 3.0e-147 525.4 309 96.4
Carub.0007s2434 Capsella rubella HOM05D001878 ORTHO05D001737 3.0e-147 525.4 309 96.4
CARHR223640 Cardamine hirsuta HOM05D001878 ORTHO05D001737 2.4e-136 489.2 310 84.5
Thhalv10025276m.g Eutrema salsugineum HOM05D001878 ORTHO05D001737 5.3e-120 434.9 311 81.7
Aa31LG2G13170 Aethionema arabicum HOM05D001878 ORTHO05D001737 8.7e-115 417.5 310 81.0
BolC1t02491H Brassica oleracea HOM05D001878 ORTHO05D001737 2.1e-113 412.9 311 81.0
BraA01t01951Z Brassica rapa HOM05D001878 ORTHO05D001737 4.5e-111 405.2 311 80.7
C01p25390 Brassica napus HOM05D001887 ORTHO05D003756 3.9e-107 392.1 300 80.3
A01p20250 Brassica napus HOM05D001887 ORTHO05D003756 8.2e-105 384.4 300 80.0
BcaNung00128 Brassica carinata HOM05D001878 ORTHO05D001737 4.5e-103 378.6 309 70.9
THA.LOC104812737 Tarenaya hassleriana HOM05D001878 ORTHO05D001737 9.7e-82 307.8 304 59.2
BcaB04g18385 Brassica carinata HOM05D001878 ORTHO05D001737 5.2e-75 285.4 249 67.1
BcaB04g18388 Brassica carinata HOM05D001878 ORTHO05D001737 3.6e-68 262.7 297 58.9
BolC8t48429H Brassica oleracea HOM05D001887 ORTHO05D003756 3.6e-68 262.7 298 58.4
Aa31LG9G15110 Aethionema arabicum HOM05D001878 ORTHO05D001737 1.2e-63 247.7 307 51.5
BcaC07g38034 Brassica carinata HOM05D001878 ORTHO05D001737 7.5e-50 201.8 260 55.8
BraA08t33268Z Brassica rapa HOM05D001878 ORTHO05D001737 5.6e-21 105.9 131 51.1
Sabra01G0120400 Salix brachista HOM05D001878 ORTHO05D001737 6.9e-19 99.0 178 44.9
COL.COLO4_06677 Corchorus olitorius HOM05D001878 ORTHO05D001737 3.2e-16 90.1 178 37.6
TWI15G0283 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 5.4e-16 89.4 186 39.8
TWI15G0285 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 5.4e-16 89.4 186 39.8
Gohir.A08G162900 Gossypium hirsutum HOM05D001878 ORTHO05D001737 2.1e-15 87.4 195 36.9
Potri.003G083800 Populus trichocarpa HOM05D001878 ORTHO05D001737 4.6e-15 86.3 316 30.7
Gorai.008G230600 Gossypium raimondii HOM05D001878 ORTHO05D001737 7.8e-15 85.5 196 39.8
Sabra03G0054300 Salix brachista HOM05D001878 ORTHO05D001737 3.9e-14 83.2 300 32.0
Gohir.D12G215000 Gossypium hirsutum HOM05D001878 ORTHO05D001737 5.1e-14 82.8 196 39.8
Potri.001G150600 Populus trichocarpa HOM05D001878 ORTHO05D001737 8.7e-14 82.0 188 38.8
Thecc.03G239800 Theobroma cacao HOM05D001878 ORTHO05D001737 8.7e-14 82.0 173 38.7
Duzib068G1299 Durio zibethinus HOM05D001878 ORTHO05D001737 1.1e-13 81.6 175 36.6
Gohir.A12G212500 Gossypium hirsutum HOM05D001878 ORTHO05D001737 2.5e-13 80.5 203 37.4
TWI60G1396 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 3.3e-13 80.1 205 36.1
CAN.G756.42 Capsicum annuum HOM05D001878 ORTHO05D001737 9.6e-13 78.6 73 53.4
MD02G1219900 Malus domestica HOM05D001878 ORTHO05D001737 3.6e-12 76.6 75 56.0
Manes.02G045500 Manihot esculenta HOM05D001878 ORTHO05D001737 3.6e-12 76.6 210 35.7
FvH4_7g09240 Fragaria vesca HOM05D001878 ORTHO05D001737 2.4e-11 73.9 136 38.2
Prupe.2G121200 Prunus persica HOM05D001878 ORTHO05D001737 2.4e-11 73.9 76 53.9
FAN03G2199 Fragaria x ananassa HOM05D001878 ORTHO05D001737 4.0e-11 73.2 134 38.1
Ciclev10024664m.g Citrus clementina HOM05D001878 ORTHO05D001737 5.3e-11 72.8 284 30.6
FAN06G0367 Fragaria x ananassa HOM05D001878 ORTHO05D001737 5.3e-11 72.8 136 38.2
MELO3C006287.2 Cucumis melo HOM05D001878 ORTHO05D001737 6.9e-11 72.4 76 52.6
CsaV3_3G010680 Cucumis sativus L. HOM05D001878 ORTHO05D001737 6.9e-11 72.4 76 52.6
FAN10G3306 Fragaria x ananassa HOM05D001878 ORTHO05D001737 6.9e-11 72.4 134 37.3
Gohir.A08G139800 Gossypium hirsutum HOM05D001878 ORTHO05D001737 6.9e-11 72.4 77 51.9
Gohir.D08G160800 Gossypium hirsutum HOM05D001878 ORTHO05D001737 6.9e-11 72.4 76 52.6
Ca_21569_v3 Cicer arietinum L. HOM05D001878 ORTHO05D001737 9.0e-11 72.0 79 49.4
FAN10G3061 Fragaria x ananassa HOM05D001878 ORTHO05D001737 9.0e-11 72.0 134 37.3
PGSC0003DMG400001696 Solanum tuberosum HOM05D001878 ORTHO05D001737 9.0e-11 72.0 73 53.4
SalBow4G2533 Salvia bowleyana HOM05D001878 ORTHO05D001737 1.2e-10 71.6 80 52.5
Sp4g26780 Schrenkiella parvula HOM05D001878 ORTHO05D001737 1.2e-10 71.6 86 50.0
Duzib205G1889 Durio zibethinus HOM05D001878 ORTHO05D001737 1.5e-10 71.2 176 36.9
Sabra02G0150600 Salix brachista HOM05D001878 ORTHO05D001737 2.0e-10 70.9 103 42.7
Gorai.004G167100 Gossypium raimondii HOM05D001878 ORTHO05D001737 2.6e-10 70.5 104 43.3
Sed0011776 Sechium edule HOM05D001878 ORTHO05D001737 2.6e-10 70.5 74 51.4
CSS0013278 Camellia sinensis var. sinensis HOM05D001878 ORTHO05D001737 3.4e-10 70.1 112 41.1
QL04p028592 Quercus lobata HOM05D001878 ORTHO05D001737 3.4e-10 70.1 125 45.6
QL04p028713 Quercus lobata HOM05D001878 ORTHO05D001737 3.4e-10 70.1 125 45.6
Rhsim07G0136200 Rhododendron simsii HOM05D001878 ORTHO05D001737 3.4e-10 70.1 110 44.5
FAN05G2379 Fragaria x ananassa HOM05D001878 ORTHO05D001737 4.5e-10 69.7 128 38.3
MD06G1046900 Malus domestica HOM05D001878 ORTHO05D001737 4.5e-10 69.7 175 34.3
MD04G1055300 Malus domestica HOM05D001878 ORTHO05D001737 5.8e-10 69.3 175 34.3
MD07G1097000 Malus domestica HOM05D001878 ORTHO05D001737 7.6e-10 68.9 119 37.8
MD07G1097300 Malus domestica HOM05D001878 ORTHO05D001737 7.6e-10 68.9 119 37.8
Atru.chr5.102 Acer truncatum HOM05D001878 ORTHO05D001737 9.9e-10 68.6 74 52.7
Lalb_Chr12g0210451 Lupinus albus HOM05D001878 ORTHO05D001737 9.9e-10 68.6 127 40.2
BcaC01g05200 Brassica carinata HOM05D001878 ORTHO05D001737 2.2e-09 67.4 74 51.4
PSO782G1295 Papaver somniferum HOM05D001878 ORTHO05D001737 2.2e-09 67.4 150 35.3
BcaC01g05199 Brassica carinata HOM05D001878 ORTHO05D001737 3.8e-09 66.6 74 50.0
CANSAT25G3641 Cannabis sativa HOM05D001878 ORTHO05D001737 3.8e-09 66.6 72 51.4
Psat4g031080 Pisum sativum HOM05D001878 ORTHO05D001737 3.8e-09 66.6 71 49.3
Potri.002G139500 Populus trichocarpa HOM05D001878 ORTHO05D001737 3.8e-09 66.6 125 37.6
Atru.chr9.1204 Acer truncatum HOM05D001878 ORTHO05D001737 4.9e-09 66.2 149 36.2
CiPaw.13G024400 Carya illinoinensis HOM05D001878 ORTHO05D001737 4.9e-09 66.2 73 50.7
Peaxi162Scf00853g00433 Petunia axillaris HOM05D001878 ORTHO05D001737 4.9e-09 66.2 112 42.9
Sed0021214 Sechium edule HOM05D001878 ORTHO05D001737 4.9e-09 66.2 65 53.8
PGR031G2290 Punica granatum HOM05D001878 ORTHO05D001737 6.4e-09 65.9 192 31.8
SHI13627 Sapria himalayana HOM05D001878 ORTHO05D001737 6.4e-09 65.9 102 40.2
TAR629G0579 Trochodendron aralioides HOM05D001878 ORTHO05D001737 6.4e-09 65.9 176 34.7
A03p24870 Brassica napus HOM05D001878 ORTHO05D001737 8.4e-09 65.5 74 51.4
BraA03t11694Z Brassica rapa HOM05D001878 ORTHO05D001737 8.4e-09 65.5 74 51.4
Glyma.18G248000 Glycine max HOM05D001878 ORTHO05D001737 8.4e-09 65.5 120 38.3
C03p29660 Brassica napus HOM05D001878 ORTHO05D001737 1.1e-08 65.1 74 50.0
BolC3t15314H Brassica oleracea HOM05D001878 ORTHO05D001737 1.1e-08 65.1 74 50.0
COL.COLO4_18392 Corchorus olitorius HOM05D001878 ORTHO05D001737 1.1e-08 65.1 76 47.4
DCAR_008328 Daucus carota HOM05D001878 ORTHO05D001737 1.1e-08 65.1 180 31.7
CiPaw.14G018500 Carya illinoinensis HOM05D001878 ORTHO05D001737 1.4e-08 64.7 114 40.4
Solyc01g088820.2 Solanum lycopersicum HOM05D001878 ORTHO05D001737 1.4e-08 64.7 73 47.9
BcaC01g05201 Brassica carinata HOM05D001878 ORTHO05D001737 1.9e-08 64.3 74 50.0
Cc08_g11310 Coffea canephora HOM05D001878 ORTHO05D001737 1.9e-08 64.3 177 34.5
Duzib268G0102 Durio zibethinus HOM05D001878 ORTHO05D001737 1.9e-08 64.3 123 39.8
FAN01G1421 Fragaria x ananassa HOM05D001878 ORTHO05D001737 1.9e-08 64.3 132 37.1
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 2.4e-08 63.9 164 36.0
Prupe.5G055100 Prunus persica HOM05D001878 ORTHO05D001737 2.4e-08 63.9 174 31.0
AT2G44730 Arabidopsis thaliana HOM05D001878 ORTHO05D001737 3.2e-08 63.5 91 41.8
Aa31LG1G26270 Aethionema arabicum HOM05D001878 ORTHO05D001737 4.2e-08 63.2 110 35.5
Lalb_Chr07g0195291 Lupinus albus HOM05D001878 ORTHO05D001737 4.2e-08 63.2 90 38.9
Sopen01g035660 Solanum pennellii HOM05D001878 ORTHO05D001737 4.2e-08 63.2 73 46.6
Cfa011046 Carpinus fangiana HOM05D001878 ORTHO05D001737 5.4e-08 62.8 74 51.4
Haze_02877 Corylus avellana HOM05D001878 ORTHO05D001737 5.4e-08 62.8 74 51.4
Thhalv10001488m.g Eutrema salsugineum HOM05D001878 ORTHO05D001737 5.4e-08 62.8 74 48.6
Glyma.07G254502 Glycine max HOM05D001878 ORTHO05D001737 5.4e-08 62.8 73 49.3
HanXRQChr01g0016011 Helianthus annuus HOM05D001878 ORTHO05D001737 5.4e-08 62.8 67 47.8
Nn1g05420 Nelumbo nucifera HOM05D001878 ORTHO05D001737 5.4e-08 62.8 107 46.7
PSO063G3234 Papaver somniferum HOM05D001878 ORTHO05D001737 5.4e-08 62.8 153 34.0
DCAR_029489 Daucus carota HOM05D001878 ORTHO05D001737 7.1e-08 62.4 119 40.3
Hma1.2p1_0632F.1_g192450 Hydrangea macrophylla HOM05D001878 ORTHO05D001737 7.1e-08 62.4 156 38.5
RcHm_v2.0_Chr7g0205761 Rosa chinensis HOM05D001878 ORTHO05D001737 9.3e-08 62.0 125 36.0
VMungo1383G0933 Vigna mungo HOM05D001878 ORTHO05D001737 9.3e-08 62.0 156 35.9
Lalb_Chr07g0177461 Lupinus albus HOM05D001878 ORTHO05D001737 1.2e-07 61.6 63 52.4
Phvul.008G049300 Phaseolus vulgaris HOM05D001878 ORTHO05D001737 1.2e-07 61.6 154 34.4
vmacro21925 Vaccinium macrocarpon HOM05D001878 ORTHO05D001737 1.2e-07 61.6 159 36.5
AL4G43780 Arabidopsis lyrata HOM05D001878 ORTHO05D001737 1.6e-07 61.2 76 47.4
Rhsim01G0141600 Rhododendron simsii HOM05D001878 ORTHO05D001737 1.6e-07 61.2 73 43.8
TPR.G28130 Trifolium pratense HOM05D001878 ORTHO05D001737 1.6e-07 61.2 65 52.3
Lsat_1_v5_gn_1_84200 Lactuca sativa HOM05D001878 ORTHO05D001737 2.1e-07 60.8 110 34.5
Medtr7g081190 Medicago truncatula HOM05D001878 ORTHO05D001737 2.1e-07 60.8 71 49.3
Oeu026349.1 Olea europaea HOM05D001878 ORTHO05D001737 2.1e-07 60.8 110 38.2
TWI14G1354 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 2.1e-07 60.8 75 45.3
BraA05t19461Z Brassica rapa HOM05D001878 ORTHO05D001737 2.7e-07 60.5 111 37.8
Thecc.01G400100 Theobroma cacao HOM05D001878 ORTHO05D001737 2.7e-07 60.5 79 45.6
BolC4t22199H Brassica oleracea HOM05D001878 ORTHO05D001737 3.5e-07 60.1 74 48.6
Duzib133G0474 Durio zibethinus HOM05D001878 ORTHO05D001737 3.5e-07 60.1 76 46.1
Oeu019262.1 Olea europaea HOM05D001878 ORTHO05D001737 3.5e-07 60.1 98 37.8
A05p04860 Brassica napus HOM05D001878 ORTHO05D001737 4.6e-07 59.7 111 37.8
Psat3g099720 Pisum sativum HOM05D001878 ORTHO05D001737 4.6e-07 59.7 68 51.5
Nn1g00752 Nelumbo nucifera HOM05D001878 ORTHO05D001737 6.0e-07 59.3 67 47.8
HanXRQChr03g0089721 Helianthus annuus HOM05D001878 ORTHO05D001737 7.9e-07 58.9 67 46.3
Medtr4g117990 Medicago truncatula HOM05D001878 ORTHO05D001737 7.9e-07 58.9 70 48.6
Oeu037430.1 Olea europaea HOM05D001878 ORTHO05D001737 7.9e-07 58.9 181 32.6
ATR0684G037 Amborella trichopoda HOM05D001878 ORTHO05D001737 1.0e-06 58.5 70 42.9
Ciclev10020863m.g Citrus clementina HOM05D001878 ORTHO05D001737 1.0e-06 58.5 75 45.3
Lsat_1_v5_gn_1_84280 Lactuca sativa HOM05D001878 ORTHO05D001737 1.0e-06 58.5 111 34.2
Lsat_1_v5_gn_3_15221 Lactuca sativa HOM05D001878 ORTHO05D001737 1.0e-06 58.5 94 38.3
Lj1g0024989 Lotus japonicus HOM05D001878 ORTHO05D001737 1.0e-06 58.5 131 35.1
BcaC02g12281 Brassica carinata HOM05D001878 ORTHO05D001737 1.3e-06 58.2 72 48.6
C04p05690 Brassica napus HOM05D001878 ORTHO05D001737 1.3e-06 58.2 72 48.6
Glyma.09G245300 Glycine max HOM05D001878 ORTHO05D001737 1.3e-06 58.2 170 31.8
Eucgr.E01658 Eucalyptus grandis HOM05D001878 ORTHO05D001737 1.8e-06 57.8 74 44.6
Manes.05G056800 Manihot esculenta HOM05D001878 ORTHO05D001737 1.8e-06 57.8 153 33.3
Ah.12g053970 Amaranthus hybridus HOM05D001878 ORTHO05D001737 2.3e-06 57.4 68 50.0
ECA246G4246 Erigeron canadensis HOM05D001878 ORTHO05D001737 2.3e-06 57.4 156 32.7
ECA248G2444 Erigeron canadensis HOM05D001878 ORTHO05D001737 2.3e-06 57.4 100 39.0
CARHR139940 Cardamine hirsuta HOM05D001878 ORTHO05D001737 3.0e-06 57.0 159 31.4
Oeu060056.1 Olea europaea HOM05D001878 ORTHO05D001737 3.9e-06 56.6 189 31.2
Lalb_Chr13g0290701 Lupinus albus HOM05D001878 ORTHO05D001737 5.1e-06 56.2 184 31.5
Ah.08g213030 Amaranthus hybridus HOM05D001878 ORTHO05D001737 6.7e-06 55.8 128 32.8
Potri.014G051200 Populus trichocarpa HOM05D001878 ORTHO05D001737 6.7e-06 55.8 189 30.7
Glyma.08G051800 Glycine max HOM05D001878 ORTHO05D001737 8.7e-06 55.5 132 37.1
Lsat_1_v5_gn_3_15241 Lactuca sativa HOM05D001878 ORTHO05D001737 8.7e-06 55.5 212 26.9


User provided reference genes

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