Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.9e-89 332.8 212 100.0
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 7.1e-84 314.3 214 94.4
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 1.0e-82 310.5 212 94.8
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 2.4e-76 289.3 212 90.1
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 1.8e-74 283.1 212 88.2
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 1.1e-68 263.8 212 84.0
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 2.5e-65 252.7 212 71.7
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 3.3e-65 252.3 210 79.0
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 4.3e-65 251.9 210 78.6
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.3e-64 250.4 212 79.2
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 8.2e-64 247.7 210 78.6
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 1.8e-63 246.5 210 78.6
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 1.3e-58 230.3 212 68.9
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 2.5e-57 226.1 212 65.6
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 2.6e-54 216.1 216 61.6
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 2.6e-54 216.1 216 63.4
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 1.9e-52 209.9 127 81.9
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.5e-52 209.5 127 82.7
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 4.2e-52 208.8 229 56.8
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 4.2e-52 208.8 229 56.8
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 2.7e-51 206.1 127 81.9
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 3.6e-51 205.7 217 60.4
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.0e-50 204.1 126 81.7
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 1.0e-50 204.1 226 57.5
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.4e-50 203.8 124 83.1
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 1.8e-50 203.4 213 59.2
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.3e-50 203.0 126 81.7
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 8.8e-50 201.1 216 58.3
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 1.5e-49 200.3 212 58.0
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.0e-49 199.9 212 57.1
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 2.5e-49 199.5 222 59.5
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 2.5e-49 199.5 196 60.7
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 2.5e-49 199.5 196 60.7
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 2.5e-49 199.5 212 59.9
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 7.4e-49 198.0 126 79.4
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 9.7e-49 197.6 212 68.9
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 9.7e-49 197.6 226 54.9
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 9.7e-49 197.6 216 56.0
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 9.7e-49 197.6 220 60.0
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 9.7e-49 197.6 222 59.9
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 1.3e-48 197.2 126 79.4
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.7e-48 196.8 127 78.7
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 2.8e-48 196.1 218 58.7
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 3.7e-48 195.7 218 58.7
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 4.8e-48 195.3 214 60.7
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 6.3e-48 194.9 215 57.7
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.1e-47 194.1 219 58.9
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 1.1e-47 194.1 216 60.2
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 1.8e-47 193.4 217 58.5
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 2.4e-47 193.0 212 58.5
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 3.1e-47 192.6 218 54.6
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 3.1e-47 192.6 228 55.7
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 4.1e-47 192.2 127 74.8
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 4.1e-47 192.2 127 74.8
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 5.3e-47 191.8 127 77.2
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 6.9e-47 191.4 221 56.6
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 6.9e-47 191.4 217 56.2
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 9.1e-47 191.0 125 77.6
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 9.1e-47 191.0 220 57.3
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.2e-46 190.7 127 76.4
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.5e-46 190.3 213 58.2
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 2.0e-46 189.9 127 74.0
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 2.6e-46 189.5 215 54.9
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 3.4e-46 189.1 215 56.3
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 4.5e-46 188.7 212 62.7
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 5.9e-46 188.3 222 58.6
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 5.9e-46 188.3 122 76.2
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 5.9e-46 188.3 212 57.1
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 5.9e-46 188.3 212 57.1
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 5.9e-46 188.3 127 74.8
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 7.7e-46 188.0 222 57.7
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 7.7e-46 188.0 222 58.1
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 7.7e-46 188.0 127 74.0
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 7.7e-46 188.0 127 74.0
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 7.7e-46 188.0 126 75.4
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 1.0e-45 187.6 127 75.6
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 1.0e-45 187.6 212 59.0
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 1.0e-45 187.6 127 74.0
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 1.3e-45 187.2 126 74.6
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 1.7e-45 186.8 127 74.8
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 1.7e-45 186.8 127 74.0
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.7e-45 186.8 127 74.0
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 1.7e-45 186.8 128 74.2
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 2.2e-45 186.4 127 74.0
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 2.2e-45 186.4 127 74.0
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.2e-45 186.4 126 73.8
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 2.2e-45 186.4 216 57.9
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 3.8e-45 185.7 127 74.8
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 8.5e-45 184.5 216 56.5
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 8.5e-45 184.5 212 55.2
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 1.1e-44 184.1 127 74.0
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 1.1e-44 184.1 120 75.8
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 1.4e-44 183.7 131 73.3
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 1.9e-44 183.3 127 74.0
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 2.5e-44 183.0 127 73.2
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 3.2e-44 182.6 126 75.4
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 4.2e-44 182.2 212 57.1
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 7.2e-44 181.4 126 74.6
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 9.4e-44 181.0 127 73.2
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 1.2e-43 180.6 162 61.7
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 1.2e-43 180.6 127 72.4
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 2.7e-43 179.5 215 53.5
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 7.9e-43 177.9 213 55.4
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 1.0e-42 177.6 212 53.8
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 1.4e-42 177.2 218 56.0
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 3.9e-42 175.6 174 60.3
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 6.7e-42 174.9 124 71.8
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 6.7e-42 174.9 240 47.5
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 8.8e-42 174.5 223 56.5
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 1.5e-41 173.7 200 57.0
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 2.0e-41 173.3 124 71.0
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.3e-40 170.6 215 53.5
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 2.4e-39 166.4 217 62.7
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 3.1e-39 166.0 218 48.6
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 4.1e-39 165.6 212 54.2
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 4.1e-39 165.6 106 79.2
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 5.3e-39 165.2 222 51.4
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 1.6e-38 163.7 197 53.8
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 3.5e-38 162.5 134 62.7
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 5.9e-38 161.8 105 79.0
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 7.7e-38 161.4 129 68.2
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 7.7e-38 161.4 111 73.9
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 2.5e-36 156.4 125 61.6
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 6.1e-35 151.8 95 77.9
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 1.8e-34 150.2 131 63.4
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 1.8e-34 150.2 125 58.4
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 1.1e-33 147.5 209 51.7
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 2.6e-33 146.4 216 48.1
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 9.7e-33 144.4 182 52.2
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 4.5e-30 135.6 123 61.0
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.0e-29 134.4 109 67.0
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 1.3e-29 134.0 107 63.6
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 2.9e-29 132.9 101 69.3
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 3.8e-29 132.5 84 78.6
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 9.4e-28 127.9 108 62.0
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 8.0e-27 124.8 98 64.3
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.0e-26 124.4 186 51.1
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 5.2e-26 122.1 212 41.0
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 7.5e-25 118.2 84 71.4
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 9.8e-25 117.9 103 56.3
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 2.2e-24 116.7 197 53.3
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 3.7e-24 115.9 77 72.7
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 9.1e-23 111.3 180 46.1
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 6.5e-21 105.1 79 69.6
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 1.0e-18 97.8 169 43.8
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.8e-16 89.7 82 57.3
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 4.1e-15 85.9 48 85.4
BcaB03g11665 Brassica carinata HOM05D004341 ORTHO05D005075 2.0e-14 83.6 107 71.0
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 2.7e-14 83.2 65 66.2
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 5.9e-14 82.0 74 55.4
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 2.9e-13 79.7 153 45.1
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 5.0e-13 79.0 148 45.3
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 6.6e-13 78.6 115 39.1
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 4.3e-12 75.9 113 41.6
BcaB08g34314 Brassica carinata HOM05D004341 ORTHO05D005075 2.1e-11 73.6 108 68.5
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 3.0e-10 69.7 46 80.4
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 1.5e-09 67.4 153 41.8
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 2.6e-09 66.6 41 70.7
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 2.9e-08 63.2 37 75.7
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 3.2e-07 59.7 94 43.6


User provided reference genes

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