Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G33600 Arabidopsis lyrata HOM05D006967 ORTHO05D008692 4.4e-297 1023.8 510 100.0
Carub.0007s2087 Capsella rubella HOM05D006967 ORTHO05D008692 3.4e-257 891.3 514 86.6
Sp7g18650 Schrenkiella parvula HOM05D006967 ORTHO05D008692 1.5e-244 849.4 526 82.1
Thhalv10024898m.g Eutrema salsugineum HOM05D006967 ORTHO05D008692 6.2e-243 844.0 530 81.5
A01p12010 Brassica napus HOM05D006967 ORTHO05D008692 2.6e-241 838.6 524 80.5
BolC1t01391H Brassica oleracea HOM05D006967 ORTHO05D008692 3.4e-241 838.2 524 80.5
C01p14260 Brassica napus HOM05D006967 ORTHO05D008692 5.8e-241 837.4 524 80.7
BcaC09g51322 Brassica carinata HOM05D006967 ORTHO05D008692 1.7e-240 835.9 524 80.7
BraA01t01143Z Brassica rapa HOM05D006967 ORTHO05D008692 3.8e-240 834.7 524 80.5
BcaNung03720 Brassica carinata HOM05D006967 ORTHO05D008692 1.4e-239 832.8 524 80.5
BcaNung03721 Brassica carinata HOM05D006967 ORTHO05D008692 3.4e-225 785.0 521 77.4
AT4G20310 Arabidopsis thaliana HOM05D006967 ORTHO05D008692 3.2e-207 725.3 375 94.1
Aa31LG6G2720 Aethionema arabicum HOM05D006967 ORTHO05D008692 5.5e-199 698.0 536 67.7
THA.LOC104806234 Tarenaya hassleriana HOM05D006967 ORTHO05D008692 9.1e-194 680.6 547 66.7
CARHR227130 Cardamine hirsuta HOM05D006967 ORTHO05D008692 8.8e-173 610.9 381 80.3
CiPaw.09G141400 Carya illinoinensis HOM05D006967 ORTHO05D008692 2.3e-144 516.5 546 50.4
Thecc.05G313500 Theobroma cacao HOM05D006967 ORTHO05D008692 7.3e-143 511.5 498 53.8
Haze_05177 Corylus avellana HOM05D006967 ORTHO05D008692 2.8e-142 509.6 559 49.2
Manes.18G124500 Manihot esculenta HOM05D006967 ORTHO05D008692 8.9e-141 504.6 510 52.0
RcHm_v2.0_Chr5g0022471 Rosa chinensis HOM05D006967 ORTHO05D008692 1.2e-137 494.2 524 50.4
Potri.003G157800 Populus trichocarpa HOM05D006967 ORTHO05D008692 2.7e-137 493.0 511 50.7
FvH4_3g13520 Fragaria vesca HOM05D006967 ORTHO05D008692 6.6e-136 488.4 497 51.5
FAN11G3906 Fragaria x ananassa HOM05D006967 ORTHO05D008692 2.4e-133 479.9 494 51.2
TWI63G0275 Tripterygium wilfordii HOM05D006967 ORTHO05D008692 8.9e-133 478.0 511 49.1
Gohir.A13G109700 Gossypium hirsutum HOM05D006967 ORTHO05D008692 2.6e-132 476.5 500 52.0
Duzib177G0925 Durio zibethinus HOM05D006967 ORTHO05D008692 8.4e-131 471.5 499 50.9
FAN25G2282 Fragaria x ananassa HOM05D006967 ORTHO05D008692 1.1e-130 471.1 496 50.6
Gorai.013G126100 Gossypium raimondii HOM05D006967 ORTHO05D008692 1.6e-129 467.2 499 51.3
CANSAT35G1213 Cannabis sativa HOM05D006967 ORTHO05D008692 6.0e-129 465.3 520 48.3
FAN21G4071 Fragaria x ananassa HOM05D006967 ORTHO05D008692 8.7e-128 461.5 508 49.0
MD10G1221200 Malus domestica HOM05D006967 ORTHO05D008692 1.5e-127 460.7 534 47.4
PSO675G8399 Papaver somniferum HOM05D006967 ORTHO05D008692 7.6e-124 448.4 543 45.5
Sopen01g015960 Solanum pennellii HOM05D006967 ORTHO05D008692 1.7e-123 447.2 535 46.5
CAN.G40.7 Capsicum annuum HOM05D006967 ORTHO05D008692 1.4e-122 444.1 535 46.5
Glyma.16G096000 Glycine max HOM05D006967 ORTHO05D008692 1.6e-121 440.7 542 45.8
PSO541G0117 Papaver somniferum HOM05D006967 ORTHO05D008692 2.1e-121 440.3 533 45.4
Gohir.D13G112300 Gossypium hirsutum HOM05D006967 ORTHO05D008692 2.7e-121 439.9 474 51.5
CSS0034338 Camellia sinensis var. sinensis HOM05D006967 ORTHO05D008692 1.7e-120 437.2 426 53.3
Lalb_Chr09g0334571 Lupinus albus HOM05D006967 ORTHO05D008692 3.0e-120 436.4 546 45.2
Eucgr.E04333 Eucalyptus grandis HOM05D006967 ORTHO05D008692 3.9e-120 436.0 511 47.4
Phvul.003G274600 Phaseolus vulgaris HOM05D006967 ORTHO05D008692 5.1e-120 435.6 543 44.8
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 6.6e-120 435.3 527 45.4
QL11p010599 Quercus lobata HOM05D006967 ORTHO05D008692 1.1e-119 434.5 537 44.9
Cc09_g04480 Coffea canephora HOM05D006967 ORTHO05D008692 3.3e-119 433.0 569 43.1
Medtr8g070630 Medicago truncatula HOM05D006967 ORTHO05D008692 6.2e-118 428.7 515 45.2
Sed0023777 Sechium edule HOM05D006967 ORTHO05D008692 1.4e-117 427.6 507 47.7
Aqoxy1G01340 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 1.8e-117 427.2 514 44.4
Lj4g0002657 Lotus japonicus HOM05D006967 ORTHO05D008692 4.5e-116 422.5 546 44.3
vmacro03578 Vaccinium macrocarpon HOM05D006967 ORTHO05D008692 9.3e-114 414.8 588 41.7
HanXRQChr14g0439851 Helianthus annuus HOM05D006967 ORTHO05D008692 1.6e-113 414.1 512 43.6
arahy.Tifrunner.gnm1.ann1.B3JMJ8 Arachis hypogaea HOM05D006967 ORTHO05D008692 7.9e-113 411.8 599 41.1
FAN16G1037 Fragaria x ananassa HOM05D006967 ORTHO05D008692 7.9e-113 411.8 448 49.3
TPR.G19829 Trifolium pratense HOM05D006967 ORTHO05D008692 2.5e-111 406.8 541 42.9
SHI28117 Sapria himalayana HOM05D006967 ORTHO05D008692 7.4e-111 405.2 517 44.1
ECA238G0649 Erigeron canadensis HOM05D006967 ORTHO05D008692 9.6e-111 404.8 504 44.2
CsaV3_5G000140 Cucumis sativus L. HOM05D006967 ORTHO05D008692 1.6e-110 404.1 505 44.4
Migut.M02039 Erythranthe guttata HOM05D006967 ORTHO05D008692 2.1e-110 403.7 494 46.0
Oeu008739.3 Olea europaea HOM05D006967 ORTHO05D008692 6.2e-110 402.1 473 48.0
MBI10_g30431_MAGBIO Magnolia biondii HOM05D006967 ORTHO05D008692 5.3e-109 399.1 434 48.6
Migut.K01517 Erythranthe guttata HOM05D006967 ORTHO05D008692 6.9e-109 398.7 494 45.7
MSTRG.24877 Avicennia marina HOM05D006967 ORTHO05D008692 3.4e-108 396.4 507 43.4
Cpa.g.sc30.57 Carica papaya HOM05D006967 ORTHO05D008692 9.9e-108 394.8 463 49.2
MELO3C005917.2 Cucumis melo HOM05D006967 ORTHO05D008692 9.9e-108 394.8 507 44.0
Prupe.4G123400 Prunus persica HOM05D006967 ORTHO05D008692 1.9e-106 390.6 391 52.9
Sabra03G0114400 Salix brachista HOM05D006967 ORTHO05D008692 5.5e-106 389.0 492 44.5
Nn7g38428 Nelumbo nucifera HOM05D006967 ORTHO05D008692 7.4e-103 378.6 395 50.4
EL10Ac5g10560 Beta vulgaris HOM05D006967 ORTHO05D008692 6.2e-102 375.6 605 38.2
Sopen01g019010 Solanum pennellii HOM05D006967 ORTHO05D008692 1.1e-101 374.8 691 35.6
Solyc01g049910.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 6.5e-99 365.5 476 44.5
COL.COLO4_10527 Corchorus olitorius HOM05D001999 ORTHO05D001994 1.9e-98 364.0 433 45.3
Hund09497 Selenicereus undatus HOM05D006967 ORTHO05D008692 4.2e-98 362.8 562 38.1
ClCG01G000040 Citrullus lanatus HOM05D006967 ORTHO05D008692 5.5e-98 362.5 456 44.7
Nitab4.5_0000217g0010 Nicotiana tabacum HOM05D006967 ORTHO05D008692 6.0e-97 359.0 428 48.1
Peaxi162Scf00715g00310 Petunia axillaris HOM05D006967 ORTHO05D008692 6.0e-97 359.0 468 43.6
Dinv05283 Davidia involucrata HOM05D006967 ORTHO05D008692 1.1e-95 354.8 413 44.8
HPP92_009939 Vanilla planifolia HOM05D006967 ORTHO05D008692 2.2e-94 350.5 505 40.0
Migut.G00899 Erythranthe guttata HOM05D006967 ORTHO05D008692 3.7e-94 349.7 413 47.0
Lj2A340G21 Lonicera japonica HOM05D006967 ORTHO05D008692 2.4e-93 347.1 423 44.4
arahy.Tifrunner.gnm1.ann1.S5Z5QJ Arachis hypogaea HOM05D006967 ORTHO05D008692 1.5e-92 344.4 561 39.0
Rhsim13G0136900 Rhododendron simsii HOM05D006967 ORTHO05D008692 2.9e-91 340.1 364 48.6
arahy.Tifrunner.gnm1.ann1.IV6A0X Arachis hypogaea HOM05D006967 ORTHO05D008692 4.2e-90 336.3 551 38.1
Ciclev10015668m.g Citrus clementina HOM05D006967 ORTHO05D008692 1.2e-89 334.7 371 49.6
SGA_v2.0_scaffold62G21391 Striga asiatica HOM05D006967 ORTHO05D008692 1.2e-89 334.7 496 41.7
Solyc01g020520.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 4.6e-89 332.8 392 45.9
AUR62032339 Chenopodium quinoa HOM05D006967 ORTHO05D008692 1.4e-88 331.3 392 45.9
SEGI_11534 Sequoiadendron giganteum HOM05D006967 ORTHO05D008692 2.3e-88 330.5 526 37.5
ATR0737G179 Amborella trichopoda HOM05D006967 ORTHO05D008692 1.9e-87 327.4 432 43.5
Nitab4.5_0001253g0030 Nicotiana tabacum HOM05D006967 ORTHO05D008692 2.5e-87 327.0 398 46.7
AUR62028614 Chenopodium quinoa HOM05D006967 ORTHO05D008692 6.7e-80 302.4 441 40.1
VMungo0251G0412 Vigna mungo HOM05D006967 ORTHO05D008692 6.7e-80 302.4 391 44.5
Sc05g0001460 Simmondsia chinensis HOM05D006967 ORTHO05D008692 6.3e-78 295.8 379 41.2
Ah.11g050600 Amaranthus hybridus HOM05D006967 ORTHO05D008692 2.8e-70 270.4 375 40.8
TAR624G1073 Trochodendron aralioides HOM05D006967 ORTHO05D008692 3.8e-67 260.0 281 49.1
PGSC0003DMG402016926 Solanum tuberosum HOM05D006967 ORTHO05D008692 4.4e-63 246.5 308 43.8
Os01g0654200 Oryza sativa ssp. japonica HOM05D006967 ORTHO05D008692 5.2e-56 223.0 332 38.6
AagrBONN_evm.TU.Sc2ySwM_368.2736 Anthoceros agrestis HOM05D006967 ORTHO05D008692 3.5e-52 210.3 502 30.1
TAR624G0936 Trochodendron aralioides HOM05D006967 ORTHO05D008692 1.0e-51 208.8 216 50.9
Psat4g112640 Pisum sativum HOM05D006967 ORTHO05D008692 7.2e-50 202.6 233 49.8
Zm00001eb158090 Zea mays HOM05D006967 ORTHO05D008692 6.1e-49 199.5 510 27.5
Potri.001G073200 Populus trichocarpa HOM05D006967 ORTHO05D008692 6.6e-35 152.9 222 37.8
Ca_22538_v3 Cicer arietinum L. HOM05D006967 ORTHO05D008692 1.2e-33 148.7 275 38.2
SMO176G0004 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 6.4e-30 136.3 382 28.5
CAN.G40.9 Capsicum annuum HOM05D006967 ORTHO05D008692 2.7e-28 131.0 200 38.0
CBR_g19989 Chara braunii HOM05D006967 ORTHO05D008692 6.0e-28 129.8 248 31.0
CBR_g19993 Chara braunii HOM05D006967 ORTHO05D008692 1.2e-25 122.1 208 32.2
SMO365G0010 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 2.0e-15 88.2 156 38.5
HPP92_007230 Vanilla planifolia HOM05D006967 ORTHO05D008692 9.2e-13 79.3 169 32.5
Psat4g112600 Pisum sativum HOM05D006967 ORTHO05D008692 2.1e-09 68.2 146 32.9
AUR62032338 Chenopodium quinoa HOM05D006967 ORTHO05D008692 1.8e-08 65.1 109 33.9
AUR62028613 Chenopodium quinoa HOM05D006967 ORTHO05D008692 2.4e-08 64.7 115 33.0
Migut.D00002 Erythranthe guttata HOM05D006967 ORTHO05D008692 1.2e-07 62.4 52 53.8


User provided reference genes

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