Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 5.1e-134 481.1 246 100.0
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 8.4e-113 410.6 252 85.7
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 7.4e-109 397.5 249 83.9
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 7.9e-103 377.5 254 79.1
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 1.5e-98 363.2 253 74.3
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 1.7e-97 359.8 246 74.8
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 8.5e-97 357.5 256 72.3
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 1.4e-96 356.7 253 73.1
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 1.9e-96 356.3 256 72.7
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 4.2e-96 355.1 255 72.5
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 2.7e-95 352.4 246 74.8
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 5.1e-94 348.2 256 71.5
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 8.8e-94 347.4 256 71.9
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 1.3e-92 343.6 250 72.4
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 1.3e-92 343.6 250 72.4
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 8.2e-92 340.9 256 71.1
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 7.7e-90 334.3 249 73.1
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 5.0e-89 331.6 249 72.7
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 1.9e-88 329.7 249 72.3
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 1.9e-88 329.7 249 72.3
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 4.2e-88 328.6 252 72.6
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 1.2e-87 327.0 250 70.8
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 1.7e-84 316.6 257 66.9
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 1.8e-83 313.2 247 65.2
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.9e-80 303.1 249 65.1
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 4.2e-80 302.0 249 64.7
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 2.1e-79 299.7 249 63.9
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 2.7e-79 299.3 250 63.6
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 1.8e-78 296.6 249 63.9
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 5.2e-78 295.0 249 62.7
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 8.8e-78 294.3 247 64.0
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 1.5e-77 293.5 246 61.8
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 2.0e-77 293.1 246 62.2
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 7.5e-77 291.2 250 63.6
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 2.2e-76 289.7 246 61.8
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 5.0e-73 278.5 249 61.4
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 2.5e-72 276.2 247 59.1
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 3.2e-72 275.8 250 60.0
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 2.3e-70 269.6 250 58.0
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 5.2e-70 268.5 246 56.9
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 6.8e-70 268.1 250 61.2
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 1.5e-69 266.9 249 59.4
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 2.0e-69 266.5 250 58.8
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 2.6e-69 266.2 250 58.8
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.7e-68 263.5 246 58.9
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 1.8e-67 260.0 250 56.8
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 3.1e-67 259.2 247 56.7
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 3.1e-67 259.2 235 60.0
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 4.1e-67 258.8 247 56.7
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 4.1e-67 258.8 247 56.3
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 5.4e-67 258.5 242 57.4
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 7.0e-67 258.1 245 55.1
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 9.2e-67 257.7 245 57.1
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 1.2e-66 257.3 253 56.5
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 2.7e-66 256.1 234 60.3
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 7.7e-66 254.6 249 57.8
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 1.3e-65 253.8 238 60.1
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 2.3e-65 253.1 249 58.2
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 2.3e-65 253.1 250 55.6
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 2.3e-65 253.1 236 58.1
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 2.3e-65 253.1 235 57.9
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 8.6e-65 251.1 247 56.7
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 1.1e-64 250.8 252 54.8
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 1.5e-64 250.4 234 57.3
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 3.3e-64 249.2 252 55.2
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 3.3e-64 249.2 251 55.8
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 3.3e-64 249.2 249 56.6
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 5.6e-64 248.4 248 55.2
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 5.6e-64 248.4 235 57.0
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 1.2e-63 247.3 251 56.2
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 3.6e-63 245.7 246 55.3
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 4.7e-63 245.4 251 55.4
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 1.0e-62 244.2 247 55.9
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 1.0e-62 244.2 247 55.9
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 1.0e-62 244.2 235 56.6
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 1.4e-62 243.8 234 58.5
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 1.4e-62 243.8 231 56.3
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 2.3e-62 243.0 238 55.5
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 3.0e-62 242.7 254 54.7
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 4.0e-62 242.3 246 54.9
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 4.0e-62 242.3 251 53.4
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 4.0e-62 242.3 250 55.6
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 2.0e-61 240.0 242 57.0
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 2.6e-61 239.6 238 55.9
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 2.6e-61 239.6 255 53.7
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 4.4e-61 238.8 237 56.1
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 5.7e-61 238.4 222 59.9
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 5.7e-61 238.4 247 55.1
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 2.2e-60 236.5 241 56.4
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 2.9e-60 236.1 235 56.2
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 3.7e-60 235.7 238 56.3
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 4.9e-60 235.3 252 52.8
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 1.1e-59 234.2 236 55.5
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 1.1e-59 234.2 236 56.4
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 3.2e-59 232.6 235 54.9
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 3.2e-59 232.6 235 54.9
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 4.1e-59 232.3 235 54.9
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 5.4e-59 231.9 236 53.8
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 1.6e-58 230.3 241 53.9
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 2.0e-58 229.9 233 54.9
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 2.7e-58 229.6 179 64.8
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 3.9e-57 225.7 231 51.9
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 7.3e-56 221.5 236 56.8
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 1.2e-55 220.7 250 51.2
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 6.2e-55 218.4 245 51.8
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 2.3e-54 216.5 237 53.2
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 5.2e-54 215.3 251 50.6
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 1.5e-53 213.8 228 51.8
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 1.7e-52 210.3 241 52.7
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 2.9e-52 209.5 233 50.2
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 9.5e-48 194.5 125 80.8
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 8.6e-41 171.4 185 52.4
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 1.9e-40 170.2 187 52.4
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 6.8e-38 161.8 165 52.7
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 3.8e-36 156.0 132 62.9
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 1.6e-23 114.0 225 34.7
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 4.8e-23 112.5 235 36.6
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 1.4e-22 110.9 126 51.6
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 4.5e-21 105.9 129 46.5
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 9.9e-21 104.8 124 49.2
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 2.4e-19 100.1 98 53.1
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 3.2e-19 99.8 170 37.1
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 6.7e-17 92.0 76 67.1
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 5.6e-16 89.0 79 62.0
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 2.4e-14 83.6 137 39.4
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 1.3e-12 77.8 82 48.8
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 7.9e-10 68.6 117 38.5
Nn3g18457 Nelumbo nucifera HOM05D005854 ORTHO05D007175 8.7e-09 65.1 73 45.2
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 1.1e-08 64.7 61 52.5
Lsat_1_v5_gn_3_52480 Lactuca sativa HOM05D005854 ORTHO05D007175 5.6e-08 62.4 73 49.3
RcHm_v2.0_Chr3g0451651 Rosa chinensis HOM05D005854 ORTHO05D007175 1.3e-07 61.2 62 54.8


User provided reference genes

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