Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL7G32320 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 1.3e-27 125.6 60 100.0
AL3G35970 Arabidopsis lyrata HOM05D001891 ORTHO05D005832 1.8e-16 88.6 47 91.5
Thhalv10020639m.g Eutrema salsugineum HOM05D001891 ORTHO05D005832 1.8e-16 88.6 47 91.5
Sp3g19820 Schrenkiella parvula HOM05D001891 ORTHO05D005832 1.8e-16 88.6 47 91.5
BcaB06g26287 Brassica carinata HOM05D001891 ORTHO05D005832 4.0e-16 87.4 47 89.4
AT3G21820 Arabidopsis thaliana HOM05D001891 ORTHO05D005832 5.2e-16 87.0 47 89.4
FvH4_6g43540 Fragaria vesca HOM05D001891 ORTHO05D005832 6.8e-16 86.7 47 87.2
FAN02G0497 Fragaria x ananassa HOM05D001891 ORTHO05D005832 6.8e-16 86.7 47 87.2
FAN05G1073 Fragaria x ananassa HOM05D001891 ORTHO05D005832 6.8e-16 86.7 47 87.2
FAN14G5299 Fragaria x ananassa HOM05D001891 ORTHO05D005832 6.8e-16 86.7 47 87.2
BcaC05g28122 Brassica carinata HOM05D001891 ORTHO05D005832 1.2e-15 85.9 47 87.2
A05p26920 Brassica napus HOM05D001891 ORTHO05D005832 1.2e-15 85.9 47 87.2
C05p41560 Brassica napus HOM05D001891 ORTHO05D005832 1.2e-15 85.9 47 87.2
BolC5t32893H Brassica oleracea HOM05D001891 ORTHO05D005832 1.2e-15 85.9 47 87.2
BraA05t21572Z Brassica rapa HOM05D001891 ORTHO05D005832 1.2e-15 85.9 47 87.2
Aa31LG8G8410 Aethionema arabicum HOM05D001891 ORTHO05D005832 3.4e-15 84.3 47 87.2
FAN09G1075 Fragaria x ananassa HOM05D001891 ORTHO05D005832 4.4e-15 84.0 47 83.0
Prupe.3G220400 Prunus persica HOM05D001891 ORTHO05D005832 7.5e-15 83.2 47 85.1
Haze_12897 Corylus avellana HOM05D001891 ORTHO05D005832 1.7e-14 82.0 47 83.0
RcHm_v2.0_Chr2g0160071 Rosa chinensis HOM05D001891 ORTHO05D005832 1.7e-14 82.0 47 83.0
QL08p033823 Quercus lobata HOM05D001891 ORTHO05D005832 2.2e-14 81.6 47 80.9
Nn1g03668 Nelumbo nucifera HOM05D001891 ORTHO05D005832 2.9e-14 81.3 47 83.0
Rhsim06G0158100 Rhododendron simsii HOM05D001891 ORTHO05D005832 2.9e-14 81.3 56 66.1
Cfa014439 Carpinus fangiana HOM05D001891 ORTHO05D005832 3.7e-14 80.9 47 80.9
CiPaw.03G162900 Carya illinoinensis HOM05D001891 ORTHO05D005832 3.7e-14 80.9 47 78.7
MBI18_g19140_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 3.7e-14 80.9 47 78.7
Potri.017G038700 Populus trichocarpa HOM05D001891 ORTHO05D005832 3.7e-14 80.9 47 78.7
MD09G1105100 Malus domestica HOM05D001891 ORTHO05D005832 4.9e-14 80.5 47 80.9
Carub.0003s2190 Capsella rubella HOM05D001891 ORTHO05D005832 6.4e-14 80.1 47 83.0
THA.LOC104821752 Tarenaya hassleriana HOM05D001891 ORTHO05D005832 8.3e-14 79.7 47 80.9
MBI18_g41217_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 1.1e-13 79.3 47 76.6
Sabra17G0025700 Salix brachista HOM05D001891 ORTHO05D005832 1.1e-13 79.3 47 78.7
PSO541G2722 Papaver somniferum HOM05D001891 ORTHO05D005832 1.4e-13 79.0 47 76.6
Aqoxy4G02096 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 1.9e-13 78.6 47 78.7
Aqoxy4G02100 Aquilegia oxysepala HOM05D001891 ORTHO05D005832 1.9e-13 78.6 47 78.7
DCAR_012956 Daucus carota HOM05D001891 ORTHO05D005832 2.4e-13 78.2 47 72.3
ECA238G0562 Erigeron canadensis HOM05D001891 ORTHO05D005832 2.4e-13 78.2 47 72.3
Eucgr.K00821 Eucalyptus grandis HOM05D001891 ORTHO05D005832 2.4e-13 78.2 51 66.7
MBI18_g23508_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 2.4e-13 78.2 47 76.6
Oeu041941.2 Olea europaea HOM05D001891 ORTHO05D005832 2.4e-13 78.2 47 76.6
vmacro12227 Vaccinium macrocarpon HOM05D001891 ORTHO05D005832 2.4e-13 78.2 47 76.6
HPP92_009396 Vanilla planifolia HOM05D001891 ORTHO05D005832 2.4e-13 78.2 47 76.6
Actinidia32078 Actinidia chinensis HOM05D001891 ORTHO05D005832 3.2e-13 77.8 47 78.7
Ah.15g093450 Amaranthus hybridus HOM05D001891 ORTHO05D005832 4.1e-13 77.4 47 68.1
Cc05_g05050 Coffea canephora HOM05D001891 ORTHO05D005832 4.1e-13 77.4 47 74.5
Dinv39687 Davidia involucrata HOM05D001891 ORTHO05D005832 4.1e-13 77.4 47 74.5
CARHR097810 Cardamine hirsuta HOM05D001891 ORTHO05D005832 5.4e-13 77.0 47 80.9
COL.COLO4_12984 Corchorus olitorius HOM05D001891 ORTHO05D005832 7.1e-13 76.6 47 74.5
arahy.Tifrunner.gnm1.ann1.2VZW82 Arachis hypogaea HOM05D001891 ORTHO05D005832 9.2e-13 76.3 47 74.5
Ciclev10015025m.g Citrus clementina HOM05D001891 ORTHO05D005832 9.2e-13 76.3 47 76.6
Eucgr.K00822 Eucalyptus grandis HOM05D001891 ORTHO05D005832 9.2e-13 76.3 47 72.3
GSVIVG01030624001 Vitis vinifera HOM05D001891 ORTHO05D005832 9.2e-13 76.3 47 78.7
Cpa.g.sc8.235 Carica papaya HOM05D001891 ORTHO05D005832 1.2e-12 75.9 47 76.6
Migut.M00395 Erythranthe guttata HOM05D001891 ORTHO05D005832 1.2e-12 75.9 47 72.3
Eucgr.K00860 Eucalyptus grandis HOM05D001891 ORTHO05D005832 1.2e-12 75.9 47 70.2
TAR624G1196 Trochodendron aralioides HOM05D001891 ORTHO05D005832 1.6e-12 75.5 47 78.7
Atru.chr6.3148 Acer truncatum HOM05D001891 ORTHO05D005832 2.1e-12 75.1 47 74.5
arahy.Tifrunner.gnm1.ann1.IG5XIH Arachis hypogaea HOM05D001891 ORTHO05D005832 2.1e-12 75.1 47 74.5
arahy.Tifrunner.gnm1.ann1.XAPR04 Arachis hypogaea HOM05D001891 ORTHO05D005832 2.1e-12 75.1 47 74.5
ClCG02G008450 Citrullus lanatus HOM05D001891 ORTHO05D005832 2.1e-12 75.1 51 72.5
Duzib052G0092 Durio zibethinus HOM05D001891 ORTHO05D005832 2.1e-12 75.1 47 72.3
Gohir.A01G013300 Gossypium hirsutum HOM05D001891 ORTHO05D005832 2.7e-12 74.7 47 74.5
Gorai.002G016300 Gossypium raimondii HOM05D001891 ORTHO05D005832 2.7e-12 74.7 47 74.5
HanXRQChr10g0297501 Helianthus annuus HOM05D001891 ORTHO05D005832 2.7e-12 74.7 47 74.5
CAN.G921.8 Capsicum annuum HOM05D001891 ORTHO05D005832 3.5e-12 74.3 47 72.3
Eucgr.K00839 Eucalyptus grandis HOM05D001891 ORTHO05D005832 3.5e-12 74.3 47 68.1
Sed0014701 Sechium edule HOM05D001891 ORTHO05D005832 3.5e-12 74.3 47 74.5
arahy.Tifrunner.gnm1.ann1.R1IBZY Arachis hypogaea HOM05D001891 ORTHO05D005832 4.6e-12 73.9 47 74.5
MELO3C019236.2 Cucumis melo HOM05D001891 ORTHO05D005832 4.6e-12 73.9 47 74.5
SalBow7G4184 Salvia bowleyana HOM05D001891 ORTHO05D005832 4.6e-12 73.9 47 72.3
TWI18G0733 Tripterygium wilfordii HOM05D001891 ORTHO05D005832 4.6e-12 73.9 47 76.6
Gohir.D01G014600 Gossypium hirsutum HOM05D001891 ORTHO05D005832 6.0e-12 73.6 47 74.5
Medtr2g088820 Medicago truncatula HOM05D001891 ORTHO05D005832 6.0e-12 73.6 47 70.2
Thecc.02G162300 Theobroma cacao HOM05D001891 ORTHO05D005832 6.0e-12 73.6 47 74.5
CANSAT64G2761 Cannabis sativa HOM05D001891 ORTHO05D005832 7.8e-12 73.2 47 70.2
CsaV3_2G035180 Cucumis sativus L. HOM05D001891 ORTHO05D005832 7.8e-12 73.2 47 74.5
Eucgr.K00818 Eucalyptus grandis HOM05D001891 ORTHO05D005832 7.8e-12 73.2 47 66.0
Lalb_Chr24g0393071 Lupinus albus HOM05D001891 ORTHO05D005832 7.8e-12 73.2 47 72.3
Manes.13G073100 Manihot esculenta HOM05D001891 ORTHO05D005832 7.8e-12 73.2 47 76.6
CSS0020073 Camellia sinensis var. sinensis HOM05D001891 ORTHO05D005832 1.0e-11 72.8 47 72.3
MBI02_g41952_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.0e-11 72.8 46 71.7
Nitab4.5_0001176g0150 Nicotiana tabacum HOM05D001891 ORTHO05D005832 1.0e-11 72.8 47 72.3
Hund01107 Selenicereus undatus HOM05D001891 ORTHO05D005832 1.0e-11 72.8 47 68.1
Lj8A122T61 Lonicera japonica HOM05D001891 ORTHO05D005832 1.3e-11 72.4 47 72.3
Peaxi162Scf00007g01229 Petunia axillaris HOM05D001891 ORTHO05D005832 1.3e-11 72.4 47 70.2
Phvul.005G113700 Phaseolus vulgaris HOM05D001891 ORTHO05D005832 1.7e-11 72.0 47 70.2
PGR142G2396 Punica granatum HOM05D001891 ORTHO05D005832 1.7e-11 72.0 47 72.3
Solyc07g052570.4 Solanum lycopersicum HOM05D001891 ORTHO05D005832 1.7e-11 72.0 47 70.2
Sopen07g026180 Solanum pennellii HOM05D001891 ORTHO05D005832 1.7e-11 72.0 47 70.2
PGSC0003DMG400026174 Solanum tuberosum HOM05D001891 ORTHO05D005832 1.7e-11 72.0 47 70.2
VMungo1080G1248 Vigna mungo HOM05D001891 ORTHO05D005832 1.7e-11 72.0 47 70.2
Lj3g0012140 Lotus japonicus HOM05D001891 ORTHO05D005832 2.3e-11 71.6 47 68.1
Psat6g077080 Pisum sativum HOM05D001891 ORTHO05D005832 2.3e-11 71.6 47 68.1
Psat6g077120 Pisum sativum HOM05D001891 ORTHO05D005832 2.3e-11 71.6 47 68.1
MBI01_g06556_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 3.9e-11 70.9 46 69.6
Psat5g265280 Pisum sativum HOM05D001891 ORTHO05D005832 6.6e-11 70.1 47 66.0
Os04g0629100 Oryza sativa ssp. japonica HOM05D001891 ORTHO05D005832 1.5e-10 68.9 46 67.4
Zm00001eb069580 Zea mays HOM05D001891 ORTHO05D005832 1.9e-10 68.6 47 66.0
Glyma.12G195700 Glycine max HOM05D001891 ORTHO05D005832 3.3e-10 67.8 47 70.2
Pp3c13_21910 Physcomitrium patens HOM05D001891 ORTHO05D005832 3.3e-10 67.8 47 68.1
Psat0s4720g0040 Pisum sativum HOM05D001891 ORTHO05D005832 3.3e-10 67.8 47 63.8
ATR0804G013 Amborella trichopoda HOM05D001891 ORTHO05D005832 4.3e-10 67.4 47 66.0
arahy.Tifrunner.gnm1.ann1.62D34N Arachis hypogaea HOM05D001891 ORTHO05D005832 4.3e-10 67.4 46 69.6
AUR62040523 Chenopodium quinoa HOM05D001891 ORTHO05D005832 4.3e-10 67.4 46 63.0
SGA_v2.0_scaffold70G23419 Striga asiatica HOM05D001891 ORTHO05D005832 4.3e-10 67.4 53 56.6
TPR.G4158 Trifolium pratense HOM05D001891 ORTHO05D005832 4.3e-10 67.4 47 66.0
unitig_26.g9659 Utricularia gibba HOM05D001891 ORTHO05D005832 9.5e-10 66.2 48 70.8
SEGI_20287 Sequoiadendron giganteum HOM05D001891 ORTHO05D005832 3.6e-09 64.3 47 63.8
EL10Ac7g17313 Beta vulgaris HOM05D001891 ORTHO05D005832 4.7e-09 63.9 47 59.6
arahy.Tifrunner.gnm1.ann1.I3MG1X Arachis hypogaea HOM05D001891 ORTHO05D005832 8.1e-09 63.2 42 71.4
Eucgr.K00819 Eucalyptus grandis HOM05D001891 ORTHO05D005832 6.8e-08 60.1 61 49.2
SMO347G0022 Selaginella moellendorffii HOM05D001891 ORTHO05D005832 1.2e-07 59.3 47 59.6
MBI01_g08957_MAGBIO Magnolia biondii HOM05D001891 ORTHO05D005832 3.4e-07 57.8 56 53.6
arahy.Tifrunner.gnm1.ann1.FTMH30 Arachis hypogaea HOM05D001891 ORTHO05D005832 4.4e-07 57.4 44 63.6
Actinidia12502 Actinidia chinensis HOM05D001891 ORTHO05D005832 1.7e-06 55.5 44 68.2
Mapoly0057s0093 Marchantia polymorpha HOM05D001891 ORTHO05D005832 2.2e-06 55.1 48 56.2


User provided reference genes

Program Settings